scholarly journals Whole-Genome Sequence of a Plant Growth-Promoting Strain, Serratia marcescens BTL07, Isolated from the Rhizoplane of Capsicum annuum L.

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Sudipta Dutta ◽  
Amena Khatun ◽  
Dipali Rani Gupta ◽  
Musrat Zahan Surovy ◽  
M. Mahbubur Rahman ◽  
...  
Keyword(s):  
Plant Growth ◽  
Serratia Marcescens ◽  
Genome Sequence ◽  
Molecular Mechanisms ◽  
Sequence Data ◽  
Growth Promotion ◽  
Draft Genome ◽  
Plant Diseases ◽  
Whole Genome Sequence ◽  
Content Type

Serratia marcescens strain BTL07, which has the ability to promote growth and suppress plant diseases, was isolated from the rhizoplane of a chili plant. The draft genome sequence data of the strain will contribute to advancing our understanding of the molecular mechanisms underlying plant growth promotion and tolerance to different stresses.

scholarly journals Whole-Genome Sequence of Bacillus cereus AR156, a Potential Biocontrol Agent with High Soilborne Disease Biocontrol Efficacy and Plant Growth Promotion

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Chun-Hao Jiang ◽  
Yun Chen ◽  
Fang Yan ◽  
Zhi-Hang Fan ◽  
Jian-Hua Guo
Keyword(s):  
Bacillus Cereus ◽  
Genome Sequence ◽  
Molecular Mechanisms ◽  
Growth Promotion ◽  
Draft Genome ◽  
Gc Content ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Soilborne Disease

ABSTRACT Bacillus cereus AR156 was originally isolated from the forest soil of Zhenjiang, a city in China. To shed new light on the molecular mechanisms underlying the biological control of soilborne pathogens, the whole genome of this strain was sequenced. Here, we report the draft genome sequence of this strain, consisting of a single circularized contig measuring 5.66 Mb, with an average GC content of 35.5% and 5,367 open reading frames.

scholarly journals Draft Genome Sequence of the Antifungal-Producing Plant-Benefiting Bacterium Burkholderia pyrrocinia CH-67

2012 ◽  
Vol 194 (23) ◽  
pp. 6649-6650 ◽  
Author(s):  
Ju Yeon Song ◽  
Min-Jung Kwak ◽  
Kwang Youll Lee ◽  
Hyun Gi Kong ◽  
Byung Kwon Kim ◽  
...  
Keyword(s):  
Secondary Metabolites ◽  
Plant Growth ◽  
Forest Soil ◽  
Genome Sequence ◽  
Plant Growth Promotion ◽  
Biocontrol Agent ◽  
Growth Promotion ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACTBurkholderia pyrrociniaCH-67 was isolated from forest soil as a biocontrol agent to be utilized in agriculture. Here, we report the 8.05-Mb draft genome sequence of this bacterium. Its genome contains genes involved in biosynthesis of secondary metabolites and plant growth promotion, which may contribute to probiotic effects on plants.

scholarly journals The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus

2019 ◽  
Vol 11 (7) ◽  
pp. 1965-1970 ◽  
Author(s):  
Nikola Palevich ◽  
Paul H Maclean ◽  
Abdul Baten ◽  
Richard W Scott ◽  
David M Leathwick
Keyword(s):  
Genome Sequence ◽  
Molecular Mechanisms ◽  
De Novo ◽  
Sequence Data ◽  
Animal Health ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Parasitic Nematodes ◽  
Hybrid Assembly ◽  
Genetic Structures

Abstract Internal parasitic nematodes are a global animal health issue causing drastic losses in livestock. Here, we report a H. contortus representative draft genome to serve as a genetic resource to the scientific community and support future experimental research of molecular mechanisms in related parasites. A de novo hybrid assembly was generated from PCR-free whole genome sequence data, resulting in a chromosome-level assembly that is 465 Mb in size encoding 22,341 genes. The genome sequence presented here is consistent with the genome architecture of the existing Haemonchus species and is a valuable resource for future studies regarding population genetic structures of parasitic nematodes. Additionally, comparative pan-genomics with other species of economically important parasitic nematodes have revealed highly open genomes and strong collinearities within the phylum Nematoda.

scholarly journals Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Ye Xia ◽  
Seth DeBolt ◽  
Qin Ma ◽  
Adam McDermaid ◽  
Cankun Wang ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Growth Promotion ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Plant Growth Promoting Activity ◽  
Growth Promoting

We report here the improved draft genome sequence of Pseudomonas poae strain A2-S9, a bacterium that was originally isolated from switchgrass plants and exhibited the capacity for plant growth promotion. Its genome has a size of 6.68 Mbp and a GC content of 61.3%.

scholarly journals Genome Sequence of the Diazotrophic Gram-Positive Rhizobacterium Paenibacillus riograndensis SBR5T

2011 ◽  
Vol 193 (22) ◽  
pp. 6391-6392 ◽  
Author(s):  
Anelise Beneduzi ◽  
Samanta Campos ◽  
Adriana Ambrosini ◽  
Rocheli de Souza ◽  
Camille Granada ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Draft Genome ◽  
Gram Positive ◽  
Content Type ◽  
Wheat Field ◽  
Agricultural Applications ◽  
South Of Brazil

Paenibacillus riograndensisSBR5T, a nitrogen-fixing Gram-positive rhizobacterium isolated from a wheat field in the south of Brazil, has a great potential for agricultural applications due to its plant growth promotion effects. Here we present the draft genome sequence ofP. riograndensisSBR5T. Its 7.37-Mb genome encodes determinants of the diazotrophic lifestyle and plant growth promotion, such as nitrogen fixation, antibiotic resistance, nitrate utilization, and iron uptake.

scholarly journals Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium

2017 ◽  
Vol 5 (9) ◽  
Author(s):  
Feras F. Lafi ◽  
Intikhab Alam ◽  
Rene Geurts ◽  
Ton Bisseling ◽  
Vladimir B. Bajic ◽  
...  
Keyword(s):  
Saudi Arabia ◽  
Plant Growth ◽  
Genome Sequence ◽  
Growth Promotion ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Ochrobactrum Intermedium ◽  
Growth Promoting

ABSTRACT Ochrobactrum intermedium strain SA148 is a plant growth-promoting bacterium isolated from sandy soil in the Jizan area of Saudi Arabia. Here, we report the 4.9-Mb draft genome sequence of this strain, highlighting different pathways characteristic of plant growth promotion activity and environmental adaptation of SA148.

scholarly journals Genomewide Association Analyses of Lactation Persistency and Milk Production Traits in Holstein Cattle Based on Imputed Whole-Genome Sequence Data

Genes ◽  
2021 ◽  
Vol 12 (11) ◽  
pp. 1830
Author(s):  
Victor B. Pedrosa ◽  
Flavio S. Schenkel ◽  
Shi-Yi Chen ◽  
Hinayah R. Oliveira ◽  
Theresa M. Casey ◽  
...  
Keyword(s):  
Milk Production ◽  
Genome Sequence ◽  
North American ◽  
Milk Fat ◽  
Molecular Mechanisms ◽  
Sequence Data ◽  
Whole Genome Sequence ◽  
Holstein Cattle ◽  
Whole Genome ◽  
Production Traits

Lactation persistency and milk production are among the most economically important traits in the dairy industry. In this study, we explored the association of over 6.1 million imputed whole-genome sequence variants with lactation persistency (LP), milk yield (MILK), fat yield (FAT), fat percentage (FAT%), protein yield (PROT), and protein percentage (PROT%) in North American Holstein cattle. We identified 49, 3991, 2607, 4459, 805, and 5519 SNPs significantly associated with LP, MILK, FAT, FAT%, PROT, and PROT%, respectively. Various known associations were confirmed while several novel candidate genes were also revealed, including ARHGAP35, NPAS1, TMEM160, ZC3H4, SAE1, ZMIZ1, PPIF, LDB2, ABI3, SERPINB6, and SERPINB9 for LP; NIM1K, ZNF131, GABRG1, GABRA2, DCHS1, and SPIDR for MILK; NR6A1, OLFML2A, EXT2, POLD1, GOT1, and ETV6 for FAT; DPP6, LRRC26, and the KCN gene family for FAT%; CDC14A, RTCA, HSTN, and ODAM for PROT; and HERC3, HERC5, LALBA, CCL28, and NEURL1 for PROT%. Most of these genes are involved in relevant gene ontology (GO) terms such as fatty acid homeostasis, transporter regulator activity, response to progesterone and estradiol, response to steroid hormones, and lactation. The significant genomic regions found contribute to a better understanding of the molecular mechanisms related to LP and milk production in North American Holstein cattle.

scholarly journals Draft Genome Sequence of Acholeplasma laidlawii Isolated from the Conjunctiva of a Heifer with Infectious Bovine Keratoconjunctivitis

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Gloria Gioia ◽  
Maria F. Addis ◽  
Laura B. Goodman ◽  
Patrick K. Mitchell ◽  
Belinda Thompson ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Infectious Bovine Keratoconjunctivitis ◽  
Acholeplasma Laidlawii

ABSTRACT Acholeplasma laidlawii can be isolated from cattle environments and different body sites of bovines. It is still under evaluation if A. laidlawii acts as a primary pathogen. Here, we present the whole-genome sequence of A. laidlawii isolated from the conjunctiva of a heifer with infectious bovine keratoconjunctivitis.

scholarly journals Draft Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas pseudoalcaligenes KB-10

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
M. M. A. Khan ◽  
Jin Duan ◽  
Bernard R. Glick ◽  
Patrick M. Finnegan ◽  
Saleh A. Kabli ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Circular Chromosome ◽  
Pseudomonas Pseudoalcaligenes ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

ABSTRACT Pseudomonas pseudoalcaligenes KB-10 can enhance salinity tolerance in coriander plants. We report a draft genome sequence of P. pseudoalcaligenes KB-10, comprising a 5,241,174-bp circular chromosome containing 4,921 genes, with a GC content of 62.97%.

scholarly journals Genome Sequence of Pseudomonas sp. Strain AN3A02, Isolated from Rhizosphere of Deschampsia antarctica Desv., with Antagonism against Botrytis cinerea

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Matías Poblete-Morales ◽  
Claudia Rabert ◽  
Andrés F. Olea ◽  
Héctor Carrasco ◽  
Raúl Calderón ◽  
...  
Keyword(s):  
Botrytis Cinerea ◽  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deschampsia Antarctica ◽  
Dual Culture ◽  
Content Type ◽  
A Genome ◽  
Antarctic Continent

ABSTRACT Here, we announce the draft genome sequence of Pseudomonas sp. strain AN3A02, isolated from the rhizosphere of one of the only two species of vascular plants existing in the Antarctic continent, Deschampsia antarctica Desv. This isolate, which inhibited the mycelial growth of Botrytis cinerea in dual culture, has a genome sequence of 6,778,644 bp, with a G+C content of 60.4%. These draft genome sequence data provide insight into the genetics underpinning the antifungal activity of this strain.

Sign in / Sign up

Export Citation Format

Share Document