Comparative analysis of mitochondrial DNA of Yakuts and other Asian populations

2006 ◽  
Vol 42 (12) ◽  
pp. 1439-1446 ◽  
Author(s):  
L. A. Tarskaia ◽  
P. Melton
2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Yuan-Chun Jin ◽  
Xiang-Yong Li ◽  
Jin-Hui Liu ◽  
Xing-Quan Zhu ◽  
Guo-Hua Liu

1999 ◽  
Vol 89 (3) ◽  
pp. 245-253 ◽  
Author(s):  
J.H. Mun ◽  
Y.H. Song ◽  
K.L. Heong ◽  
G.K. Roderick

AbstractMany species of insects associated with cultivated rice do not over-winter in Korea and Japan, but migrate into these areas each year. To understand better the origins of these immigrations as well as the geographic structure of rice pests in Asian rice growing regions, intraspecific variation in two species of delphacid planthoppers, Nilaparvata lugens (Stål) and Sogatella furcifera Horvath, was examined. An 850 base pair region of mitochondrial DNA cytochrome oxidase-I (CO-I) was sequenced from a total of 71 individuals collected from 11 localities in seven countries: Korea, Philippines, China, Bangladesh, Malaysia, Vietnam and Thailand. In N. lugens, three haplotypes were found and all populations sampled shared a dominant haplotype. Localities in Korea contained two haplotypes and localities in China and the Philippines contained three. However, in samples from the Indochina peninsula no variation was detected either within or between populations, consistent with a hypothesis of regular migration and gene flow. These populations did not contain some haplotypes found in Korea, suggesting they were not the source of yearly immigration into Korea and, by extension, Japan. Populations from China did share haplotypes with Korea, which was consistent with the hypothesis that China was the source for yearly immigration into Korea. There was insufficient resolution to distinguish among populations in China. For N. lugens, the data suggested that populations south of the Red River Valley in Vietnam experienced regular mixing and were distinct from populations to the north which contributed to yearly immigrations. In S. furcifera, there was less differentiation among populations. Two haplotypes were found in all populations except Malaysia. The results for both species were consistent with seasonal weather data and indicated that more detailed analysis of DNA sequence data will be fruitful.


2015 ◽  
Vol 44 (D1) ◽  
pp. D1262-D1265 ◽  
Author(s):  
Dmitri Toren ◽  
Thomer Barzilay ◽  
Robi Tacutu ◽  
Gilad Lehmann ◽  
Khachik K. Muradian ◽  
...  

1996 ◽  
Vol 41 (4) ◽  
pp. 13960J ◽  
Author(s):  
Terry Melton ◽  
Mark Stoneking

2010 ◽  
Vol 670 ◽  
pp. 507-516 ◽  
Author(s):  
Paul Dan Cristea ◽  
Rodica Tuduce

The nucleotide imbalance, the nucleotide pair imbalance and the nucleotide path of mitochondrial Nucleotide Genomic Signals (mtNuGSs) for several taxa have been analyzed comparatively. Evolutionary changes of conservative segments, as well as individual mutations of hyper-variable segments have been identified. An innovative technique, based on reference-offset representation of sets of related signals has been used throughout the study.


2021 ◽  
Author(s):  
Hiroshi Sugiyama ◽  
Vinodh Sahayasheela ◽  
Zutao Yu ◽  
Ganesh Pandian

Abstract G-quadruplexes (G4s) are noncanonical structures that can form in the genomes of a range of organisms and are known to play various roles in cellular function. G4s can also form in mitochondrial DNA (mtDNA) because of their high guanine content, and these G4s may play roles in regulating gene expression, DNA replication, and genome stability. However, little is known regarding the evolution and dissemination of G4s in mitochondria. Here we analyzed the potential G4-forming sequences in mtDNA of 16 species from various families and demonstrated that the heavy strand of mtDNA of higher-order organisms contained higher levels of G4 regions than that of lower-order organisms. Analysis of the codons in the light strand revealed enrichment of guanine/cytosine-rich regions in higher eukaryotes and of adenine/thymidine-rich regions in lower-order organisms. Our study showed the diversity of G4s in species ranging from lower to higher orders. In particular, mammals such as humans, chimpanzees, and monkeys display a greater number of G4s than lower-order organisms. These potentially play a role in a range of cellular functions and assist in the evolution of higher organisms.


2022 ◽  
Vol 12 ◽  
Author(s):  
Irene Cardinali ◽  
Martin Bodner ◽  
Marco Rosario Capodiferro ◽  
Christina Amory ◽  
Nicola Rambaldi Migliore ◽  
...  

Mongolia is located in a strategic position at the eastern edge of the Eurasian Steppe. Nomadic populations moved across this wide area for millennia before developing more sedentary communities, extended empires, and complex trading networks, which connected western Eurasia and eastern Asia until the late Medieval period. We provided a fine-grained portrait of the mitochondrial DNA (mtDNA) variation observed in present-day Mongolians and capable of revealing gene flows and other demographic processes that took place in Inner Asia, as well as in western Eurasia. The analyses of a novel dataset (N = 2,420) of mtDNAs highlighted a clear matrilineal differentiation within the country due to a mixture of haplotypes with eastern Asian (EAs) and western Eurasian (WEu) origins, which were differentially lost and preserved. In a wider genetic context, the prevalent EAs contribution, larger in eastern and central Mongolian regions, revealed continuous connections with neighboring Asian populations until recent times, as attested by the geographically restricted haplotype-sharing likely facilitated by the Genghis Khan’s so-called Pax Mongolica. The genetic history beyond the WEu haplogroups, notably detectable on both sides of Mongolia, was more difficult to explain. For this reason, we moved to the analysis of entire mitogenomes (N = 147). Although it was not completely possible to identify specific lineages that evolved in situ, two major changes in the effective (female) population size were reconstructed. The more recent one, which began during the late Pleistocene glacial period and became steeper in the early Holocene, was probably the outcome of demographic events connected to western Eurasia. The Neolithic growth could be easily explained by the diffusion of dairy pastoralism, as already proposed, while the late glacial increase indicates, for the first time, a genetic connection with western Eurasian refuges, as supported by the unusual high frequency and internal sub-structure in Mongolia of haplogroup H1, a well-known post-glacial marker in Europe. Bronze Age events, without a significant demographic impact, might explain the age of some mtDNA haplogroups. Finally, a diachronic comparison with available ancient mtDNAs made it possible to link six mitochondrial lineages of present-day Mongolians to the timeframe and geographic path of the Silk Route.


2020 ◽  
pp. 73-83
Author(s):  
Aleksandra Nikezić ◽  
Stefan Blagojević ◽  
Maja Ćupurdija ◽  
Nevena Planojević ◽  
Jovana Jovankić ◽  
...  

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