How wood evolves: a new synthesis

Botany ◽  
2012 ◽  
Vol 90 (10) ◽  
pp. 901-940 ◽  
Author(s):  
Sherwin Carlquist

Recent advances in wood physiology, molecular phylogeny, and ultrastructure (chiefly scanning electron microscopy, SEM), as well as important new knowledge in traditional fields, provide the basis for a new vision of how wood evolves. Woody angiosperms have, in the main, shifted from conductive safety to conductive efficiency (with many variations and modifications) and from ability to resist cavitation (low vulnerability) to ability to refill vessels. The invention of the vessel was a kind of dimorphism (vessel elements plus tracheids) that permitted division of labor and many kinds of wood repatterning that suit conductive safety–efficiency trade-offs. Angiosperms were primarily adapted to mesic habitats but were not failures or “unstable.” They have survived to the present in such habitats well, along with older structural adaptations (e.g., the scalariform perforation plate) that are still suited to such habitats. These “primitive” features are evident in earlier branchings of phylogenetic trees based on multiple genes. Older features may still be functional and thus persist, although newer formulations are overriding in effect. There are, however, numerous instances of “breakouts” in a number of clades (ecological iterations and bursts of speciation and diversification related to new ways of dealing with water economy), whereas in other branchings, other clades show ecological stasis over long periods of time. Newer physiological and anatomical mechanisms have permitted entry into habitats with marked fluctuation in moisture availability. Wood evolves progressively, and literal character state reversal may be unusual: genomic and developmental information holds answers to these changes. Wood is a complex tissue, and each of the histological components shows polymorphism as an evolutionary mechanism. Cell types within wood evolve collaboratively. Shifts in wood features (e.g., simplification of the scalariform perforation plate) are commonly homoplastic. Manifold changes in habit and in leaf physiology, morphology, and anatomy accompany wood evolution, and wood should be studied with relationship to real-world ecology, information that cannot be gleaned from literature or other secondary sources. Heterochrony (protracted juvenilism, accelerated adulthood) characterizes angiosperm xylem extensively, far more so than in other vascular plants, and these mechanisms have resulted in many remarkable changes (e.g., monocots have permanently juvenile xylem, woody trees represent accelerated adulthood). Understanding the many successful features of angiosperm wood evolution must ultimately rest on syntheses.

Author(s):  
Sergei Tarasov ◽  
Istvan Miko ◽  
Matthew Yoder ◽  
Josef Uyeda

Ancestral character state reconstruction has been long used to gain insight into the evolution of individual traits in organisms. However, organismal anatomies (= entire phenotypes) are not merely ensembles of individual traits, rather they are complex systems where traits interact with each other due to anatomical dependencies (when one trait depends on the presence of another trait) and developmental constraints. Comparative phylogenetics has been largely lacking a method for reconstructing the evolution of entire organismal anatomies or organismal body regions. Herein, we present a new approach named PARAMO (Phylogenetic Ancestral Reconstruction of Anatomy by Mapping Ontologies, Tarasov and Uyeda 2019) that takes into account anatomical dependencies and uses stochastic maps (i.e., phylogenetic trees with an instance of mapped evolutionary history of characters, Huelsenbeck et al. 2003) along with anatomy ontologies to reconstruct organismal anatomies. Our approach treats the entire phenotype or its component body regions as single complex characters and allows exploring and comparing phenotypic evolution at different levels of anatomical hierarchy. These complex characters are constructed by ontology-informed amalgamation of elementary characters (i.e., those coded in character matrix) using stochastic maps. In our approach, characters are linked with the terms from an anatomy ontology, which allows viewing them not just as an ensemble of character state tokens but as entities that have their own biological meaning provided by the ontology. This ontology-informed framework provides new opportunities for tracking phenotypic radiations and anatomical evolution of organisms, which we explore using a large dataset for the insect order Hymenoptera (sawflies, wasps, ants and bees).


Author(s):  
Randolph M. Nesse ◽  
Richard Dawkins

The role of evolutionary biology as a basic science for medicine is expanding rapidly. Some evolutionary methods are already widely applied in medicine, such as population genetics and methods for analysing phylogenetic trees. Newer applications come from seeking evolutionary as well as proximate explanations for disease. Traditional medical research is restricted to proximate studies of the body’s mechanism, but separate evolutionary explanations are needed for why natural selection has left many aspects of the body vulnerable to disease. There are six main possibilities: mismatch, infection, constraints, trade-offs, reproduction at the cost of health, and adaptive defences. Like other basic sciences, evolutionary biology has limited direct clinical implications, but it provides essential research methods, encourages asking new questions that foster a deeper understanding of disease, and provides a framework that organizes the facts of medicine.


BMC Biology ◽  
2020 ◽  
Vol 18 (1) ◽  
Author(s):  
Nathaniel S. Woodling ◽  
Arjunan Rajasingam ◽  
Lucy J. Minkley ◽  
Alberto Rizzo ◽  
Linda Partridge

Abstract Background The increasing age of global populations highlights the urgent need to understand the biological underpinnings of ageing. To this end, inhibition of the insulin/insulin-like signalling (IIS) pathway can extend healthy lifespan in diverse animal species, but with trade-offs including delayed development. It is possible that distinct cell types underlie effects on development and ageing; cell-type-specific strategies could therefore potentially avoid negative trade-offs when targeting diseases of ageing, including prevalent neurodegenerative diseases. The highly conserved diversity of neuronal and non-neuronal (glial) cell types in the Drosophila nervous system makes it an attractive system to address this possibility. We have thus investigated whether IIS in distinct glial cell populations differentially modulates development and lifespan in Drosophila. Results We report here that glia-specific IIS inhibition, using several genetic means, delays development while extending healthy lifespan. The effects on lifespan can be recapitulated by adult-onset IIS inhibition, whereas developmental IIS inhibition is dispensable for modulation of lifespan. Notably, the effects we observe on both lifespan and development act through the PI3K branch of the IIS pathway and are dependent on the transcription factor FOXO. Finally, IIS inhibition in several glial subtypes can delay development without extending lifespan, whereas the same manipulations in astrocyte-like glia alone are sufficient to extend lifespan without altering developmental timing. Conclusions These findings reveal a role for distinct glial subpopulations in the organism-wide modulation of development and lifespan, with IIS in astrocyte-like glia contributing to lifespan modulation but not to developmental timing. Our results enable a more complete picture of the cell-type-specific effects of the IIS network, a pathway whose evolutionary conservation in humans make it tractable for therapeutic interventions. Our findings therefore underscore the necessity for cell-type-specific strategies to optimise interventions for the diseases of ageing.


IAWA Journal ◽  
2018 ◽  
Vol 39 (2) ◽  
pp. 191-208 ◽  
Author(s):  
Anna B. Wilczek ◽  
Muhammad Iqbal ◽  
Wieslaw Wloch ◽  
Marcin Klisz

ABSTRACTAll cell types of the secondary xylem arise from the meristematic cells (initials) of the vascular cambium and grow under mechanical constraints emerging from the circular-symmetrical geometry that characterises many tree trunks. The course of intrusive growth of cambial initials has been elucidated, but is yet to be described in the case of xylem fibres. This study explains the geometry of intrusive growth of the secondary xylem fibres in the trunk ofRobinia pseudoacacia.Long series of serial semi-thin sections of the vascular cambium and the differentiating secondary xylem were analysed. Since fibres grow in close vicinity to expanding cells of the derivatives of the vascular cambium, we assumed that they have similar growth conditions. Dealing with the cylindrical tissue of the vascular cambium in a previous study, we used a circularly symmetrical equation for describing the growth mechanism of cambial initials. Like the cambial initials, some of the cambial derivatives differentiating into the various cell types composing the secondary xylem also exhibit intrusive growth between the tangential walls of adjacent cells. As seen in cross sections of the cambium, intrusively growing initials form slanted walls by a gradual transformation of tangential (periclinal) walls into radial (anticlinal) walls. Similarly, the intrusive growth of xylem fibres manifests initially as slants, which are formed due to axial growth of the growing cell tips along the tangential walls of adjacent cells. During this process, the tangential walls of adjacent cells are partly separated and dislocated from the tangential plane. The final shape of xylem fibres, or that of vessel elements and axial parenchyma cells, depends upon the ratio of their intrusiveversussymplastic growths in the axial, circumferential and radial directions.


2016 ◽  
Author(s):  
Valentine Svensson ◽  
Kedar Nath Natarajan ◽  
Lam-Ha Ly ◽  
Ricardo J Miragaia ◽  
Charlotte Labalette ◽  
...  

AbstractHigh-throughput single cell RNA sequencing (scRNA-seq) has become an established and powerful method to investigate transcriptomic cell-to-cell variation, and has revealed new cell types, and new insights into developmental process and stochasticity in gene expression. There are now several published scRNA-seq protocols, which all sequence transcriptomes from a minute amount of starting material. Therefore, a key question is how these methods compare in terms of sensitivity of detection of mRNA molecules, and accuracy of quantification of gene expression. Here, we assessed the sensitivity and accuracy of many published data sets based on standardized spike-ins with a uniform raw data processing pipeline. We developed a flexible and fast UMI counting tool (https://github.com/vals/umis) which is compatible with all UMI based protocols. This allowed us to relate these parameters to sequencing depth, and discuss the trade offs between the different methods. To confirm our results, we performed experiments on cells from the same population using three different protocols. We also investigated the effect of RNA degradation on spike-in molecules, and the average efficiency of scRNA-seq on spike-in molecules versus endogenous RNAs.


2020 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Joakim Hans Kembro ◽  
Andreas Norrman

PurposeRecent studies have highlighted the importance of adopting a contingency approach to configuring omnichannel warehouses. Nonetheless, research on how various contextual factors influence the selection of warehouse configuration is scarce. This study fills this knowledge gap by exploring how and why certain configurations fit in different omnichannel contexts.Design/methodology/approachA case study is conducted with six leading Swedish omnichannel retailers. Focusing on outbound warehouse configurations, data are collected through interviews, on-site observations, and secondary sources. A multistep analysis is made, including both pattern matching and explanation building.FindingsThe qualitative analysis reveals 16 contextual factors, of which assortment range, requested online order fulfillment times, goods size and total transactions are the most influential. The study shows how contextual factors create different challenges, thereby influencing the choice of the configurations. In addition to market dynamics and task complexity, the study describes four categories of the factors and related challenges that are particularly important in omnichannels: speed, space, economies of scale and tied-up capital.Research limitations/implicationsThe findings highlight the importance of understanding context and imply that multiple challenges may require trade-offs when selecting configurations, for example, regarding what storage, processes and resources to integrate or separate. To confirm, extend, challenge and further operationalize the ideas and observations put forward in this paper, an agenda with future research issues is given for this accelerating, contemporary phenomenon.Practical implicationsManagers could leverage the frameworks proposed for the contextual profiling of their current and future positions. The frameworks provide support for understanding the important challenges and potential trade-offs and developing aligned configurations.Originality/valueThis study is original in the way it provides in-depth, case study findings about contextual factors and their influence on omnichannel warehouse configuration.


2015 ◽  
Vol 11 (3) ◽  
pp. 369-371 ◽  
Author(s):  
Rebecca J. Morris

Synopsis In January, 2015, Chipotle stopped serving pork at a third of its 1,800 restaurants due to its discovery that a pork supplier was not meeting Chipotle's “Food with Integrity” standards. This case examines the trade-offs Chipotle faced in maintaining its focus on sustainable ingredients as the chain grew rapidly. Demand for healthier ingredients by others in the industry and scalability problems in sustainable agricultural production suggested that supply shortages and higher prices were likely threats to Chipotle's continued rapid growth. Could Chipotle maintain its commitment to “Food with Integrity” when the supply of sustainable foods failed to meet demand or should the company just buy available ingredients regardless of farming methods? Research methodology This case was developed from both secondary and primary sources. The secondary sources included industry reports, company annual reports, news reports, social media sites and company websites. Primary sources included video interviews with Chipotle executives (available on the company's website) and visits to Chipotle restaurants in several cities. This case has been classroom tested with MBA students in a capstone course and with undergraduates in a strategic management course. Relevant courses and levels This case was written for use in Strategic Management classes at the undergraduate and MBA levels. The focus of the case aligns well with discussions of competitive advantage, firm performance and business level strategy. The case also has application in discussions regarding implementation of strategy. Instructors that choose to emphasize sustainability strategies could assign this case to explore trade-offs between profitability, sustainability and growth. Additionally, the case could be used in supply chain management courses. Theoretical bases This case utilizes a stakeholder analysis approach to examine the trade-offs between sustainability initiatives, growth and performance. The resource-based model of VRIO is used to analyze the firm's competitive advantage.


IAWA Journal ◽  
2012 ◽  
Vol 33 (2) ◽  
pp. 163-186 ◽  
Author(s):  
Bernard J. De Villiers ◽  
Alexei A. Oskolski ◽  
Patricia M. Tilney ◽  
Ben-Erik Van Wyk

The wood structure of two related African genera, Cussonia Thunb. (15 of 21 species) and the monotypic Seemannaralia R.Vig. (Araliaceae) is examined. The considerable diversity in wood anatomical characters within these taxa is mostly related to environmental factors; taxonomic groupings or phylogenetic relationships seem to be less important. The shortening of vessel elements and fibres, an increase in vessel number per group, a decrease in vessel diameter and a reduction in the number of bars of perforation plates, are associated with the more temperat species. The changes in vessel grouping show a significant correlation with rainfall. The placement of the simple-leaved Cussonia species in the subgenus Protocussonia and the isolated position of C. paniculata Eckl. & Zeyh., the only member of the subgenus Paniculatae, are supported. Many Cussonia species share a very low fibre to vessel element length ratio. Despite the basal position of Seemannaralia relative to Cussonia revealed by molecular data (Plunkett et al. 2004), its wood structure is more specialised in terms of the Baileyan major trends in wood evolution. This discrepancy may be the effect of a long-term adaptation of tropical ancestors of Seemannaralia to drier biomes.


Holzforschung ◽  
2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Robyn E. Goacher ◽  
Yaseen Mottiar ◽  
Shawn D. Mansfield

AbstractEsterified phenolics occur as γ-linked lignin acylations in many plant taxa but little is known about the distribution or function of such groups. In the family Salicaceae, p-hydroxybenzoate groups are present in the lignin of poplars (Populus spp.) and willows (Salix spp.). In this study, the distribution of cell wall-bound p-hydroxybenzoate was examined in different tissue and cell types of poplar and willow trees. This analysis showed that p-hydroxybenzoate groups were most prevalent in juvenile stems, and were elevated in tension wood and following nitrogen fertilisation. Closer examination of stem cross-sections using time-of-flight secondary-ion mass spectrometry (ToF-SIMS) directly showed that p-hydroxybenzoate groups occur predominantly in the cell walls of fibres and are largely absent from vessel elements. These results point to a role for ester-linked groups in modifying the syringyl-rich lignin of fibres, perhaps to strengthen the cell walls of these structural elements or to increase lignification rates.


Plants ◽  
2020 ◽  
Vol 9 (3) ◽  
pp. 374
Author(s):  
Susumu Saito ◽  
Teruo Niki ◽  
Daniel K. Gladish

Root apical meristem histological organization in Zea mays has been carefully studied previously. Classical histology describes its system as having a “closed organization” and a development of xylem that conforms to predictable rules. Among the first cell types to begin differentiation are late-maturing metaxylem (LMX) vessels. As part of a larger study comparing domestic maize root development to a wild subspecies of Z. mays (teosinte), we encountered a metaxylem development abnormality in a small percentage of our specimens that begged further study, as it interrupted normal maturation of LMX. Primary root tips of young seedlings of Zea mays ssp. mexicana were fixed, embedded in appropriate resins, and sectioned for light and transmission electron microscopy. Longitudinal and serial transverse sections were analyzed using computer imaging to determine the position and timing of key xylem developmental events. We observed a severe abnormality of LMX development among 3.5% of the 227 mexicana seedlings we screened. All LMX vessel elements in these abnormal roots collapsed and probably became non-functional shortly after differentiation began. Cytoplasm and nucleoplasm in the abnormal LMX elements became condensed and subdivided into irregularly-shaped “macrovesicles” as their cell walls collapsed inward. We propose that these seedlings possibly suffered from a mutation that affected the timing of the programmed cell death (PCD) that is required to produce functional xylem vessels, such that autolysis of the cytoplasm was prematurely executed, i.e., prior to the development and lignification of secondary walls.


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