Molecular approaches to the manipulation of carbon allocation in plants

1993 ◽  
Vol 71 (6) ◽  
pp. 765-778 ◽  
Author(s):  
S. D. Blakeley ◽  
D. T. Dennis

In plants, sucrose is the end product of photosynthesis and is converted to a wide variety of storage compounds in tissues such as seeds and tubers. The allocation of carbon from sucrose to the various metabolic pathways leading to these products will determine the quantity of each synthesized in the respective storage organs. If the level of the enzymes involved in the allocation of carbon could be changed by genetic manipulation, it is probable that the relative yields of the various storage products can also be altered. The initial breakdown of sucrose occurs in the cytosol of the cell. Many biosynthetic pathways, however, including those involved in the synthesis of storage products such as fatty acids, starch, and amino acids, occur in the plastid. The distribution of carbon substrates for these processes will be determined, to a large extent, by the flux of carbon through the glycolytic pathways found in both the cytosolic and plastid compartments. This article will discuss the importance and consequences of compartmentation, review the extent of our understanding of glycolysis and other enzymes and pathways regulating carbon allocation, and will speculate on the potential for the genetic manipulation of these pathways. Key words: genetic manipulation, carbon allocation, metabolism, glycolysis.

1989 ◽  
Vol 35 (8) ◽  
pp. 754-759 ◽  
Author(s):  
J. W. Paul ◽  
E. G. Beauchamp ◽  
J. T. Trevors

Acetate, propionate, and butyrate were compared with glucose and sucrose as carbon substrates for denitrifying bacterial activity in an agricultural soil. After 216 h of incubation in the laboratory, the denitrification capacity per mole of carbon differed in the order sucrose < glucose < acetate < propionate < butyrate. In the acetate-, propionate-, and butyrate-amended soil, the denitrification activity was positively related to the amount of electrons available per mole of carbon. The low denitrification activity in soil amended with glucose was probably caused by competition for carbon between denitrifying and fermentative bacterial populations. Significant production of acetate occurred in soil amended with both glucose and nitrate, suggesting that denitrification and fermentation could occur simultaneously under anaerobic conditions.Key words: Short-chain fatty acids, denitrification, carbon sources, metabolic pathways, fermentation.


1971 ◽  
Vol 28 (8) ◽  
pp. 1191-1195 ◽  
Author(s):  
W. V. Allen

Tissues of the Dungeness crab (Cancer magister Dana) were analyzed for content of total lipid, protein, amino acids, fatty acids, and glucosamine. Ovaries and hepatopancreas were the major lipid storage organs. Gonads (ovaries and testes) and skeletal muscle contained substantially more protein than the other tissues. All tissues except the exoskeleton had balanced amino acid compositions. The exoskeletal protein was deficient in arginine and lysine. Glucosamine was a prominent constituent of the exoskeleton and of the gills and the gastric apparatus. Palmitic, palmitoleic, oleic, eicosapentaenoic, and docosahexaenoic acids were the major fatty acids found in all tissues.


2021 ◽  
Author(s):  
◽  
Oliver Bone

<p>Cnidarian-dinoflagellate symbioses occur across a wide latitudinal range, from temperate to tropical locations in both hemispheres. In the tropics, this association provides the foundation for the development of highly diverse coral reef ecosystems. Tropical associations are particularly sensitive to thermal variability, however, leading to dysfunction of the relationship and eventual expulsion of the symbiont, known as ‘coral bleaching’. In contrast, temperate associations maintain stable symbiotic relationships in highly fluctuating thermal environments. The reason behind the relative thermal tolerance of temperate associations is still unclear, though the ability to maintain cellular homeostasis through adjustments to metabolic processes is likely a core feature of their resilience.  Both a field study and laboratory experiment were conducted to determine the metabolic responses to thermal change of the symbiosis between the temperate anemone Anthopleura aureoradiata and the dinoflagellate Symbiodinium. For the field component, A. aureoradiata were collected from Point Halswell in Wellington Harbour in both summer and winter. For the laboratory experiment, specimens collected at Pautahanui inlet were thermally acclimated in the laboratory, after which temperatures were altered over the course of one week to either 8°C (cold) or 28°C (hot) and maintained at these temperatures for six weeks. Gas chromatography coupled to mass spectrometry was then employed to determine the identity and relative quantity of a wide range of metabolites involved in primary metabolism including organic acids, fatty acids, amino acids and sugars. Based on these data, pathway activity profiling was used to determine the activity of different metabolic pathways both between seasons and in response to cold and heat treatment.  A wide range of changes to metabolic processes were observed in both host and symbiont. Photosynthetic capacity was reduced in the symbionts at low temperatures and increased at high temperatures. The only organic acid to be significantly impacted was propanedioic acid, which increased in the host in response to cold treatment, potentially related to increased translocation from the symbiont. Altered fatty acid content in both host and symbiont was related to the role of fatty acids as energy sources and storage compounds and in cell signalling processes. Changes in fatty acid-associated metabolic pathways were exemplified by arachidonic acid and linoleic acid metabolism. Alterations to free amino acids and amino acid related pathways in both host and symbiont were associated with their role as antioxidants and osmoprotectants and the catabolism of amino acids for the production of energy. In symbionts only, altered amino acid content was associated with the role of amino acids in the production of alkaloids. Changes in a number of sugar derivatives in both host and symbiont were associated with their role as antioxidants and osmoprotectants. Altered sugar metabolism in the symbiont clearly indicated an increase in the production of energy rich sugar molecules and production of cellular energy in summer/hot conditions and a decrease in winter/cold conditions. Notably impacted pathways included the Calvin cycle, glycolysis, the pentose phosphate pathway and oxidative phosphorylation. Patterns of sugar related pathway activity in the host were generally opposite to that observed in the symbiont. Overall, prominent but opposing changes in the host and symbiont were detected in the central carbohydrate and energy metabolic pathways. In general, the activity of these pathways increased in the host in winter/cold conditions and decreased in summer/hot conditions, while in the symbiont the pattern was the opposite.  These findings highlight the role of metabolic processes in enabling the persistence of a temperate cnidarian-dinoflagellate symbiosis in the face of large temperature fluctuations. This work provides a foundation upon which a deeper understanding of metabolic functioning in the cnidarian-dinoflagellate symbiosis can be built and provides a comparative platform for studies of the more thermally sensitive tropical associations.</p>


2021 ◽  
Author(s):  
◽  
Oliver Bone

<p>Cnidarian-dinoflagellate symbioses occur across a wide latitudinal range, from temperate to tropical locations in both hemispheres. In the tropics, this association provides the foundation for the development of highly diverse coral reef ecosystems. Tropical associations are particularly sensitive to thermal variability, however, leading to dysfunction of the relationship and eventual expulsion of the symbiont, known as ‘coral bleaching’. In contrast, temperate associations maintain stable symbiotic relationships in highly fluctuating thermal environments. The reason behind the relative thermal tolerance of temperate associations is still unclear, though the ability to maintain cellular homeostasis through adjustments to metabolic processes is likely a core feature of their resilience.  Both a field study and laboratory experiment were conducted to determine the metabolic responses to thermal change of the symbiosis between the temperate anemone Anthopleura aureoradiata and the dinoflagellate Symbiodinium. For the field component, A. aureoradiata were collected from Point Halswell in Wellington Harbour in both summer and winter. For the laboratory experiment, specimens collected at Pautahanui inlet were thermally acclimated in the laboratory, after which temperatures were altered over the course of one week to either 8°C (cold) or 28°C (hot) and maintained at these temperatures for six weeks. Gas chromatography coupled to mass spectrometry was then employed to determine the identity and relative quantity of a wide range of metabolites involved in primary metabolism including organic acids, fatty acids, amino acids and sugars. Based on these data, pathway activity profiling was used to determine the activity of different metabolic pathways both between seasons and in response to cold and heat treatment.  A wide range of changes to metabolic processes were observed in both host and symbiont. Photosynthetic capacity was reduced in the symbionts at low temperatures and increased at high temperatures. The only organic acid to be significantly impacted was propanedioic acid, which increased in the host in response to cold treatment, potentially related to increased translocation from the symbiont. Altered fatty acid content in both host and symbiont was related to the role of fatty acids as energy sources and storage compounds and in cell signalling processes. Changes in fatty acid-associated metabolic pathways were exemplified by arachidonic acid and linoleic acid metabolism. Alterations to free amino acids and amino acid related pathways in both host and symbiont were associated with their role as antioxidants and osmoprotectants and the catabolism of amino acids for the production of energy. In symbionts only, altered amino acid content was associated with the role of amino acids in the production of alkaloids. Changes in a number of sugar derivatives in both host and symbiont were associated with their role as antioxidants and osmoprotectants. Altered sugar metabolism in the symbiont clearly indicated an increase in the production of energy rich sugar molecules and production of cellular energy in summer/hot conditions and a decrease in winter/cold conditions. Notably impacted pathways included the Calvin cycle, glycolysis, the pentose phosphate pathway and oxidative phosphorylation. Patterns of sugar related pathway activity in the host were generally opposite to that observed in the symbiont. Overall, prominent but opposing changes in the host and symbiont were detected in the central carbohydrate and energy metabolic pathways. In general, the activity of these pathways increased in the host in winter/cold conditions and decreased in summer/hot conditions, while in the symbiont the pattern was the opposite.  These findings highlight the role of metabolic processes in enabling the persistence of a temperate cnidarian-dinoflagellate symbiosis in the face of large temperature fluctuations. This work provides a foundation upon which a deeper understanding of metabolic functioning in the cnidarian-dinoflagellate symbiosis can be built and provides a comparative platform for studies of the more thermally sensitive tropical associations.</p>


2010 ◽  
Vol 7 (9) ◽  
pp. 2591-2600 ◽  
Author(s):  
V. Riou ◽  
S. Bouillon ◽  
R. Serrão Santos ◽  
F. Dehairs ◽  
A. Colaço

Abstract. Bathymodiolus azoricus mussels thrive at Mid-Atlantic Ridge hydrothermal vents, where part of their energy requirements are met via an endosymbiotic association with chemolithotrophic and methanotrophic bacteria. In an effort to describe phenotypic characteristics of the two bacterial endosymbionts and to assess their ability to assimilate CO2, CH4 and multi-carbon compounds, we performed experiments in aquaria using 13C-labeled NaHCO3 (in the presence of H2S), CH4 or amino-acids and traced the incorporation of 13C into total and phospholipid fatty acids (tFA and PLFA, respectively). 14:0; 15:0; 16:0; 16:1(n − 7)c+t; 18:1(n − 13)c+t and (n − 7)c+t; 20:1(n − 7); 20:2(n − 9,15); 18:3(n − 7) and (n − 5,10,13) PLFA were labeled in the presence of H13CO3− (+H2S) and 13CH4, while the 12:0 compound became labeled only in the presence of H13CO3− (+H2S). In contrast, the 17:0; 18:0; 16:1(n − 9); 16:1(n − 8) and (n − 6); 18:1(n − 8); and 18:2(n − 7) PLFA were only labeled in the presence of 13CH4. Some of these symbiont-specific fatty acids also appeared to be labeled in mussel gill tFA when incubated with 13C-enriched amino acids, and so were mussel-specific fatty acids such as 22:2(n − 7,15). Our results provide experimental evidence for the potential of specific fatty acid markers to distinguish between the two endosymbiotic bacteria, shedding new light on C1 and multi-carbon compound metabolic pathways in B. azoricus and its symbionts.


2021 ◽  
Author(s):  
Pan Zhang ◽  
Qinggang Li ◽  
Yijing Wu ◽  
Yawen Zhang ◽  
Bo Zhang ◽  
...  

Abstract Background: Subcutaneous fat and intramuscular fat (IMF) deposition are closely related to meat production and pork quality. The Dingyuan pig is a local pig breed in Anhui Province, China, that has great potential for fat deposition. Individuals with extreme subcutaneous fat and intramuscular fat content can be found in this breed, which provides a good study system for investigating the molecular mechanisms regulating these two types of fat deposit.Results: In this study, we used RNA-Seq and tandem mass tags-based proteomics to analyze the key pathways and genes that specifically regulate subcutaneous fat and intramuscular fat deposition in Dingyuan pigs. We identified 191 differentially expressed genes (DEGs) and 61 differentially abundant proteins (DAPs) in the high backfat thickness (HBF) and low backfat thickness (LBF) groups. In the high intramuscular fat and low intramuscular fat groups, we found 85 DEGs and 12 DAPs. The gene ontology and KEGG pathway enrichment analysis showed that the DEGs and DAPs in the backfat groups were mainly involved in various metabolic pathways, such as those related to carbohydrates, amino acids, esters, and fatty acids, whereas the DEGs and DAPs of the IMF groups were involved in a wide range of signaling pathways, including metabolic pathways, the insulin pathway, ketone body synthesis and degradation, longevity, and some disease-related pathways. Among the genes related to the metabolic pathways of carbohydrates, amino acids, esters, and fatty acids, we found 26 candidate genes that specifically regulate subcutaneous fat deposition and 7 genes that specifically regulate IMF deposition in Dingyuan pigs.Conclusion: Our data show that subcutaneous fat deposition and IMF deposition are regulated by the same genes, but there are also genes that specifically regulate these two fat depositions. Our data provide insights into the mechanisms of pig fat deposition.


2021 ◽  
Author(s):  
Pan Zhang ◽  
Qinggang Li ◽  
Yijing Wu ◽  
Yawen Zhang ◽  
Hao Zhang ◽  
...  

Abstract Background: Subcutaneous fat and intramuscular fat (IMF) deposition are closely related to meat production and pork quality. The Dingyuan pig is a local pig breed in Anhui Province, China, that has great potential for fat deposition. Individuals with extreme subcutaneous fat and intramuscular fat content can be found in this breed, which provides a good study system for investigating the molecular mechanisms regulating these two types of fat deposit.Results: In this study, we used RNA-Seq and tandem mass tags-based proteomics to analyze the key pathways and genes that specifically regulate subcutaneous fat and intramuscular fat deposition in Dingyuan pigs. We identified 191 differentially expressed genes (DEGs) and 61 differentially abundant proteins (DAPs) in the high backfat thickness (HBF) and low backfat thickness (LBF) groups. In the high intramuscular fat and low intramuscular fat groups, we found 85 DEGs and 12 DAPs. The gene ontology and KEGG pathway enrichment analysis showed that the DEGs and DAPs in the backfat groups were mainly involved in various metabolic pathways, such as those related to carbohydrates, amino acids, esters, and fatty acids, whereas the DEGs and DAPs of the IMF groups were involved in a wide range of signaling pathways, including metabolic pathways, the insulin pathway, ketone body synthesis and degradation, longevity, and some disease-related pathways. Among the genes related to the metabolic pathways of carbohydrates, amino acids, esters, and fatty acids, we found 26 candidate genes that specifically regulate subcutaneous fat deposition and 7 genes that specifically regulate IMF deposition in Dingyuan pigs.Conclusion: Our data show that subcutaneous fat deposition and IMF deposition are regulated by the same genes, but there are also genes that specifically regulate these two fat depositions. Our data provide insights into the mechanisms of pig fat deposition.


Diabetes ◽  
2019 ◽  
Vol 68 (Supplement 1) ◽  
pp. 1010-P
Author(s):  
VICTORIA E. PARKER ◽  
DARREN ROBERTSON ◽  
TAO WANG ◽  
DAVID C. HORNIGOLD ◽  
MAXIMILIAN G. POSCH ◽  
...  

Author(s):  
Kamila B. Muchowska ◽  
Sreejith Jayasree VARMA ◽  
Joseph Moran

How core biological metabolism initiated and why it uses the intermediates, reactions and pathways that it does remains unclear. Life builds its molecules from CO<sub>2 </sub>and breaks them down to CO<sub>2 </sub>again through the intermediacy of just five metabolites that act as the hubs of biochemistry. Here, we describe a purely chemical reaction network promoted by Fe<sup>2+ </sup>in which aqueous pyruvate and glyoxylate, two products of abiotic CO<sub>2 </sub>reduction, build up nine of the eleven TCA cycle intermediates, including all five universal metabolic precursors. The intermediates simultaneously break down to CO<sub>2 </sub>in a life-like regime resembling biological anabolism and catabolism. Introduction of hydroxylamine and Fe<sup>0 </sup>produces four biological amino acids. The network significantly overlaps the TCA/rTCA and glyoxylate cycles and may represent a prebiotic precursor to these core metabolic pathways.


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