Coupling genetic and otolith trace element analyses to identify river-born fish with hatchery pedigrees in stocked Atlantic salmon (Salmo salar) populations

2011 ◽  
Vol 68 (6) ◽  
pp. 977-987 ◽  
Author(s):  
Charles Perrier ◽  
Françoise Daverat ◽  
Guillaume Evanno ◽  
Christophe Pécheyran ◽  
Jean-Luc Bagliniere ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Trace Element ◽  
Salmo Salar ◽  
Inductively Coupled Plasma ◽  
Geographic Origin ◽  
Wild Populations ◽  
Inductively Coupled ◽  
Elemental Concentrations ◽  
Atlantic Salmon Salmo Salar ◽  
Hatchery Stock

This study combines otolith trace element and genetic analyses to explore the origin of individuals when hatchery-reared fish are released into wild populations. We sampled 90 juvenile Atlantic salmon ( Salmo salar ) in four rivers in Normandy (France) and in the hatchery stock. Individuals were analyzed at six microsatellite markers and their otolith elemental concentrations (14 elements) were measured using femto-second laser ablation inductively-coupled plasma mass spectrometry. Wild populations were genetically differentiated from the hatchery strain (FST ≈ 0.06). Significant differences in elemental concentrations were found among otoliths of juveniles from the four rivers and the hatchery, allowing the identification of their geographic origin (83%–100% correct assignment). Coupling genetic and trace element analyses on the same individuals provided formal evidence that hatchery-born juveniles released into the wild can migrate to the sea and return as adults to breed on natural spawning grounds. Their progeny have pure hatchery pedigrees but have otoliths typical of river-born juveniles, meaning that they can be mistaken for hatchery-raised juveniles if only genetic data are considered. The presence of hybrids also confirmed that individuals with hatchery pedigrees can breed with wild conspecifics.

Trace Element Analysis of Scales from Four Populations of Norwegian Atlantic Salmon (Salmo Salar L.) for Stock Identification Using Laser Ablation Inductively Coupled Plasma Mass Spectrometry

2005 ◽  
Vol 59 (2) ◽  
pp. 245-251 ◽  
Author(s):  
Belinda Flem ◽  
Vidar Moen ◽  
Andreas Grimstvedt
Keyword(s):  
Mass Spectrometry ◽  
Laser Ablation ◽  
Atlantic Salmon ◽  
Elemental Composition ◽  
Fresh Water ◽  
Salmo Salar ◽  
Inductively Coupled Plasma ◽  
Inductively Coupled ◽  
Atlantic Salmon Salmo Salar ◽  
Plasma Mass Spectrometry

The pre-smolt stage of the scale of adult Norwegian Atlantic salmon from four populations, encompassing both farmed and wild hatchery stocks, has been analyzed by laser ablation inductively coupled plasma mass spectrometry (LA-HR-ICP-MS). The purpose of this study was to test for differences in elemental composition between stocks of Atlantic salmon that have lived in separate fresh water locations until the smoltification and natural run out or transportation to the sea-cages. The populations studied were from fish farms located at Bremanger and Sørfold, a cultivated stock from Mossa, and one wild local stock from the river Gaula. The following elements were included in the analytical protocol: Li, Mg, Ca, Cr, Mn, Fe, Zn, Sr, Ba, Pb, and U. Calcium was used as a natural internal standard. Classification of the analytical data is studied by multivariate statistical techniques such as principal component analysis (PCA). We have been able to delineate the population of Atlantic salmon ( Salmo salar L.) from Gaula and Mossa from the Bremanger and the Sørfold stock based on the ten elements analyzed. The Bremanger and Sørfold stocks were partially delineated. The differences in elemental composition in the scales, which makes the delineating of the four stocks possible, probably reflects geological differences in the bedrock at the four fresh water locations experienced by the salmon during the pre-smolt stage.

Trace Element Geochemistry and Mineral Inclusions Constraints on the Petrogenesis of a Marble–Hosted Ruby Deposit in Yunnan Province, China

2021 ◽  
Author(s):  
Wenqing Huang ◽  
Pei Ni ◽  
Ting Shui ◽  
Junyi Pan ◽  
Mingsen Fan ◽  
...  
Keyword(s):  
Trace Element ◽  
Inductively Coupled Plasma ◽  
Yunnan Province ◽  
Geographic Origin ◽  
Source Rocks ◽  
Trace Element Geochemistry ◽  
Mineral Inclusion ◽  
Element Geochemistry ◽  
Inductively Coupled ◽  
Mineral Inclusions

Abstract Primary rubies in the Ailao Shan of Yunnan Province, China, are found in three layers of marble. However, the origin and source rocks of placer rubies in the Yuanjiang area remains unclear. Trace element geochemistry and inclusion mineralogy within these materials can provide information on their petrogenesis and original source. Zircon, rutile, mica group minerals, titanite, and apatite group minerals were the main solid inclusions identified within the placer Yuanjiang rubies, along with other mineral inclusions such as pyrite, pyrrhotite, plagioclase group minerals, and scapolite group minerals. Laser ablation inductively coupled plasma-mass spectrometry (LA-ICP-MS) measurements showed that the placer rubies are characterized by average values of Mg (31 ppmw), Ti (97 ppmw), V (77 ppmw), Cr (3326 ppmw), Fe (71 ppmw), and Ga (66ppmw). A trace-element oxide diagram, Fe values (<350 ppmw), and the mineral inclusion assemblage suggest marble sources for the placer ruby. Therefore, the Yuanjiang rubies (both primary and placer) are metamorphic, and this fits well with the observations that skarn and related minerals are mostly absent in this deposit. Yuanjiang rubies can be readily separated from the high-iron rubies of different geological types by their Fe content (<1000 ppmw). The discriminators Mg, Ga, Cr, V, Fe, and Ti have potential in separating Yuanjiang rubies from some other marble-hosted deposits, such as Snezhnoe. Nevertheless, geographic origin determination remains a challenge when considering the similarities in compositional features between the Yuanjiang rubies and rubies from some other marble-hosted deposits worldwide (e.g., Luc Yen). The presence of kaolinite group minerals and clusters of euhedral, prismatic zircon crystals in ruby suggest a Yuanjiang origin.

scholarly journals Using trace elements to identify the geographic origin of migratory bats

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e10082
Author(s):  
Jamin G. Wieringa ◽  
Juliet Nagel ◽  
David M. Nelson ◽  
Bryan C. Carstens ◽  
H. Lisle Gibbs
Keyword(s):  
Trace Elements ◽  
Wind Energy ◽  
Trace Element ◽  
Inductively Coupled Plasma ◽  
Geographic Origin ◽  
Lasiurus Borealis ◽  
Inductively Coupled ◽  
Plasma Mass Spectrometry ◽  
Trace Element Profiles ◽  
Geographic Sources

The expansion of the wind energy industry has had benefits in terms of increased renewable energy production but has also led to increased mortality of migratory bats due to interactions with wind turbines. A key question that could guide bat-related management activities is identifying the geographic origin of bats killed at wind-energy facilities. Generating this information requires developing new methods for identifying the geographic sources of individual bats. Here we explore the viability of assigning geographic origin using trace element analyses of fur to infer the summer molting location of eastern red bats (Lasiurus borealis). Our approach is based on the idea that the concentration of trace elements in bat fur is related through the food chain to the amount of trace elements present in the soil, which varies across large geographic scales. Specifically, we used inductively coupled plasma–mass spectrometry to determine the concentration of fourteen trace elements in fur of 126 known-origin eastern red bats to generate a basemap for assignment throughout the range of this species in eastern North America. We then compared this map to publicly available soil trace element concentrations for the U.S. and Canada, used a probabilistic framework to generate likelihood-of-origin maps for each bat, and assessed how well trace element profiles predicted the origins of these individuals. Overall, our results suggest that trace elements allow successful assignment of individual bats 80% of the time while reducing probable locations in half. Our study supports the use of trace elements to identify the geographic origin of eastern red and perhaps other migratory bats, particularly when combined with data from other biomarkers such as genetic and stable isotope data.

scholarly journals Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic

2019 ◽  
Vol 76 (5) ◽  
pp. 695-704 ◽  
Author(s):  
Brendan F. Wringe ◽  
Eric C. Anderson ◽  
Nicholas W. Jeffery ◽  
Ryan R.E. Stanley ◽  
Ian R. Bradbury
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
Wild Populations ◽  
Western Atlantic ◽  
Farmed Salmon ◽  
Atlantic Salmon Salmo Salar ◽  
Hybrid Class ◽  
Snp Panels ◽  
The Stability ◽  
Development And Validation

Hybridization between wild and escaped cultured Atlantic salmon (Salmo salar) can threaten the stability and persistence of locally adapted wild populations. Here we describe the development and validation of a genomic-based approach to quantify recent hybridization between escapee and wild salmon in the western Atlantic. Based on genome-wide single nucleotide polymorphism (SNP) scans of wild and cultured salmon, collectively diagnostic panels were created for Newfoundland and the Canadian Maritimes. These panels were capable of both discriminating hybrids from nonhybrids and of correctly assigning individuals to hybrid class (i.e., pure wild, pure farm, F1, F2, and backcrosses) with a high degree of accuracy (Newfoundland 96 SNPs > 90%, Maritimes 720 SNPs > 80%). These genomic panels permit the assessment of the impacts of past and future farmed salmon escape events on wild populations and can inform the protection and conservation of wild Atlantic salmon genetic integrity in the western Atlantic.

Genetic changes in Atlantic salmon (Salmo salar) populations of Northwest Irish rivers resulting from escapes of adult farm salmon

1998 ◽  
Vol 55 (2) ◽  
pp. 358-363 ◽  
Author(s):  
S L Clifford ◽  
P McGinnity ◽  
A Ferguson
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
Dna Markers ◽  
Individual Sample ◽  
Wild Populations ◽  
Genetic Changes ◽  
Atlantic Salmon Salmo Salar ◽  
Farm Salmon ◽  
Time Period ◽  
Mtdna Haplotype

A study was made of rivers in Northwest Ireland where escapes of adult Atlantic salmon (Salmo salar) are known to have occurred from adjacent sea cages. Two markers that showed substantial frequency differences between these farm and wild populations were used: an Ava II-B mtDNA haplotype and allele E at minisatellite locus Ssa-A45/2/1. Farmed populations also showed a significant reduction in mean heterozygosity over the three minisatellite loci examined. Independent occurrence of mtDNA and minisatellite DNA markers in several juvenile samples indicated interbreeding of escaped farm salmon with wild salmon. The proportion of juveniles of maternal farm parentage in two rivers ranged from 18% in 1993 to 2% in 1995 with an average of 7% in both rivers (1993-1995) and a maximum frequency of 70% in an individual sample. Only a small proportion of 29 000 adult farm salmon that escaped in spring 1992 appear to have bred successfully in the rivers studied. Juveniles of farmed parentage survived to at least the 1+ summer stage, but the subsequent fate of these fish could not be determined in the time period of the study.

scholarly journals Distribution by origin and sea age of Atlantic salmon (Salmo salar) in the sea around the Faroe Islands based on analysis of historical tag recoveries

2012 ◽  
Vol 69 (9) ◽  
pp. 1598-1608 ◽  
Author(s):  
Jan Arge Jacobsen ◽  
Lars P. Hansen ◽  
Vegar Bakkestuen ◽  
Rune Halvorsen ◽  
David G. Reddin ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
Fishery Management ◽  
Geographic Origin ◽  
European Countries ◽  
Faroe Islands ◽  
Atlantic Salmon Salmo Salar ◽  
Northern European ◽  
Hydrographic Features ◽  
Salmon Fishery

Abstract Jacobsen, J. A., Hansen, L. P., Bakkestuen, V., Halvorsen, R., Reddin, D. G., White, J., Ó Maoiléidigh, N., Russell, I.C., Potter, E. C. E., Fowler, M., Smith, G. W., Mork, K. A., Isaksson, A., Oskarsson, S., Karlsson, L., and Pedersen, S. 2012. Distribution by origin and sea age of Atlantic salmon (Salmo salar) in the sea around the Faroe Islands based on analysis of historical tag recoveries. – ICES Journal of Marine Science, 69: 1598–1608. A database of 2651 tags applied to Atlantic salmon (Salmo salar) smolts in 13 countries or jurisdictions and recovered in the Faroes longline salmon fishery from 1968 to 2000 was analysed for geographic distribution and origin of the salmon captured with respect to differences in sea age, season of the fishery, and hydrographic features in the Faroes area. The results indicated that salmon were not distributed randomly in the Faroes area by fishing season, sea age, or country of origin. The distribution of salmon in the Faroes zone partly depends on their geographic origin; salmon from countries in the northern European stock complex were distributed significantly farther northeast than those from countries in the southern European stock complex. Furthermore, the proportion of tag recoveries from southern European countries was higher in autumn, and the proportion recovered from northern European countries higher in winter. The apparent temporal and spatial segregation of stocks of different origin suggests that there may have been differential exploitation on these stocks, which provides information that could inform fishery management with regard to temporal and/or spatial fishery options for the Faroes commercial salmon fishery should it recommence in future.

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