THEORETICAL INVESTIGATIONS ON THE MECHANISM OF ACTIVATION OF AMMONIA BY A p-DIMETHYLAMINOPYRIDINE COORDINATED SI=O DOUBLE BOND

2012 ◽  
Vol 11 (02) ◽  
pp. 437-481 ◽  
Author(s):  
YUN-QING HE ◽  
ZE-QIN CHEN ◽  
YING XUE

Recently, Xiong et al. reported an activation of ammonia by p-dimethylaminopyridine (DMAP) coordinated silanone (DMAP→Si(L)=O, DS) affording a unique pair of sila-hemiaminal (SH) and silanoic amide (SA) tautomers (Xiong Y, Yao S, Müller R, Kaupp M, Driess M, J Am Chem Soc132:6912, 2010). In this paper, the mechanisms of the activation of ammonia affording SH and SA, the successive generation of hydrogen bonded complex pair SH–SA and the tautomerization between SH and SA have been intensively investigated computationally for the first time at MP2/6-311+G(2d,p)//B3LYP/6-31+G(d,p) level in toluene. The concerted Paths C and D with ammonia assistance are determined by our calculations to be the dominant pathways corresponding to forming SH and SA from DS, respectively. The free energy barrier of Path C affording SH from DS is 14.45 kcal/mol, and that of Path D affording SA is 21.46 kcal/mol. So it is determined theoretically that Path C is dynamically dominant over Path D. And the pair SH–SA is formed then spontaneously by intermolecular hydrogen bond (O–H ⋯ O′) without any barrier. While the tautomerization between SH and SA is nonsignficant resulting from the corresponding relative high barriers (23.79 kcal/mol for process from SH to SA and 26.52 kcal/mol for process from SA to SH). Our results are in good agreement with and good interpretation of the experimental results by Xiong et al.

1997 ◽  
Vol 472 ◽  
Author(s):  
H. Y. Tong ◽  
Q. Jiang ◽  
D. Hsu ◽  
T. J. King ◽  
F. G. Shi

ABSTRACTThe composition dependence of the nucleation free energy barrier W* in amorphous Si1-xGex thin films is investigated. Within the composition range of x = 0.25 ∼ 0.52, the nucleation free energy barrier exhibits a maximum, which is in a good agreement with our theoretical analysis. The results are significant for processing polycrystalline SiGe thin films with desirable microstructures for thin film transistor applications. In addition, the incubation time of crystallization of amorphous Si1-xGex (x=0.5) thin films is investigated as a function of temperature.


2018 ◽  
Vol 17 (08) ◽  
pp. 1850050 ◽  
Author(s):  
Qiuhan Luo ◽  
Gang Li ◽  
Junping Xiao ◽  
Chunhui Yin ◽  
Yahui He ◽  
...  

Sulfonylureas are an important group of herbicides widely used for a range of weeds and grasses control particularly in cereals. However, some of them tend to persist for years in environments. Hydrolysis is the primary pathway for their degradation. To understand the hydrolysis behavior of sulfonylurea herbicides, the hydrolysis mechanism of metsulfuron-methyl, a typical sulfonylurea, was investigated using density functional theory (DFT) at the B3LYP/6-31[Formula: see text]G(d,p) level. The hydrolysis of metsulfuron-methyl resembles nucleophilic substitution by a water molecule attacking the carbonyl group from aryl side (pathway a) or from heterocycle side (pathway b). In the direct hydrolysis, the carbonyl group is directly attacked by one water molecule to form benzene sulfonamide or heterocyclic amine; the free energy barrier is about 52–58[Formula: see text]kcal[Formula: see text]mol[Formula: see text]. In the autocatalytic hydrolysis, with the second water molecule acting as a catalyst, the free energy barrier, which is about 43–45[Formula: see text]kcal[Formula: see text]mol[Formula: see text], is remarkably reduced by about 11[Formula: see text]kcal[Formula: see text]mol[Formula: see text]. It is obvious that water molecules play a significant catalytic role during the hydrolysis of sulfonylureas.


2013 ◽  
Vol 12 (08) ◽  
pp. 1341004
Author(s):  
XUE WU ◽  
TING FU ◽  
ZHI-LONG XIU ◽  
LIU YIN ◽  
JIN-GUANG WANG ◽  
...  

Prions are associated with neurodegenerative diseases induced by transmissible spongiform encephalopathies. The infectious scrapie form is referred to as PrP Sc , which has conformational change from normal prion with predominant α-helical conformation to the abnormal PrP Sc that is rich in β-sheet content. Neurodegenerative diseases have been found from both human and bovine sources, but there are no reports about infected by transmissible spongiform encephalopathies from rabbit, canine and horse sources. Here we used coarse-grained Gō model to compare the difference among human, bovine, rabbit, canine, and horse normal (cellular) prion proteins. The denatured state of normal prion has relation with the conversion from normal to abnormal prion protein, so we used all-atom Gō model to investigate the folding pathway and energy landscape for human prion protein. Through using coarse-grained Gō model, the cooperativity of the five prion proteins was characterized in terms of calorimetric criterion, sigmoidal transition, and free-energy profile. The rabbit and horse prion proteins have higher folding free-energy barrier and cooperativity, and canine prion protein has slightly higher folding free-energy barrier comparing with human and bovine prion proteins. The results from all-atom Gō model confirmed the validity of C α-Gō model. The correlations of our results with previous experimental and theoretical researches were discussed.


2017 ◽  
Vol 18 (1) ◽  
pp. 58-63
Author(s):  
N.Yu. Filonenko

In the paper the physical properties and thermodynamic functions of borides Х2В (Х=W, Mo, Mn, Fe, Co, Ni та Cr) are studied with accounting for fluctuation processes. We use the microstructure analysis, the X-ray structural and the durometric analyses to determine the physical properties of alloys. In the paper it is determined the phase composition and physical properties of borides. In this paper for the first time it is determined the thermodynamic functions of borides using the Hillert and Staffansson model with accounting for the first degree approximation of high-temperature expansion for the free energy potential of binary alloys. We obtain the temperature dependences for such thermodynamic functions as Gibbs free energy, entropy, enthalpy and heat capacity Ср along with their values at the formation temperature for Х2В (Х=W, Mo, Mn, Fe, Co, Ni та Cr). The approach under consideration enables to give more thorough from the thermodynamic point of view description of borides formed from the liquid. The outcomes of the thermodynamic function calculation for borides are in good agreement with experimental data and results of other authors.


2020 ◽  
Vol 5 (4) ◽  
pp. 651-662 ◽  
Author(s):  
Gourav Shrivastav ◽  
Tuhin S. Khan ◽  
Manish Agarwal ◽  
M. Ali Haider

Utilizing the differential stabilization of reactant and transition state in the polar and apolar solvents to lower the activation free energy barrier for acid-catalyzed dehydration of hydroxy lactones.


2010 ◽  
Vol 184 ◽  
pp. 400-414 ◽  
Author(s):  
Andreas Nußbaumer ◽  
Elmar Bittner ◽  
Wolfhard Janke

2020 ◽  
Vol 11 (43) ◽  
pp. 11902-11914 ◽  
Author(s):  
José D. Camino ◽  
Pablo Gracia ◽  
Serene W. Chen ◽  
Jesús Sot ◽  
Igor de la Arada ◽  
...  

The extent of protein hydration modulates the free energy barrier of both heterogeneous and homogeneous α-synuclein nucleation, leading to the formation of distinct amyloid polymorphs depending on the water activity of the protein microenvironment.


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