scholarly journals Determination of Acquisition Frequency for Intrafractional Motion of Pancreas in CyberKnife Radiotherapy

2014 ◽  
Vol 2014 ◽  
pp. 1-8
Author(s):  
Huailing Zhang ◽  
Guoru Zhao ◽  
David Djajaputra ◽  
Yaoqin Xie
Keyword(s):  
Effective Means ◽  
Time Interval ◽  
Data Sets ◽  
Data Set ◽  
X Ray ◽  
Adequate Dose ◽  
Time Stamps ◽  
Movement Distance ◽  
Intrafractional Motion

Purpose.To report the characteristics of pancreas motion as tracked using implanted fiducials during radiotherapy treatments with CyberKnife.Methods and Materials. Twenty-nine patients with pancreas cancer treated using CyberKnife system were retrospectively selected for this study. During the treatment, the deviation is examined every 3-4 nodes (~45 s interval) and compensated by the robot. The pancreas displacement calculated from X-ray images acquired within the time interval between two consecutive couch motions constitute a data set.Results. A total of 498 data sets and 4302 time stamps of X-ray images were analyzed in this study. The average duration for each data set is 634 s. The location of the pancreas becomes more dispersed as the time elapses. The acquisition frequency depends on the prespecified movement distance threshold of pancreas. If the threshold between two consecutive images is 1 mm, the acquisition frequency should be less than 30 s, while if the threshold is 2 mm, the acquisition frequency can be around 1 min.Conclusions. The pancreas target moves significantly and unpredictably during treatment. Effective means of compensating the intrafractional movement is critical to ensure adequate dose coverage of the tumor target.

Determination of depth profiles from X-ray diffraction data

1993 ◽  
Vol 8 (2) ◽  
pp. 122-126 ◽  
Author(s):  
Paul Predecki
Keyword(s):  
Diffraction Data ◽  
Direct Method ◽  
Sample Surface ◽  
Data Sets ◽  
X Ray Diffraction ◽  
Data Set ◽  
X Ray ◽  
Depth Profiles ◽  
A Direct Method

A direct method is described for determining depth profiles (z-profiles) of diffraction data from experimentally determined τ-profiles, where z is the depth beneath the sample surface and τ is the 1/e penetration depth of the X-ray beam. With certain assumptions, the relation between these two profile functions can be expressed in the form of a Laplace transform. The criteria for fitting experimental τ-data to functions which can be utilized by the method are described. The method was applied to two τ-data sets taken from the literature: (1) of residual strain in an A1 thin film and (2) of residual stress in a surface ground A12O3/5vol% TiC composite. For each data set, it was found that the z-profiles obtained were of two types: oscillatory and nonoscillatory. The nonoscillatory profiles appeared to be qualitatively consistent for a given data set. The oscillatory profiles were considered to be not physically realistic. For the data sets considered, the nonoscillatory z-profiles were found to lie consistently above the corresponding τ-profiles, and to approach the τ-profiles at large z, as expected from the relation between the two.

Determination of the distribution of elements with similar electron counts: a practical guide for resonant X-ray scattering

2013 ◽  
Vol 46 (3) ◽  
pp. 769-778 ◽  
Author(s):  
Simon Welzmiller ◽  
Philipp Urban ◽  
Felix Fahrnbauer ◽  
Loredana Erra ◽  
Oliver Oeckler
Keyword(s):  
Element Distribution ◽  
Data Sets ◽  
Data Set ◽  
X Ray ◽  
X Ray Scattering ◽  
Multiple Data ◽  
Straightforward Method ◽  
Distribution Of Elements ◽  
Ray Scattering

This article attempts to present straightforward and easy-to-understand guidelines for the determination of element distribution in compounds lacking X-ray scattering contrast because they have similar electron counts. Different sources of anomalous dispersion correction terms (especially Δf′ values) are compared with respect to their suitability, reliability and quality. Values from databases are compared with Δfvalues calculated from fluorescence spectra and those refined from single-crystal diffraction data, using both reference crystals without scattering contrast problems and crystals containing elements with similar electron counts. The number of data sets required to determine reliably the element distribution and the optimum wavelengths to be used are discussed. Joint multiple data set refinements are suitable for the refinement of multiply mixed occupancies of elements lacking scattering contrast. The most straightforward method of obtaining Δf′ values depends on the complexity of the problem to be solved and the precision required.

scholarly journals TheLaueUtiltoolkit for Laue photocrystallography. I. Rapid orientation matrix determination for intermediate-size-unit-cell Laue data

2011 ◽  
Vol 44 (6) ◽  
pp. 1182-1189 ◽  
Author(s):  
Jarosław A. Kalinowski ◽  
Anna Makal ◽  
Philip Coppens
Keyword(s):  
Open Source ◽  
Unit Sphere ◽  
Reciprocal Lattice ◽  
Unit Cell ◽  
Data Sets ◽  
Data Set ◽  
X Ray ◽  
Orientation Matrix ◽  
Intermediate Size

A new method for determination of the orientation matrix of Laue X-ray data is presented. The method is based on matching of the experimental patterns of central reciprocal lattice rows projected on a unit sphere centered on the origin of the reciprocal lattice with the corresponding pattern of a monochromatic data set on the same material. This technique is applied to the complete data set and thus eliminates problems often encountered when single frames with a limited number of peaks are to be used for orientation matrix determination. Application of the method to a series of Laue data sets on organometallic crystals is described. The corresponding program is available under a Mozilla Public License-like open-source license.

A batch-wise non-linear fitting and analysis tool for treating large X-ray diffraction data sets

2006 ◽  
Vol 39 (2) ◽  
pp. 262-266 ◽  
Author(s):  
R. J. Davies
Keyword(s):  
Diffraction Data ◽  
Operation Mode ◽  
Large Data ◽  
Scattering Data ◽  
Data Sets ◽  
Analysis Tool ◽  
Data Set ◽  
X Ray ◽  
Linear Fitting ◽  
Non Linear

Synchrotron sources offer high-brilliance X-ray beams which are ideal for spatially and time-resolved studies. Large amounts of wide- and small-angle X-ray scattering data can now be generated rapidly, for example, during routine scanning experiments. Consequently, the analysis of the large data sets produced has become a complex and pressing issue. Even relatively simple analyses become difficult when a single data set can contain many thousands of individual diffraction patterns. This article reports on a new software application for the automated analysis of scattering intensity profiles. It is capable of batch-processing thousands of individual data files without user intervention. Diffraction data can be fitted using a combination of background functions and non-linear peak functions. To compliment the batch-wise operation mode, the software includes several specialist algorithms to ensure that the results obtained are reliable. These include peak-tracking, artefact removal, function elimination and spread-estimate fitting. Furthermore, as well as non-linear fitting, the software can calculate integrated intensities and selected orientation parameters.

A Ccomparison of sedigraph and pipette methods for soil particle-size analysis

Soil Research ◽  
1993 ◽  
Vol 31 (4) ◽  
pp. 407 ◽  
Author(s):  
GD Buchan ◽  
KS Grewal ◽  
JJ Claydon ◽  
RJ Mcpherson
Keyword(s):  
Particle Size ◽  
New Zealand ◽  
Particle Size Analysis ◽  
Size Analysis ◽  
Data Sets ◽  
Regression Equations ◽  
Total Iron Content ◽  
Data Set ◽  
X Ray ◽  
The Difference

The X-ray attenuation (Sedigraph) method for particle-size analysis is known to consistently estimate a finer size distribution than the pipette method. The objectives of this study were to compare the two methods, and to explore the reasons for their divergence. The methods are compared using two data sets from measurements made independently in two New Zealand laboratories, on two different sets of New Zealand soils, covering a range of textures and parent materials. The Sedigraph method gave systematically greater mass percentages at the four measurement diameters (20, 10, 5 and 2 �m). For one data set, the difference between clay (<2 �m) percentages from the two methods is shown to be positively correlated (R2 = 0.625) with total iron content of the sample, for all but one of the soils. This supports a novel hypothesis that the typically greater concentration of Fe (a strong X-ray absorber) in smaller size fractions is the major factor causing the difference. Regression equations are presented for converting the Sedigraph data to their pipette equivalents.

Charge Density of L-Alanyl-glycyl-L-alanine Based on X-Ray Data Collection Periods from 4 to 130 Hours

2007 ◽  
Vol 62 (5) ◽  
pp. 696-704 ◽  
Author(s):  
Diana Förster ◽  
Armin Wagner ◽  
Christian B. Hübschle ◽  
Carsten Paulmann ◽  
Peter Luger
Keyword(s):  
Synchrotron Radiation ◽  
Low Temperature ◽  
Charge Density ◽  
Data Sets ◽  
Data Set ◽  
X Ray ◽  
Atomic Properties ◽  
Multipole Refinement ◽  
Refinement Strategy ◽  
Experimental Charge Density

Abstract The charge density of the tripeptide L-alanyl-glycyl-L-alanine was determined from three X-ray data sets measured at different experimental setups and under different conditions. Two of the data sets were measured with synchrotron radiation (beamline F1 of Hasylab/DESY, Germany and beamline X10SA of SLS, Paul-Scherer-Institute, Switzerland) at temperatures around 100 K while a third data set was measured under home laboratory conditions (MoKα radiation) at a low temperature of 20 K. The multipole refinement strategy to derive the experimental charge density was the same in all cases, so that the obtained charge density properties could directly be compared. While the general analysis of the three data sets suggested a small preference for one of the synchrotron data sets (Hasylab F1), a comparison of topological and atomic properties gave in no case an indication for a preference of any of the three data sets. It follows that even the 4 h data set measured at the SLS performed equally well compared to the data sets of substantially longer exposure time.

scholarly journals Improved retrieval of nitrogen dioxide (NO<sub>2</sub>) column densities by means of MKIV Brewer spectrophotometers

2014 ◽  
Vol 7 (11) ◽  
pp. 4009-4022 ◽  
Author(s):  
H. Diémoz ◽  
A. M. Siani ◽  
A. Redondas ◽  
V. Savastiouk ◽  
C. T. McElroy ◽  
...  
Keyword(s):  
Nitrogen Dioxide ◽  
Ad Hoc ◽  
Absorption Spectrometry ◽  
Atmospheric Composition ◽  
Data Sets ◽  
Data Set ◽  
Noise Interference ◽  
Atmospheric Species ◽  
Mass Factor

Abstract. A new algorithm to retrieve nitrogen dioxide (NO2) column densities using MKIV ("Mark IV") Brewer spectrophotometers is described. The method includes several improvements, such as a more recent spectroscopic data set, the reduction of measurement noise, interference by other atmospheric species and instrumental settings, and a better determination of the zenith sky air mass factor. The technique was tested during an ad hoc calibration campaign at the high-altitude site of Izaña (Tenerife, Spain) and the results of the direct sun and zenith sky geometries were compared to those obtained by two reference instruments from the Network for the Detection of Atmospheric Composition Change (NDACC): a Fourier Transform Infrared Radiometer (FTIR) and an advanced visible spectrograph (RASAS-II) based on the differential optical absorption spectrometry (DOAS) technique. To determine the extraterrestrial constant, an easily implementable extension of the standard Langley technique for very clean sites without tropospheric NO2 was developed which takes into account the daytime linear drift of stratospheric nitrogen dioxide due to photochemistry. The measurement uncertainty was thoroughly determined by using a Monte Carlo technique. Poisson noise and wavelength misalignments were found to be the most influential contributors to the overall uncertainty, and possible solutions are proposed for future improvements. The new algorithm is backward-compatible, thus allowing for the reprocessing of historical data sets.

scholarly journals Tsallis Entropy for Assessing Spatial Uncertainty Associated with Mean Annual Runoff of Quaternary Catchments of the Middle Vaal Basin in South Africa

Entropy ◽  
2020 ◽  
Vol 22 (9) ◽  
pp. 1050
Author(s):  
Masengo Ilunga
Keyword(s):  
South Africa ◽  
Shannon Entropy ◽  
Annual Runoff ◽  
Spatial Uncertainty ◽  
Data Sets ◽  
Data Set ◽  
Information Index ◽  
Surface Water Resources ◽  
Convergence Point

This study assesses mainly the uncertainty of the mean annual runoff (MAR) for quaternary catchments (QCs) considered as metastable nonextensive systems (from Tsalllis entropy) in the Middle Vaal catchment. The study is applied to the surface water resources (WR) of the South Africa 1990 (WR90), 2005 (WR2005) and 2012 (WR2012) data sets. The q-information index (from the Tsalllis entropy) is used here as a deviation indicator for the spatial evolution of uncertainty for the different QCs, using the Shannon entropy as a baseline. It enables the determination of a (virtual) convergence point, zone of positive and negative uncertainty deviation, zone of null deviation and chaotic zone for each data set. Such a determination is not possible on the basis of the Shannon entropy alone as a measure for the MAR uncertainty of QCs, i.e., when they are viewed as extensive systems. Finally, the spatial distributions for the zones of the q-uncertainty deviation (gain or loss in information) of the MAR are derived and lead to iso q-uncertainty deviation maps.

NMR Spectroscopy of Tetra(propyn- 1-yl)silane in the Solid State and in Solution

2003 ◽  
Vol 58 (8) ◽  
pp. 809-812 ◽  
Author(s):  
Bernd Wrackmeyer ◽  
Oleg L. Tok ◽  
Amin Badshah
Keyword(s):  
Solid State ◽  
Bulk Material ◽  
Point Group ◽  
Coupling Constants ◽  
Data Set ◽  
Tin Compounds ◽  
X Ray ◽  
Nmr Data ◽  
Solid State Structures

The crystal structure of tetra(propyn-1-yl)silane, Si(C≡CMe)4 1, has revealed a completely asymmetric molecule (point group C1). Since this finding concerns a single crystal, the bulk material of 1 was studied by solid-state 29Si and 13C MAS NMR. This confirmed the result of the X-ray analysis, and by comparison with previous NMR measurements of the tin analogue 1(Sn) it is concluded that 1 and 1(Sn) must have very similar solid-state structures which are in contrast to those known for other tetra(alkyn-1-yl)silicon and -tin compounds. The NMR data set of 1 in solution was completed by determination of the magnitude of coupling constants 1J(13C,13C).

In Situ Diffraction Studies: Thermal Decomposition of a Natural Plumbojarosite and the Development of Rietveld-Based Data Analysis Techniques

2010 ◽  
Vol 651 ◽  
pp. 37-64 ◽  
Author(s):  
Ian C. Madsen ◽  
Ian E. Grey ◽  
Stuart J. Mills
Keyword(s):  
Thermal Decomposition ◽  
Amorphous Material ◽  
Data Sets ◽  
X Ray Diffraction ◽  
Data Set ◽  
X Ray ◽  
Analysis Techniques ◽  
Path Lengths ◽  
Instrument Configuration

A study of the thermal decomposition sequence of a sample of natural arsenian plumbojarosite has been undertaken using in situ X-ray diffraction. The sample was heated to 900°C using an Anton-Paar heating stage fitted to an INEL CPS120 diffractometer. The data were analysed using a whole-pattern, Rietveld based approach for the extraction of quantitative phase abundances. The instrument configuration used required the development and application of algorithms to correct for aberrations in the (i) peak intensities due to differing path lengths of incident and diffracted beams in the sample and (ii) peak positions due to sample displacement. Details of the structural models used were refined at selected steps in the pattern and then fixed for subsequent analysis. The data sequence consists of some 110 individual data sets which were analysed sequentially with the output of each run forming the input for analysis of the next data set. The results of the analysis show a complex breakdown and recrystallisation sequence including the formation of a major amount of amorphous material after initial breakdown of the plumbojarosite.

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