Soybean root rot caused by the oomycete
Phytophthora sojae
is a serious soil-borne disease threatening soybean production in China.
Bacillus velezensis
FZB42 is a model strain for Gram-positive plant growth-promoting rhizobacteria and is able to produce multiple antibiotics. In this study, we demonstrated that
B. velezensis
FZB42 can efficiently antagonize
P. sojae.
The underlying mechanism for the inhibition was then investigated. The FZB42 mutants deficient in the synthesis of lipopeptides (bacillomycin D and fengycin), known for antifungal activities, and polyketides (bacillaene, difficidin, and macrolactin), known for antibacterial activities, were not impaired in their antagonism toward
P. sojae
; in contrast, mutants deficient in bacilysin biosynthesis completely lost their antagonistic activities toward
P. sojae
, indicating that bacilysin was responsible for the activity. Isolated pure bacilysin confirmed this inference. Bacilysin was previously shown to be antagonistic mainly toward prokaryotic bacteria rather than eukaryotes. Here, we found that bacilysin could severely damage the hyphal structures of
P. sojae
and lead to the loss of their intracellular contents. A device was invented allowing interactions between
P. sojae
and
B. velezensis
FZB42 on nutrient agar. In this manner, the effect of FZB42 on
P. sojae
was studied by transcriptomics. FZB42 significantly inhibited the expression of
P. sojae
genes related to growth, macromolecule biosynthesis, pathogenicity, and ribosomes. Among them, the genes for pectate lyase were the most significantly downregulated. Additionally, we showed that bacilysin effectively prevents soybean sprouts from being infected by
P. sojae
and could antagonize diverse
Phytophthora
species, such as
P. palmivora
,
P. melonis
,
P. capsici
,
P. litchi
, and, most importantly,
P. infestans
.
Importance
Phytophthora
spp. are widespread eukaryotic phytopathogens and often extremely harmful.
Phytophthora
can infect many types of plants important to agriculture and forestry and thus cause large economic losses. Perhaps due to inappropriate recognition of
Phytophthora
as a common pathogen in history, research on the biological control of
Phytophthora
is limited. This study shows that
B. velezensis
FZB42 can antagonize various
Phytophthora
species and prevent the infection of soybean seedlings by
P. sojae
. The antibiotic produced by FZB42, bacilysin, which was previously known to have antibacterial effectiveness, is responsible for the inhibitory action against
Phytophthora
. We further showed that some
Phytophthora
genes and pathways may be targeted in future biocontrol studies. Therefore, our data provide a basis for the development of new tools for the prevention and control of root and stem rot in soybean and other plant diseases caused by
Phytophthora
.