Litylenchus coprosma gen. n., sp. n. (Tylenchida: Anguinata), from leaves of Coprosma repens (Rubiaceae) in New Zealand

Nematology ◽  
2011 ◽  
Vol 13 (1) ◽  
pp. 29-44 ◽  
Author(s):  
Kerrie Davies ◽  
Zeng Qi Zhao ◽  
Brett Alexander ◽  
Ian Riley
Keyword(s):  
New Zealand ◽  
New Genus ◽  
Large Subunit ◽  
Small Subunit ◽  
Rrna Genes ◽  
New Genus And Species ◽  
Pore Opening ◽  
Terminal Bulb ◽  
Stylet Length ◽  
Tail Tip

AbstractA new genus and species of anguinid nematode, Litylenchus coprosma gen. n., sp. n., was recovered from leaves of Coprosma repens A. Rich. from an amenity planting in Wellington, New Zealand. The genus is characterised by having slender males and slender or semi-obese females, pharynx with a weak non-muscular median bulb, a terminal bulb containing the pharyngeal glands, female with a single gonad having a quadricolumella and post-uterine sac; male with arcuate spicules and the bursa arising 1-2 anal body diam. anterior to the cloacal aperture and extending nearly to the tail tip, and does not induce galls, only foliar chlorosis. The species is characterised by having a short, robust stylet with conus forming ca 40% of stylet length and three well developed rounded knobs, secretory/excretory pore opening posterior to the nerve ring, terminal bulb abutting the intestine, and tail tip of variable form. Molecular phylogeny of near full length small subunit, D2/D3 expansion segments of the large subunit and internal transcribed spacer rRNA genes support the description of L. coprosma gen. n., sp. n. as a new genus and species.

Zeatylenchus pittosporum gen. n., sp. n. (Tylenchida: Anguinata), from leaves of Pittosporum tenuifolium (Pittosporaceae) in New Zealand

Nematology ◽  
2013 ◽  
Vol 15 (2) ◽  
pp. 197-212
Author(s):  
Zeng Qi Zhao ◽  
Kerrie A. Davies ◽  
Brett J.R. Alexander ◽  
Ian T. Riley
Keyword(s):  
New Zealand ◽  
New Genus ◽  
Large Subunit ◽  
Small Subunit ◽  
Rrna Genes ◽  
New Genus And Species ◽  
Pore Opening ◽  
Males And Females ◽  
Stylet Length ◽  
Tail Tip

A new genus and species of anguinid nematode, Zeatylenchus pittosporum gen. n., sp. n., was recovered from leaves of Pittosporum tenuifolium from Hahei, Coromandel Region, North Island, New Zealand. The genus is characterised by having slender males and females, excretory pore opening near the lips and level with the knobs of the retracted stylet, pharynx with a weak non-muscular median bulb, pharyngeal glands overlapping the intestine, females with a single gonad with a quadricolumella and post-uterine sac; and males with slender arcuate spicules and the bursa arising <1 anal body diam. anterior to the cloacal aperture and extending ca 30% of distance to the tail tip. Its feeding does not induce galls, only foliar chlorosis. The species has particular characters, including a short, robust stylet with conus forming ca 40% of stylet length and small rounded compact knobs, and tail offset dorsally with a pointed tip. Molecular phylogeny of near full length small subunit, D2/D3 expansion segments of the large subunit and internal transcribed spacer rRNA genes support the description of Zeatylenchus pittosporum gen. n., sp. n. as a new genus and species.

Schistonchus zealandicus n. sp. (Nematoda: Aphelenchoididae) associated with Ficus macrophylla in New Zealand

Nematology ◽  
2015 ◽  
Vol 17 (1) ◽  
pp. 53-66 ◽  
Author(s):  
Zengqi Zhao ◽  
Dongmei Li ◽  
Kerrie A. Davies ◽  
Weimin Ye
Keyword(s):  
New Zealand ◽  
Large Subunit ◽  
Tail Length ◽  
Small Subunit ◽  
Rrna Genes ◽  
Lateral Field ◽  
Male Tail ◽  
Tail Tip ◽  
Large Subunit Rrna ◽  
A New Species

Schistonchus zealandicus n. sp. was recovered from the sycones of Ficus macrophylla from St Helier’s Bay, Mt Wellington, and St Johns, suburbs of Auckland, New Zealand. It is characterised by having the opening of the excretory pore located just posterior to the anterior end of the nematode but anterior to the conus level of the stylet, a short post-vulval uterine sac (10-18 μm or 0.4-0.7 vulval body diam. long), presence of two incisures in the lateral field with many broken, non-defined lines between them, rose-thorn-shaped spicule, three pairs of subventral papillae on the male tail (one pair adcloacal on the anterior lip, one pair slightly posterior to mid-tail length, and one pair close to tail tip), a distinctive mucron on the male tail, apparent biogeographical range, and its association with F. macrophylla. The absence of a lip sector disc suggests that it is close to S. altermacrophylla, S. aureus and S. laevigatus. Molecular phylogeny of near full length small subunit and D2-D3 expansion segments of the large subunit rRNA genes supports the proposal of S. zealandicus n. sp. as a new species.

scholarly journals New Zealand species of the genus Tripyla Bastian, 1865 (Nematoda:Triplonchida: Tripylidae). I : A new species, a new record and key to long-tailed species

Zootaxa ◽  
2021 ◽  
Vol 2291 (1) ◽  
Author(s):  
ZENG QI ZHAO
Keyword(s):  
New Zealand ◽  
Large Subunit ◽  
Small Subunit ◽  
Rrna Genes ◽  
Long Tail ◽  
Using Data ◽  
De Man ◽  
First Time ◽  
Short Body ◽  
A New Species

This paper describes two species of the genus of Tripyla from New Zealand and also provides a key to species based on the morphology of females in eight long-tailed (c < 5) species in the genus of Tripyla. Tripyla bioblitz sp. nov. is characterized by its more anterior vulva position (V = 43.7–45.4%), relatively short body length (1150–1410 μm) and long tail (c = 4.0–4.4) in the group. Tripyla filicaudata de Man, 1880 is recorded for the first time from New Zealand and from the Southern Hemisphere. In addition, the phylogenetic relationships among species were analyzed using data from the near full length small subunit (SSU) and D2/D3 expansion segments of the large subunit ribosomal (LSU) rRNA genes, and these analyses revealed that T. bioblitz sp. nov. is close to but distinct from T. filicaudata de Man, 1880.

Latronema whataitai sp. n. (Nematoda: Selachinematidae) from intertidal sediments of New Zealand, with notes on relationships within the family based on preliminary 18S and D2-D3 phylogenetic analyses

Nematology ◽  
2015 ◽  
Vol 17 (8) ◽  
pp. 941-952 ◽  
Author(s):  
Daniel Leduc ◽  
Zeng Zhao
Keyword(s):  
New Zealand ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Rrna Genes ◽  
Intertidal Sediments ◽  
Molecular Sequences ◽  
Close Relationship ◽  
Central Tooth ◽  
Family Based

Latronema whataitai sp. n. is described from intertidal sediments of Hataitai Beach, North Island of New Zealand, and its placement within the Selachinematidae investigated using 18S and D2-D3 molecular sequences. Latronema whataitai sp. n. is characterised by relatively slender body (a = 22-25), outer labial setae and cephalic setae of similar length, anterior buccal cavity with three sets of seven teeth with larger central tooth positioned above the other six, circular amphid with faint outline, males with 12-13 precloacal supplements and spicules with pointed projection near distal end, and tail 2.0-2.6 anal body diam. long. The cuticle ultrastructure of the genus is investigated for the first time using scanning electron microscopy. Molecular phylogenies of near full length small subunit and D2-D3 expansion segments of the large subunit rRNA genes do not provide support for the division of Selachinematidae into the subfamilies Selachinematinae and Choniolaiminae, and do not support a close relationship between Latronema and Richtersia despite some morphological similarities. These preliminary results are based on a small number of molecular sequences, and therefore the current morphology-based classification remains the most tractable system for the Selachinematidae until more comprehensive analyses are conducted.

scholarly journals Ochraceocephala foeniculi gen. et sp. nov., a new pathogen causing crown rot of fennel in Italy

MycoKeys ◽  
2020 ◽  
Vol 66 ◽  
pp. 1-22
Author(s):  
Dalia Aiello ◽  
Alessandro Vitale ◽  
Giancarlo Polizzi ◽  
Hermann Voglmayr
Keyword(s):  
New Genus ◽  
Southern Italy ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Management Strategies ◽  
Small Subunit ◽  
Ssu Rdna ◽  
Crown Rot ◽  
New Genus And Species ◽  
Pathogenicity Tests

A new disease of fennel is described from Sicily (southern Italy). Surveys of the disease and sampling were conducted during spring 2017 and 2018 in Adrano and Bronte municipalities (Catania province) where this crop is widely cultivated. Isolations from the margin of symptomatic tissues resulted in fungal colonies with the same morphology. Pathogenicity tests with one isolate of the fungus on 6-month-old plants of fennel reproduced similar symptoms to those observed in nature. Inoculation experiments to assess the susceptibility of six different fennel cultivars to infection by the pathogen showed that the cultivars ‘Narciso’, ‘Apollo’, and ‘Pompeo’ were more susceptible than ‘Aurelio’, ‘Archimede’, and ‘Pegaso’. Phylogenetic analyses based on a matrix of the internal transcribed spacer (ITS), the large subunit (LSU), and the small subunit (SSU) rDNA regions revealed that the isolates represent a new genus and species within the Leptosphaeriaceae, which is here described as Ochraceocephala foeniculi gen. et sp. nov. This study improves the understanding of this new fennel disease, but further studies are needed for planning effective disease management strategies. According to the results of the phylogenetic analyses, Subplenodomus iridicola is transferred to the genus Alloleptosphaeria and Acicuseptoria rumicis to Paraleptosphaeria.

Theileria parva ribosomal internal transcribed spacer sequences exhibit extensive polymorphism and mosaic evolution: application to the characterization of parasites from cattle and buffalo

Parasitology ◽  
1999 ◽  
Vol 118 (6) ◽  
pp. 541-551 ◽  
Author(s):  
N. E. COLLINS ◽  
B. A. ALLSOPP
Keyword(s):  
Genetic Recombination ◽  
Large Subunit ◽  
Small Subunit ◽  
Internal Transcribed Spacers ◽  
Rrna Genes ◽  
Gene Pools ◽  
Theileria Parva ◽  
Causative Agents ◽  
Internal Transcribed Spacer Sequences

We sequenced the rRNA genes and internal transcribed spacers (ITS) of several Theileria parva isolates in an attempt to distinguish between the causative agents of East coast fever and Corridor disease. The small subunit (SSU) and large subunit (LSU) rRNA genes from a cloned T. p. lawrencei parasite were sequenced; the former was identical to that of T. p. parva Muguga, and there were minor heterogeneities in the latter. The 5·8S gene sequences of 11 T. parva isolates were identical, but major differences were found in the ITS. Six characterization oligonucleotides were designed to hybridize within the variable ITS1 region; 93·5% of T. p. parva isolates examined were detected by probe TPP1 and 81·8% of T. p. lawrencei isolates were detected by TPL2 and/or TPL3a. There was no absolute distinction between T. p. parva and T. p. lawrencei and the former hybridized with fewer of the probes than did the latter. It therefore seems that a relatively homogenous subpopulation of T. parva has been selected in cattle from a more diverse gene pool in buffalo. The ITSs of both T. p. parva and T. p. lawrencei contained different combinations of identifiable sequence segments, resulting in a mosaic of segments in any one isolate, suggesting that the two populations undergo genetic recombination and that their gene pools are not completely separate.

Morphological and molecular characteristics of Bastiania sinensis sp. n., Tripyla aquatica Brzeski & Winiszewska-Ślipińska, 1993 and T. setifera Bütschli, 1873 (Nematoda: Triplonchida) from Shanxi Province, North China

Nematology ◽  
2021 ◽  
pp. 1-23
Author(s):  
Mei Na Liu ◽  
Yu Mei Xu ◽  
Zeng Qi Zhao ◽  
Jian Ming Wang
Keyword(s):  
North China ◽  
Large Subunit ◽  
Small Subunit ◽  
Rrna Genes ◽  
Shanxi Province ◽  
Molecular Characteristics ◽  
Separate Species ◽  
Using Data ◽  
First Time ◽  
Respective Species

Summary This paper describes a new species of Bastiania, presents a new record and redescribes a known species of Tripyla. These nematodes are all in the order Triplonchida and were collected from Shanxi Province, North China. Bastiania sinensis sp. n. is characterised by having the female with a relatively slender body 1049-1295 μm long, dorsally arcuate after heat relaxation, with outer labial setae and cephalic setae in a single circle, an oval amphid, 7-8 laterodorsal cervical setae scattered in the pharyngeal region, orthometamenes and pseudocoelomocytes present, tail conoid with a mucron 1-2 μm long, two pairs of caudal setae present, a = 58.1-75.5, b = 4.0-4.6, c = 12.7-19.7, c′ = 4.1-7.8 and V = 61.1-67.7. Males were not found. Tripyla aquatica is recorded for the first time from China, and is redescribed. Tripyla setifera has been reported from China but without a detailed description – now provided. In addition, phylogenetic relationships among the species were analysed using data from the near full length small subunit (SSU) and D2-D3 segments of large subunit (LSU) of rRNA genes. Bastiania sinensis sp. n. is monophyletic with the Bastiania sequences available in GenBank, but is on an independent branch supporting its status as a separate species; T. aquatica and T. setifera are monophyletically clustered with known Tripyla species and grouped together with sequences from their respective species.

scholarly journals A new genus and species of eomysticetid (Cetacea: Mysticeti) and a reinterpretation of ‘Mauicetus’ lophocephalus Marples, 1956: transitional baleen whales from the upper Oligocene of New Zealand

2018 ◽  
Author(s):  
Robert Boessenecker ◽  
R. Ewan Fordyce
Keyword(s):  
Phylogenetic Analysis ◽  
New Zealand ◽  
Temporomandibular Joint ◽  
New Genus ◽  
Feeding Strategy ◽  
Thoracic Vertebrae ◽  
New Genus And Species ◽  
Baleen Whales ◽  
Upper Oligocene ◽  
Lunge Feeding

The early evolution of toothless baleen whales (Chaeomysticeti) remains elusive despite a robust record of Eocene-Oligocene archaeocetes and toothed mysticetes. Eomysticetids, a group of archaic longirostrine and putatively toothless baleen whales fill in a crucial morphological gap between well-known toothed mysticetes and more crownward Neogene Mysticeti. A historically important but perplexing cetacean is “Mauicetus” lophocephalus (upper Oligocene South Island, New Zealand). The discovery of new skulls and skeletons of eomysticetids from the Oligocene Kokoamu Greensand and Otekaike Limestone permit a redescription and modern reinterpretation of “Mauicetus” lophocephalus, and indicating that this species may have retained adult teeth. A new genus and species, Tokarahia kauaeroa, is erected on the basis of a well-preserved subadult to adult skull with mandibles, tympanoperiotics, and cervical and thoracic vertebrae, ribs, sternum, and forelimbs from the Otekaike Limestone (&gt;25.2 Ma). “Mauicetus” lophocephalus is relatively similar and recombined as Tokarahia lophocephalus. Phylogenetic analysis supports inclusion of Tokarahia within the Eomysticetidae alongside Eomysticetus, Micromysticetus, Yamatocetus, and Tohoraata, and strongly supports monophyly of Eomysticetidae. Tokarahia lacked extreme rostral kinesis of extant Mysticeti and primitively retained a delicate archaeocete-like posterior mandible and synovial temporomandibular joint, suggesting that Tokarahia was capable of at most, limited lunge feeding in contrast to extant Balaenopteridae, and utilized an alternative as-yet unspecified feeding strategy.

scholarly journals Microbial Composition of Near-Boiling Silica-Depositing Thermal Springs throughout Yellowstone National Park

2002 ◽  
Vol 68 (10) ◽  
pp. 5123-5135 ◽  
Author(s):  
Carrine E. Blank ◽  
Sherry L. Cady ◽  
Norman R. Pace
Keyword(s):  
Yellowstone National Park ◽  
National Park ◽  
Hydrogen Oxidation ◽  
Large Subunit ◽  
Microbial Community Composition ◽  
Pcr Amplification ◽  
Small Subunit ◽  
Rrna Genes ◽  
Small Subunit Rrna ◽  
Microbial Composition

ABSTRACT The extent of hyperthermophilic microbial diversity associated with siliceous sinter (geyserite) was characterized in seven near-boiling silica-depositing springs throughout Yellowstone National Park using environmental PCR amplification of small-subunit rRNA genes (SSU rDNA), large-subunit rDNA, and the internal transcribed spacer (ITS). We found that Thermocrinis ruber, a member of the order Aquificales, is ubiquitous, an indication that primary production in these springs is driven by hydrogen oxidation. Several other lineages with no known close relatives were identified that branch among the hyperthermophilic bacteria. Although they all branch deep in the bacterial tree, the precise phylogenetic placement of many of these lineages is unresolved at this time. While some springs contained a fair amount of phylogenetic diversity, others did not. Within the same spring, communities in the subaqueous environment were not appreciably different than those in the splash zone at the edge of the pool, although a greater number of phylotypes was found along the pool's edge. Also, microbial community composition appeared to have little correlation with the type of sinter morphology. The number of cell morphotypes identified by fluorescence in situ hybridization and scanning electron microscopy was greater than the number of phylotypes in SSU clone libraries. Despite little variation in Thermocrinis ruber SSU sequences, abundant variation was found in the hypervariable ITS region. The distribution of ITS sequence types appeared to be correlated with distinct morphotypes of Thermocrinis ruber in different pools. Therefore, species- or subspecies-level divergences are present but not detectable in highly conserved SSU sequences.

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