Desmonostoc danxiaense sp. nov. (Nostocales, Cyanobacteria) from Danxia mountain in China based on polyphasic approach

Phytotaxa ◽  
2018 ◽  
Vol 367 (3) ◽  
pp. 233 ◽  
Author(s):  
FANGFANG CAI ◽  
YIMING YANG ◽  
QIANZHI WEN ◽  
RENHUI LI

The recently established genus Desmonostoc was characterized by forming macroscopic colonies with diffluent mucilaginous envelopes embedding long vegetative filaments and possessing long chains of akinetes. The establishment of this new genus was further supported by the clustering of the 16S rRNA gene, which have a distinctive phylogenetic placement outside of Nostoc. In this study, a new cyanobacterial species was isolated from a wet rocky wall in Danxia mountain, Guangdong province, southern China, and the novel strains of this new species were evaluated by combining morphological characteristic and molecular data on the 16S rRNA gene and 16S-23S internally transcribed spacer (ITS). This new taxon was found to be closest to Desmonostoc species. The separation of the new species described here as Desmonostoc danxiaense, using morphological and molecular traits, was based on differences in phenotypic, 16S rRNA gene, ITS sequence and its secondary structure.

2005 ◽  
Vol 147 (2) ◽  
pp. 411-420 ◽  
Author(s):  
S. Schiaparelli ◽  
M. Barucca ◽  
E. Olmo ◽  
M. Boyer ◽  
A. Canapa

2003 ◽  
Vol 142 (6) ◽  
pp. 1125-1130 ◽  
Author(s):  
A. Canapa ◽  
S. Schiaparelli ◽  
I. Marota ◽  
M. Barucca

Plant Disease ◽  
2010 ◽  
Vol 94 (4) ◽  
pp. 481-481 ◽  
Author(s):  
R. D. French-Monar ◽  
A. F. Patton ◽  
J. M. Douglas ◽  
J. A. Abad ◽  
G. Schuster ◽  
...  

In August 2008, 30% of tomato (Solanum lycopersicum) plants in plots in Lubbock County, Texas showed yellowing, lateral stem dieback, upward leaf curling, enlargement of stems, adventitious roots, and swollen nodes. Yellowing in leaves was similar to that seen with zebra chip disease (ZC) of potato that was confirmed in a potato field 112 km away in July 2008 and was associated with a ‘Candidatus Liberibacter’ species (1), similar to findings earlier in 2008 in New Zealand and California (2,3). Tissue from four symptomatic plants of cv. Spitfire and two of cv. Celebrity were collected and DNA was extracted from midribs and petioles with a FastDNA Spin Kit (Qbiogene, Inc., Carlsbad, CA,). PCR amplification was done with 16S rRNA gene primers OA2 and OI2c, which are specific for “Ca. Liberibacter solanacearum” from potato and tomato and amplify a 1.1-kb fragment of the 16S rRNA gene of this new species (1,3). Amplicons of 1.1 kb were obtained from all samples and these were sequenced in both orientations (McLab, San Francisco, CA). Sequences of the 16S rRNA gene were identical for both Spitfire and Celebrity and were submitted to the NCBI as GenBank Accession Nos. FJ939136 and FJ939137, respectively. On the basis of a BLAST search, sequence alignments revealed 99.9% identity with a new species of ‘Ca. Liberibacter’ from potato (EU884128 and EU884129) in Texas (1); 99.7% identity with the new species “Ca. Liberibacter solanacearum” described from potato and tomato (3) in New Zealand (EU849020 and EU834130, respectively) and from the potato psyllid Bactericera cockerelli in California (2) (EU812559, EU812556); 97% identity with ‘Ca L. asiaticus’ from citrus in Malaysia (EU224393) and 94% identity with both ‘Ca. L. africanus’ and ‘Ca. L. americanus’ from citrus (EU921620 and AY742824, respectively). A neighbor-joining cladogram constructed using the 16S rRNA gene fragments delineated four clusters corresponding to each species, and these sequences clustered with “Ca. L. solanacearum”. A second PCR analysis was conducted with the CL514F/CL514R primer pair, which amplifies a sequence from the rplJ and rplL ribosomal protein genes of “Ca. L. solanacearum”. The resulting 669-bp products were 100% identical to a sequence reported from tomato in Mexico (FJ498807). This sequence was submitted to NCBI (GU169328). ZC, a disease causing losses to the potato industry, is associated with a ‘Candidatus Liberibacter’ species (1–3) and was reported in Central America and Mexico in the 1990s, in Texas in 2000, and more recently in other states in the United States (4). In 2008, a “Ca. Liberibacter solanacearum” was detected on Capsicum annuum, S. betaceum, and Physalis peruviana in New Zealand (3). Several studies have shown that the potato psyllid, B. cockerelli, is a potential vector for this pathogen (2,4). To our knowledge, this is the first report of “Ca. Liberibacter solanacearum” in field tomatoes showing ZC-like foliar disease symptoms in the United States. References: (1). J. A. Abad et al. Plant Dis. 93:108, 2009 (2) A. K. Hansen et al. Appl. Environ. Microbiol. 74:5862, 2008. (3) L. W. Liefting et al. Plant Dis. 93:208, 2009. (4) G. A. Secor et al. Plant Dis. 93:574, 2009.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9194
Author(s):  
Song-Bo Wang ◽  
Ya-Nan Zhang ◽  
Jie-Xin Zou

A new species of freshwater crab of the genus Qianguimon Huang, 2018, is described from Guangxi Zhuang Autonomous Region, southern China. It can be distinguished from congeners by the following characters: male first gonopods bent inward at about 45° at base of terminal segment, carapace regions distinct and rugged and the female vulva opening inwards and downwards. In addition, molecular evidence derived from the 16S rRNA gene supported the species described in this study as a new species of Qianguimon.


2021 ◽  
Author(s):  
Vladislav S. Aleev ◽  
◽  
Elena G. Plotnikova ◽  

5 strains of halophilic bacteria were isolated from clay deposits of brine-diverting workings and brine tanks of the mine of the Verkhnekamskoye salt deposit (Solikamsk, Perm Territory). Because of phylogenetic analysis based on a comparison of the 16S rRNA gene sequences, it was found that the isolated cultures are members of the Salinisphaeraceae family. Three halophilic strains SHV2, RV14, and SWV1 had a similarity with the closest type strain of the Salinisphaera hydrothermalis species at the level of 95.94-96.62% (16S rRNA gene), which indicates that these strains belong to a new taxon. All isolated bacteria are halophiles: they grow at high salinity (up to 270-300 g / l NaCl).


Author(s):  
A. A. Pyankova ◽  
◽  
D. I. Usanina ◽  
V. S. Aleev ◽  
S. M. Blinov ◽  
...  

29 strains of halophilic/halotolerant bacteria were isolated from clay deposits of brine-diverting workings and brine pits of the mine of the Verkhnekamsky salt deposit (Perm krai). As a result of phylogenetic analysis based on a comparison of the 16S rRNA gene sequences, it was found that the isolated cultures are representatives of the classes Gammaproteobacteria (Halomonadaceae and Salinisphaeraceae fami-lies) and Bacilli (family Bacillaceae). Three halophilic strains SHV2, RV14, and SWV1 were similar to the closest type strain of the Salinisphaera hydrothermalis species at the level of 95.94-96.62% (16S rRNA gene), which indicates that these strains belong to a new taxon. Most of the isolated bacteria of the families Halomonadaceae and Bacillaceae are extremophiles: they grow at pH 9-10 and high sa-linity (up to 250-270 g/L NaCl). Two halophilic strains of the genus Halomonas have been found to de-grade salicylic and benzoic acids (decomposition products of polyaromatic compounds), which makes them promising for use in biotechnologies for the restoration of contaminated areas with a high level of mineralization.


ZooKeys ◽  
2020 ◽  
Vol 951 ◽  
pp. 133-157
Author(s):  
Walter Cocca ◽  
Franco Andreone ◽  
Francesco Belluardo ◽  
Gonçalo M. Rosa ◽  
Jasmin E. Randrianirina ◽  
...  

The genus Gephyromantis belongs to the species-rich family Mantellidae and is currently divided in six subgenera. Among these is the subgenus Phylacomantis, which currently includes four described species: Gephyromantis pseudoasper, G. corvus, G. azzurrae, and G. atsingy. The latter three species are distributed in western Madagascar, and two of them (G. azzurrae and G. corvus) occur in the Isalo Massif. Based on the analysis of molecular data (a fragment of the 16S rRNA gene), morphological inspection of museum specimens, and photographic comparisons, G. azzurrae is synonymised with G. corvus and the second Phylacomantis lineage of Isalo is described as G. kintanasp. nov. This medium-sized frog species (adult snout-vent length 35–44 mm) is assigned to this subgenus according to genetic and morphological similarities to the other known species of Phylacomantis. Gephyromantis kintanasp. nov. is known only from the Isalo Massif, while new records for G. corvus extend its range to ca. 200 km off its currently known distribution. These two taxa seem to occur in syntopy in at least one locality in Isalo, and the easiest way to distinguish them is the inspection of the ventral colouration, dark in G. corvus and dirty white in G. kintana.


2005 ◽  
Vol 55 (1) ◽  
pp. 263-270 ◽  
Author(s):  
Soon-Wo Kwon ◽  
Jin-Young Park ◽  
Jong-Shik Kim ◽  
Jun-Won Kang ◽  
Yang-Hee Cho ◽  
...  

A total of 128 strains was isolated from more than 23 legume hosts in Korea. Phylogenetic relationships between these Korean isolates and reference strains of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium were analysed using their 16S rRNA gene and internally transcribed spacer (ITS) region sequences. Among the Bradyrhizobium strains, dendrograms based on both the 16S rRNA gene and ITS region sequences produced two main groups. The ITS tree yielded at least two new clusters that were discernable from the seven previously delineated genospecies. Large discrepancies were revealed between phylogenetic dendrograms based on 16S rRNA gene and ITS region sequences for members of the genus Rhizobium, reflecting their taxonomic heterogeneity. The amalgamation of Rhizobium and former members of Agrobacterium was confirmed using the 16S rRNA tree. Phylogenetic analysis of ITS region sequences showed that the Rhizobium giardinii clade (group II) and the Rhizobium radiobacter/Rhizobium rubi clade (group III) could be tentatively recognized as groups that are separable from the core group (group I), which includes Rhizobium leguminosarum. Dendrograms based on the 16S rRNA gene and ITS region sequences of Mesorhizobium strains were highly conflicting due to the poor taxonomic resolution of the 16S rRNA gene sequences and the low confidence in the ITS dendrogram. Several Korean isolates within the genus Mesorhizobium are thought to represent novel taxa when considering their relatively low ITS region sequence similarities (<80 %) to the reference strains.


2015 ◽  
Vol 27 (5) ◽  
pp. 439-454 ◽  
Author(s):  
Phil M. Novis ◽  
Jackie Aislabie ◽  
Susan Turner ◽  
Malcolm McLeod

AbstractWright Valley, Victoria Land contains numerous aquatic habitats suitable for the growth of algae in summer. Excepting diatoms and lichen phycobionts, algal diversity and distribution in the valley was documented. Using cultures and environmental cloning eight cyanobacterial and 14 eukaryotic species were revealed. The cyanobacterium Microcoleus vaginatus and the chlorophycean Chlorococcum sp. 1 were the most common, both occurring in more than one habitat (ponds, soils or streams). Ponds harboured the most diverse communities. Habitat specialization was rare. Chlamydomonads were not found outside ponds, but species capable of zoospore production were able to colonize ponds and soils. Nostocalean cyanobacteria were not detected. Results suggest dispersal within and between valleys, with little evidence of Antarctic endemism. All but one cyanobacterium with similar internally transcribed spacer (ITS) length to clones from Miers Valley proved to be different species when 16S rRNA gene sequences were also considered; thus, ITS length is unreliable for assessing identity and biogeography of these cyanobacteria. Comparison with a 454 16S rRNA gene soil dataset from Wright Valley indicated the occurrence of only one of the cyanobacterial species, the distribution of which may be limited by salinity.


2010 ◽  
Vol 60 (10) ◽  
pp. 2446-2450 ◽  
Author(s):  
A. I. Vela ◽  
C. Sánchez-Porro ◽  
V. Aragón ◽  
A. Olvera ◽  
L. Domínguez ◽  
...  

Nine Gram-negative, catalase- and oxidase-positive, coccus-shaped bacteria were isolated from pigs affected by different pathological processes. Phenotypic and genotypic methods were adopted to determine the relationships of these new isolates to recognized species of the genus Moraxella. Analysis of the 16S rRNA gene sequences demonstrated that the clinical isolates represented a new lineage within the genus Moraxella. The isolates were closely related to Moraxella cuniculi and Moraxella pluranimalium with 16S rRNA gene sequence similarities of 98.1 % and 99.1 %, respectively. The isolates displayed DNA–DNA relative binding ratios of 74 % to each other, but distinctly lower levels of DNA–DNA hybridization were observed with phylogenetically closely related moraxellae (<32 %). The new isolates could be distinguished from all other recognized species of the genus Moraxella by physiological and biochemical tests. On the basis of the phenotypic and molecular data, the nine new isolates from pigs represent a novel species within the genus Moraxella, for which the name Moraxella porci sp. nov. is proposed. The type strain is SN9-4MT (=CECT 7294T=CCUG 54912T).


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