Morphology and phylogenetic position of three new raphid diatoms (Bacillariophyceae) from Hangang River, South Korea

Phytotaxa ◽  
2020 ◽  
Vol 442 (3) ◽  
pp. 153-182
Author(s):  
LING TAN ◽  
PENGBIN WANG ◽  
IN-HWAN CHO ◽  
EUN-A HWANG ◽  
HYUK LEE ◽  
...  
Keyword(s):  
New Species ◽  
South Korea ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Molecular Characteristics ◽  
Rbcl Gene ◽  
Ssu Rrna ◽  
Bisphosphate Carboxylase

Epilithic diatoms were isolated and cultured during ecological investigations of the Hangang River, South Korea. Three species belonging to the genera Fragilaria, Nitzschia, and Encyonema were investigated using morphological and molecular data. Their morphological characteristics were analyzed using light microscopy (LM) and scanning electron microscopy (SEM). The nuclear small subunit (SSU) rRNA and ribulose-1, 5-bisphosphate carboxylase/oxygenase (rbcL) genes were used to study the molecular characteristics of these taxa. We herein describe three new species: 1) Fragilaria thornata, which has spatulate spines tapering towards their tips; 2) Nitzschia hantanense, which has a small-sized frustule with convex margins and parallel striae in the central part of the valve that become strongly radial towards the poles; 3) Encyonema equalis, which has a space between projections, located on the upper siliceous struts, that is consistent whether near the margin or near the raphe. According to the molecular analysis of three species, there also give a strong evidence to separate these three species as new species based on the phylogenetic tree and genetic distance of SSU rRNA and rbcL gene. The result of all analyses support that Fragilaria thornata, Nitzschia hantanense and Encyonema equalis are new to science.

scholarly journals Four new species in the Tremella fibulifera complex (Tremellales, Basidiomycota)

MycoKeys ◽  
2021 ◽  
Vol 82 ◽  
pp. 33-56
Author(s):  
Long-Fei Fan ◽  
Renato Lúcio Mendes Alvarenga ◽  
Tatiana Baptista Gibertoni ◽  
Fang Wu ◽  
Yu-Cheng Dai
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Small Subunit ◽  
Molecular Evidence ◽  
Rrna Gene

Samples of species close to Tremella fibulifera from China and Brazil are studied, and T. fibulifera is confirmed as a species complex including nine species. Five known species (T. cheejenii, T. fibulifera s.s., T. “neofibulifera”, T. lloydiae-candidae and T. olens) and four new species (T. australe, T. guangxiensis, T. latispora and T. subfibulifera) in the complex are recognized based on morphological characteristics, molecular evidence, and geographic distribution. Sequences of eight species of the complex were included in the phylogenetic analyses because T. olens lacks molecular data. The phylogenetic analyses were performed by a combined sequence dataset of the internal transcribed spacer (ITS) and the partial nuclear large subunit rDNA (nLSU), and a combined sequence dataset of the ITS, partial nLSU, the small subunit mitochondrial rRNA gene (mtSSU), the translation elongation factor 1-α (TEF1), the largest and second largest subunits of RNA polymerase II (RPB1 and RPB2). The eight species formed eight independent lineages with robust support in phylogenies based on both datasets. Illustrated description of the six species including Tremella fibulifera s.s., T. “neofibulifera” and four new species, and discussions with their related species, are provided. A table of the comparison of the important characteristics of nine species in the T. fibulifera complex and a key to the whitish species in Tremella s.s. are provided.

scholarly journals Multi-Gene Phylogeny and Taxonomy of Hydnellum (Bankeraceae, Basidiomycota) from China

2021 ◽  
Vol 7 (10) ◽  
pp. 818
Author(s):  
Yan-Hong Mu ◽  
Jia-Rui Yu ◽  
Ting Cao ◽  
Xiang-Hua Wang ◽  
Hai-Sheng Yuan
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Ribosomal Rna Gene ◽  
Morphological Studies

The genus Hydnellum is an important group of stipitate hydnaceous fungi which can form ectomycorrhiza with many species of woody plants. In recent decades, the frequency and number of basidiocarps observed in China have been declining significantly. So far, however, we know little about the species diversity of Hydnellum in China. In this study, we conducted molecular phylogenetic analyses based on sections of multiple loci, including the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the small subunit of nuclear ribosomal RNA gene (SSU) and the second-largest subunit of RNA polymerase II gene (RPB2), as well as morphological studies, of collected samples of Hydnellum from China. We also inferred Maximum Likelihood and Bayesian phylogenies for the order Thelephorales from the dataset of the combined nLSU and ITS. This study has revealed the phylogenetic position of Hydnellum in the order Thelephorales, and phylogenetically confirmed ten major clades in Thelephorales; Twenty-nine taxa are proposed, described or reported, including 10 new subgenera (Hydnellum subgenus Hydnellum, subg. Caesispinosum, subg. Croceum, subg. Inflatum, subg. Rhizomorphum, subg. Scabrosum, subg. Spongiosum, subg. Subindufibulatum, subg. Violaceum and subg. Zonatum), 11 new species (Hydnellum atrorubrum, H. atrospinosum, H. bomiense, H. brunneorubrum, H. fibulatum, H. granulosum, H. inflatum, H. rubidofuscum, H. squamulosum, H. sulcatum and H. yunnanense), 3 newly recorded species (H. caeruleum, H. peckii and H. spongiosipes) and 5 notable specimens (Hydnellum sp 1, H. sp 2, H. sp 3, H. sp 4 and H. sp 5). A classification system based on the morphological characteristics (especially the hyphal structure types) and molecular analyses is proposed to accommodate most species in Hydnellum. The distinguishing characters of the subgenera and the new species with their closely related taxa are discussed. A key to the species of Hydnellum from China is provided.

scholarly journals Two New Benthic Diatoms of the Genus Achnanthidium (Bacillariophyceae) from the Hangang River, Korea

Diversity ◽  
2020 ◽  
Vol 12 (7) ◽  
pp. 285
Author(s):  
Minzi Miao ◽  
Zhun Li ◽  
Eun-A Hwang ◽  
Ha-Kyung Kim ◽  
Hyuk Lee ◽  
...  
Keyword(s):  
New Species ◽  
Central Area ◽  
Small Subunit ◽  
Molecular Characteristics ◽  
Rbcl Gene ◽  
Freshwater Species ◽  
Sequence Analyses ◽  
Morphological Comparison ◽  
Molecular Analyses ◽  
Rbcl Gene Sequences

Two new benthic freshwater species belonging to the genus Achnanthidium were found in Korea. Achnanthidium ovale sp. nov. and A. cavitatum sp. nov. are described as new species based on light and scanning electron microscopy observations and molecular analyses. Both species are compared with the type material of morphologically similar taxa. Achnanthidium ovale differs from other species belonging to the A. pyrenaicum complex in outline, striation pattern, raphe central endings, and freestanding areolae at the apices. Achnanthidium cavitatum differs from other species in the A. minutissimum complex in outline, broad axial central area in the raphel ess valve, and slit-like areolae near the axial central area. We assessed their molecular characteristics by analyzing nuclear small subunit (SSU) rRNA and chloroplast-encoded rbcL gene sequences. Both the morphological comparison and the SSU and rbcL sequence analyses provide strong evidence to support the recognition of A. ovale and A. cavitatum as new species.

scholarly journals Phylogenetic position of Multicilia marina and the evolution of Amoebozoa

2006 ◽  
Vol 56 (6) ◽  
pp. 1449-1458 ◽  
Author(s):  
Sergey I. Nikolaev ◽  
Cédric Berney ◽  
Nikolai B. Petrov ◽  
Alexandre P. Mylnikov ◽  
José F. Fahrni ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Strong Support ◽  
Molecular Data ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Ssu Rrna ◽  
Ssu Rrna Gene ◽  
Slime Moulds ◽  
Ssu Rrna Gene Sequence

Recent molecular phylogenetic studies have led to the erection of the phylum Amoebozoa, uniting naked and testate lobose amoebae, the mycetozoan slime moulds and amitochondriate amoeboid protists (Archamoebae). Molecular data together with ultrastructural evidence have suggested a close relationship between Mycetozoa and Archamoebae, classified together in the Conosea, which was named after the cone of microtubules that, when present, is characteristic of their kinetids. However, the relationships of conoseans to other amoebozoans remain unclear. Here, we obtained the complete small-subunit (SSU) rRNA gene sequence (2746 bp) of the enigmatic, multiflagellated protist Multicilia marina, which has formerly been classified either in a distinct phylum, Multiflagellata, or among lobose amoebae. Our study clearly shows that Multicilia marina belongs to the Amoebozoa. Phylogenetic analyses including 60 amoebozoan SSU rRNA gene sequences revealed that Multicilia marina branches at the base of the Conosea, together with another flagellated amoebozoan, Phalansterium solitarium, as well as with Gephyramoeba sp., Filamoeba nolandi and two unidentified amoebae. This is the first report showing strong support for a clade containing all flagellated amoebozoans and we discuss the position of the root of the phylum Amoebozoa in the light of this result.

Morphology and phylogeny of a new species, Uroleptus (Caudiholosticha) antarctica n. sp. (Ciliophora, Hypotricha) from Greenwich Island in Antarctica

Zootaxa ◽  
2018 ◽  
Vol 4483 (3) ◽  
pp. 591 ◽  
Author(s):  
KYUNG-MIN PARK ◽  
GI-SIK MIN ◽  
SANGHEE KIM
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Ssu Rrna ◽  
Cortical Granules ◽  
Standard Methods ◽  
A New Species ◽  
Rrna Sequences

This paper describes the morphological features based on standard methods and estimates their phylogenetic position using small subunit ribosomal RNA (SSU rRNA) sequences of a Uroleptus (Caudiholosticha) antarctica n. sp. population investigated from moss of the Greenwich Island, Antarctica. The morphology of Uroleptus (Caudiholosticha) antarctica n. sp. is characterized as follows: 213.0–238.0×67.5–74.5 μm size in vivo; contractile vacuole located slightly above left of mid-body; cortical granules lacking; three frontal and two frontoterminal cirri; five to six transverse cirri; one pretransverse cirri; one right and one left marginal rows; six to seven dorsal kineties; three caudal cirri. 

A new species of Postia (Basidiomycota) based on morphological and molecular characteristics

Phytotaxa ◽  
2017 ◽  
Vol 292 (3) ◽  
pp. 287 ◽  
Author(s):  
HAI-SHENG YUAN ◽  
YAN-HONG MU ◽  
WEN-MIN QIN
Keyword(s):  
New Species ◽  
Southern China ◽  
Morphological Characteristics ◽  
Phylogenetic Position ◽  
Molecular Characteristics ◽  
Closely Related Species ◽  
Rdna Its ◽  
Rdna Its Sequences ◽  
A New Species ◽  
Cuticular Layer

A new wood-decaying polypore from southern China, Postia cylindrica, is described and illustrated using morphological characteristics and rDNA ITS sequences. The new species is characterized by resupinate to effused reflexed basidiocarps, cream to buff and azonate pileal surface, reddish-brown and incurved margin, gloeoplerous hyphal cells in cuticular layer, absence of cystidia, and cylindrical, thin-walled basidiospores. Molecular analyses confirm the phylogenetic position of the new species Postia. The discriminating characters of the new species and the closely related species are discussed.

scholarly journals Uncovering the diversity of monogeneans (Platyhelminthes) on endemic cypriniform fishes of the Balkan Peninsula: new species of Dactylogyrus and comments on their phylogeny and host-parasite associations in a biogeographic context

Parasite ◽  
2020 ◽  
Vol 27 ◽  
pp. 66
Author(s):  
Eva Řehulková ◽  
Michal Benovics ◽  
Andrea Šimková
Keyword(s):  
New Species ◽  
Bosnia And Herzegovina ◽  
Phylogenetic Reconstruction ◽  
Morphological Characteristics ◽  
Balkan Peninsula ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
Morphological Examination ◽  
Taxonomic Approach ◽  
Morphological And Molecular Data

Seven new species of Dactylogyrus Diesing, 1850 (Dactylogyridae) are described from the gills of seven endemic species of cyprinoids (Cyprinidae, Leuciscidae) inhabiting the Balkan Peninsula: Dactylogyrus romuli n. sp. from Luciobarbus albanicus (Greece), Dactylogyrus remi n. sp. from Luciobarbus graecus (Greece), Dactylogyrus recisus n. sp. from Pachychilon macedonicum (Greece), Dactylogyrus octopus n. sp. from Tropidophoxinellus spartiaticus (Greece), Dactylogyrus vukicae n. sp. from Delminichthys adspersus (Bosnia and Herzegovina), Dactylogyrus leptus n. sp. from Chondrostoma knerii (Bosnia and Herzegovina), and Dactylogyrus sandai n. sp. from Telestes karsticus (Croatia). To delineate species boundaries, we used an integrative taxonomic approach combining morphological and genetic data. With these tools, we illustrate that some species of monogeneans considered as cryptic might be designated as pseudocryptic (morphologically similar, not easily differentiated) after a posteriori detailed morphological examination, as happened with D. romuli n. sp. and D. remi n. sp. Thus, for accurate species characterization, it is particularly important to acquire both morphological and molecular data from the same individual specimens, ideally along with illustrations of taxonomically important structures directly taken from hologenophores. Using phylogenetic reconstruction, we investigated the phylogenetic position of newly described Dactylogyrus species within Dactylogyrus species from Balkan cyprinoids with regard to morphological characteristics, host range, and geographical distribution.

scholarly journals Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Racquel A. Singh ◽  
Vittorio Boscaro ◽  
Erick R. James ◽  
Anna Karnkowska ◽  
Martin Kolisko ◽  
...  
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Small Subunit ◽  
Rrna Genes ◽  
Rrna Gene ◽  
Host Identification ◽  
Large Subunit Rrna

AbstractCristamonadea is a large class of parabasalian protists that reside in the hindguts of wood-feeding insects, where they play an essential role in the digestion of lignocellulose. This group of symbionts boasts an impressive array of complex morphological characteristics, many of which have evolved multiple times independently. However, their diversity is understudied and molecular data remain scarce. Here we describe seven new species of cristamonad symbionts from Comatermes, Calcaritermes, and Rugitermes termites from Peru and Ecuador. To classify these new species, we examined cells by light and scanning electron microscopy, sequenced the symbiont small subunit ribosomal RNA (rRNA) genes, and carried out barcoding of the mitochondrial large subunit rRNA gene of the hosts to confirm host identification. Based on these data, five of the symbionts characterized here represent new species within described genera: Devescovina sapara n. sp., Devescovina aymara n. sp., Macrotrichomonas ashaninka n. sp., Macrotrichomonas secoya n. sp., and Macrotrichomonas yanesha n. sp. Additionally, two symbionts with overall morphological characteristics similar to the poorly-studied and probably polyphyletic ‘joeniid’ Parabasalia are classified in a new genus Runanympha n. gen.: Runanympha illapa n. sp., and Runanympha pacha n. sp.

Soil and litter nematode diversity of Mount Hamiguitan, the Philippines, with description of Bicirronema hamiguitanense n. sp. (Rhabditida: Bicirronematidae)

Nematology ◽  
2015 ◽  
Vol 17 (3) ◽  
pp. 325-344 ◽  
Author(s):  
Xue Qing ◽  
Wim Bert ◽  
Hanne Steel ◽  
Joeseph Quisado ◽  
Irma Tandingan De Ley
Keyword(s):  
New Species ◽  
Molecular Data ◽  
The Philippines ◽  
Phylogenetic Position ◽  
Species Status ◽  
Diagnostic Features ◽  
Lateral Field ◽  
Nematode Diversity ◽  
Common Group

The nematode diversity in soil and litter was investigated on Mount Hamiguitan, the Philippines, along four eco-habitats from elevations of 75-1600 m a.s.l. A total of 155 and 467 nematodes were identified to 39 and 62 genera from litter and soil, respectively. The nematode assemblages and diversity did not show any relation to eco-habitat or elevation. Bacterivorous nematodes were the most common group (37.5%). Acrobeloides was most abundant from the soil and Aphelenchoides from the litter. Bicirronema hamiguitanense n. sp. is herein described based on morphology, morphometrics and molecular data. The new species has the following diagnostic features: a wide lateral field one-fifth of its body diam. with four incisures forming two ornamented ridges; gubernaculum with proximal thickening; spicules (35-38 μm) and gubernaculum (18-20 μm) longer than B. caledoniense; and with 37 molecular autapomorphies supporting its new species status. The phylogenetic position of the new species within Cephalobomorpha is discussed.

Observations on Malenchus geraerti n. sp. (Rhabditida: Tylenchidae), a morphological and molecular phylogenetic study

Zootaxa ◽  
2018 ◽  
Vol 4369 (3) ◽  
pp. 406 ◽  
Author(s):  
MAJID PEDRAM ◽  
MAHYA SOLEYMANZADEH ◽  
EBRAHIM POURJAM ◽  
MAHYAR MOBASSERI
Keyword(s):  
New Species ◽  
Large Subunit ◽  
Small Subunit ◽  
Phylogenetic Study ◽  
Molecular Characteristics ◽  
Lsu Rdna ◽  
Northern Iran ◽  
Lateral Field ◽  
Molecular Phylogenetic ◽  
Short Body

Malenchus geraerti n. sp., recovered from natural regions of northern Iran, is described and illustrated based on morphological, morphometric and molecular data. The new species is characterized by having females with a short body, an anteriorly wide S-shaped amphidial opening narrowing posteriorly, cuticle with prominent annuli, lateral field a plain band with smooth margins, muscular metacorpus with well-developed valve and corresponding plates, spermatheca filled with small spheroid sperm cells, vulva sunken in body with large epiptygma and no flap, and conical tail tapering gradually to a more or less pointed tip. Males of the new species are characterized by having a short body, tylenchoid spicules, adcloacal bursa with smooth margin and tail similar to that of the female. Morphologically, the new species is similar to five known species of the genus: M. fusiformis, M. machadoi, M. pachycephalus, M. solovjovae and M. undulatus. It most closely resembles M. pachycephalus, but as a cryptic species it can be differentiated using morphological and molecular characteristics. Comparisons with the four other aforementioned species are also discussed. Molecular phylogenetic studies using partial sequences of small and large subunit ribosomal DNA fragments reveal that the new species forms a clade with the species M. neosulcus in the small subunit (SSU) rDNA, and two species of Lelenchus in the large subunit (LSU) rDNA tree. 

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