Identifying species of Bythinella (Caenogastropoda: Rissooidea): A plea for an integrative approach

Zootaxa ◽  
2007 ◽  
Vol 1563 (1) ◽  
pp. 1-16 ◽  
Author(s):  
MARTIN HAASE ◽  
THOMAS WILKE ◽  
PAUL MILDNER

The genus Bythinella comprises many species throughout Europe, but species delimitation, traditionally based on shell morphology and genital anatomy, is often a matter of debate. Out of an ongoing large-scale project on the phylogeny of the genus, we analyzed the relationships of species occurring in the south Austrian province Carinthia and in neighboring Slovenia as a model for similar cases of systematic and taxonomic ambiguity. Our analyses based on sequence data of a fragment of COI comprising 638 bp, morphological and anatomical investigations confirmed the presence of three species, B. opaca (Gallenstein, 1848), B. robiciana (Clessin, 1890) and B. angelitae nom. nov. for B. opaca (Frauenfeld, 1857). The latter, while genetically distinct, is morphologically and anatomically cryptic in that it can only be distinguished from B. opaca by the denticulation of the radular marginal teeth. B. robiciana, on the other hand, is morphologically well defined, but genetically not separable from B. opaca, its stem species. Thus, taxonomy in Bythinella has to be based on the integration of morphology, anatomy and genetics. Our phylogenetic analyses suggest that B. opaca has colonized Carinthia, which has largely been covered by glaciers during the last ice age, along two routes, one from the south and a second one from the southeast.

2010 ◽  
Vol 17 (5) ◽  
pp. 585-592 ◽  
Author(s):  
C. S. Quiroga Lombard ◽  
P. Balenzuela ◽  
H. Braun ◽  
D. R. Chialvo

Abstract. Spectral analyses performed on records of cosmogenic nuclides reveal a group of dominant spectral components during the Holocene period. Only a few of them are related to known solar cycles, i.e., the De Vries/Suess, Gleissberg and Hallstatt cycles. The origin of the others remains uncertain. On the other hand, time series of North Atlantic atmospheric/sea surface temperatures during the last ice age display the existence of repeated large-scale warming events, called Dansgaard-Oeschger (DO) events, spaced around multiples of 1470 years. The De Vries/Suess and Gleissberg cycles with periods close to 1470/7 (~210) and 1470/17 (~86.5) years have been proposed to explain these observations. In this work we found that a conceptual bistable model forced with the De Vries/Suess and Gleissberg cycles plus noise displays a group of dominant frequencies similar to those obtained in the Fourier spectra from paleo-climate during the Holocene. Moreover, we show that simply changing the noise amplitude in the model we obtain similar power spectra to those corresponding to GISP2 δ18O (Greenland Ice Sheet Project 2) during the last ice age. These results give a general dynamical framework which allows us to interpret the main characteristic of paleoclimate records from the last 100 000 years.


2021 ◽  
Vol 11 ◽  
Author(s):  
Jinyuan Chen ◽  
Guili Wu ◽  
Nawal Shrestha ◽  
Shuang Wu ◽  
Wei Guo ◽  
...  

Medicago and its relatives, Trigonella and Melilotus comprise the most important forage resources globally. The alfalfa selected from the wild relatives has been cultivated worldwide as the forage queen. In the Flora of China, 15 Medicago, eight Trigonella, and four Melilotus species are recorded, of which six Medicago and two Trigonella species are introduced. Although several studies have been conducted to investigate the phylogenetic relationship within the three genera, many Chinese naturally distributed or endemic species are not included in those studies. Therefore, the taxonomic identity and phylogenetic relationship of these species remains unclear. In this study, we collected samples representing 18 out of 19 Chinese naturally distributed species of these three genera and three introduced Medicago species, and applied an integrative approach by combining evidences from population-based morphological clusters and molecular data to investigate species boundaries. A total of 186 individuals selected from 156 populations and 454 individuals from 124 populations were collected for genetic and morphological analyses, respectively. We sequenced three commonly used DNA barcodes (trnH-psbA, trnK-matK, and ITS) and one nuclear marker (GA3ox1) for phylogenetic analyses. We found that 16 out of 21 species could be well delimited based on phylogenetic analyses and morphological clusters. Two Trigonella species may be merged as one species or treated as two subspecies, and Medicago falcata should be treated as a subspecies of the M. sativa complex. We further found that major incongruences between the chloroplast and nuclear trees mainly occurred among the deep diverging lineages, which may be resulted from hybridization, incomplete lineage sorting and/or sampling errors. Further studies involving a finer sampling of species associated with large scale genomic data should be employed to better understand the species delimitation of these three genera.


ZooKeys ◽  
2021 ◽  
Vol 1043 ◽  
pp. 1-20
Author(s):  
Manal Al-Kandari ◽  
P. Graham Oliver ◽  
Daniele Salvi

The rocky northern shores of Kuwait and those of the western, inner shores of Kuwait Bay are dominated by a small, densely encrusting oyster. The identity of this oyster has never been confirmed and was mistaken previously for a small Saccostrea. The shell morphology suggests that this species belongs to the subfamily Crassostreinae, but within that subfamily, the presence of marginal erect trumpet-shaped projections is so far unique. Phylogenetic analyses based on mitochondrial DNA sequence data confirmed that this species belongs to the Crassostreinae and has a sister position to the clade including Talonostrea talonata and T. zhanjiangensis. Genetic distance between this species and Talonostrea species is remarkably high, being ~20% for the cytochrome oxidase I gene and ~7% for the 16S rRNA gene. Based on morphological and molecular analyses, this oyster is therefore described here as Talonostrea salpinx Oliver, Salvi & Al-Kandari, sp. nov. Shell morphology is shown to be variable, and the different forms encountered are described. The wider distribution and origins of this species, whether native or introduced, are discussed.


Diversity ◽  
2019 ◽  
Vol 11 (9) ◽  
pp. 143 ◽  
Author(s):  
Albert Chen ◽  
Noor D. White ◽  
Roger B.J. Benson ◽  
Michael J. Braun ◽  
Daniel J. Field

Strisores is a clade of neoavian birds that include diurnal aerial specialists such as swifts and hummingbirds, as well as several predominantly nocturnal lineages such as nightjars and potoos. Despite the use of genome-scale molecular datasets, the phylogenetic interrelationships among major strisorean groups remain controversial. Given the availability of next-generation sequence data for Strisores and the clade’s rich fossil record, we reassessed the phylogeny of Strisores by incorporating a large-scale sequence dataset with anatomical data from living and fossil strisoreans within a Bayesian total-evidence framework. Combined analyses of molecular and morphological data resulted in a phylogenetic topology for Strisores that is congruent with the findings of two recent molecular phylogenomic studies, supporting nightjars (Caprimulgidae) as the extant sister group of the remainder of Strisores. This total-evidence framework allowed us to identify morphological synapomorphies for strisorean clades previously recovered using molecular-only datasets. However, a combined analysis of molecular and morphological data highlighted strong signal conflict between sequence and anatomical data in Strisores. Furthermore, simultaneous analysis of molecular and morphological data recovered differing placements for some fossil taxa compared with analyses of morphological data under a molecular scaffold, highlighting the importance of analytical decisions when conducting morphological phylogenetic analyses of taxa with molecular phylogenetic data. We suggest that multiple strisorean lineages have experienced convergent evolution across the skeleton, obfuscating the phylogenetic position of certain fossils, and that many distinctive specializations of strisorean subclades were acquired early in their evolutionary history. Despite this apparent complexity in the evolutionary history of Strisores, our results provide fossil support for aerial foraging as the ancestral ecological strategy of Strisores, as implied by recent phylogenetic topologies derived from molecular data.


2019 ◽  
Vol 95 (2) ◽  
pp. 373-390 ◽  
Author(s):  
Dusit Boonmekam ◽  
Duangduen Krailas ◽  
France Gimnich ◽  
Marco T. Neiber ◽  
Matthias Glaubrecht

Thiaridae are a speciose group of freshwater snails in tropical areas including a high number of described nominal taxa for which modern revisions are mostly lacking. Using an integrative approach, the systematic status of a group of thiarids from the Oriental region, including the nominal speciesMelaniaasperaandM.rudis, is reassessed on the basis of shell morphology and biometry, radula dentition patterns, and reproductive biology along with molecular genetic methods. Our results suggest that populations from the Oriental region cannot be distinguished on the basis of shell morphology, radula characters and their reproductive mode and are monophyletic based on mitochondrial sequences. Hence,M.rudiswithM.asperaare regarded as belonging to the same species along with several other nominal taxa that were previously included inM.rudis. Moreover, populations from Thailand and Australia, from where the species was not previously recorded, could be shown to form a monophyletic group together with samples from Indonesia. However, a generic affiliation withThiara, in which the investigated taxa were often included in the past, was not supported in our phylogenetic analyses, highlighting the need for a comprehensive revision of the genus-group systematics of Thiaridae as a whole.


2018 ◽  
Vol 94 (2) ◽  
pp. 461-493 ◽  
Author(s):  
Nuanpan Veeravechsukij ◽  
Duangduen Krailas ◽  
Suluck Namchote ◽  
Benedikt Wiggering ◽  
Marco T. Neiber ◽  
...  

The freshwater thiarid gastropod Tarebiagranifera (Lamarck, 1816), including taxa considered either congeneric or conspecific by earlier authors, is widespread and abundant in various lentic and lotic water bodies in mainland and insular Southeast Asia, with its range extending onto islands in the Indo-West-Pacific. This snail is, as one of the most frequent and major first intermediate host, an important vector for digenic trematodes causing several human diseases. As a typical thiarid T.granifera is viviparous and parthenogenetic, with various embryonic stages up to larger shelled juveniles developing within the female’s subhemocoelic (i.e non-uterine) brood pouch. Despite the known conchological disparity in other thiarids as well as this taxon, in Thailand Tarebia has been reported with the occurrence of one species only. In light of the polytypic variations found in shell morphology of freshwater snails in general and this taxon in particular, the lack of a modern taxonomic-systematic revision, using molecular genetics, has hampered more detailed insights to date, for example, into the locally varying trematode infection rates found in populations of Tarebia from across its range in Thailand as well as neighboring countries and areas. Here, we integrate evidence from phylogeographical analyses based on phenotypic variation (shell morphology, using biometry and geometric morphometrics) with highly informative and heterogeneous mtDNA sequence data (from the gene fragments cytochrome c oxidase subunit 1 and 16 S rRNA). We evaluate both the morphological and molecular genetic variation (using several phylogenetic analyses, including haplotype networks and a dated molecular tree), in correlation with differences in the reproductive biology among populations of Tarebia from various water bodies in the north, northwest, central, and south of Thailand, supplementing our respective analyses of parasite infections of this thiarid by cercaria of 15 trematode species, reported in a parallel study. Based on the comparison of topotypical material from the island of Timor, with specimens from 12 locations as reference, we found significant, albeit not congruent variation of both phenotype and genotype in Tarebiagranifera, based on 1,154 specimens from 95 Thai samples, representing a geographically wide-ranging, river-based cross-section of this country. Our analyses indicate the existence of two genetically distinct clades and hint at possible species differentiation within what has been traditionally considered as T.granifera. These two lineages started to split about 5 mya, possibly related to marine transgressions forming what became known as biogeographical barrier north of the Isthmus of Kra. Grounded on the site-by-site analysis of individual Tarebia populations, our country-wide chorological approach focussing on the conchologically distinct and genetically diverse lineages of Tarebia allows to discuss questions of this either reflecting subspecific forms versus being distinct species within a narrowly delimited species complex. Our results, therefore, provide the ground for new perspectives on the phylogeography, evolution and parasitology of Thai freshwater gastropods, exemplified here by these highly important thiarids.


2016 ◽  
Vol 30 (3) ◽  
pp. 201 ◽  
Author(s):  
Peter Decker

The South Australian members of the flat-millipede genera Oncocladosoma Jeekel, 1985 and Somethus Chamberlin, 1920 are revised using an integrative approach incorporating sequence data and morphology. The partial mitochondrial cytochrome c oxidase subunit I (COI) barcoding gene and partial nuclear ribosomal 28S rRNA were amplified and sequenced for 15 Oncocladosoma specimens and 10 Somethus specimens and the datasets were used for molecular phylogenetic analysis and genetic distance determination. Both morphology and molecular data indicate that all species of Oncocladosoma fall within Somethus, and therefore, Oncocladosoma is synonymised with Somethus. Within those species supported by molecular data, features of the solenomere tip are relatively stable and useful for species identification. 28S rRNA has proven to provide sufficient nucleotide variation to provisionally discriminate species. Oncocladosoma castaneum ingens Jeekel, 1985, O. clavigerum Jeekel, 1985 and O. conigerum Jeekel, 1985 are junior synonyms of Somethus castaneus, comb. nov., and Somethus modicus Jeekel, 2002 is a synonym of S. scopiferus Jeekel, 2002. New records and electron scanning micrographs of gonopods are provided for S. castaneus, comb. nov., S. inflatus (Jeekel, 2002), comb. nov., S. lancearius Jeekel, 2002, S. scopiferus Jeekel, 2002, and Somethus grossi Jeekel, 1985, together with a key to the South Australian species of Somethus.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Hui-Xia Chen ◽  
Xiao-Hong Gu ◽  
Xue-Feng Ni ◽  
Liang Li

Abstract Background Nematodes of the family Cosmocercidae (Ascaridomorpha: Cosmocercoidea) are mainly parasitic in the digestive tract of various amphibians and reptiles worldwide. However, our knowledge of the molecular phylogeny of the Cosmocercidae is still far from comprehensive. The phylogenetic relationships between Cosmocercidae and the other two families, Atractidae and Kathlaniidae, in the superfamily Cosmocercoidea are still under debate. Moreover, the systematic position of some genera within Cosmocercidae remains unclear. Methods Nematodes collected from Polypedates megacephalus (Hallowell) (Anura: Rhacophoridae) were identified using morphological (light and scanning electron microscopy) and molecular methods [sequencing the small ribosomal DNA (18S), internal transcribed spacer 1 (ITS-1), large ribosomal DNA (28S) and mitochondrial cytochrome c oxidase subunit 1 (cox1) target regions]. Phylogenetic analyses of cosmocercoid nematodes using 18S + 28S sequence data were performed to clarify the phylogenetic relationships of the Cosmocercidae, Atractidae and Kathlaniidae in the Cosmocercoidea and the systematic position of the genus Aplectana in Cosmocercidae. Results Morphological and genetic evidence supported the hypothesis that the nematode specimens collected from P. megacephalus represent a new species of Aplectana (Cosmocercoidea: Cosmocercidae). Our phylogenetic results revealed that the Cosmocercidae is a monophyletic group, but not the basal group in Cosmocercoidea as in the traditional classification. The Kathlaniidae is a paraphyletic group because the subfamily Cruziinae within Kathlaniidae (including only the genus Cruzia) formed a seperate lineage. Phylogenetic analyses also showed that the genus Aplectana has a closer relationship to the genus Cosmocerca in Cosmocercidae. Conclusions Our phylogenetic results suggested that the subfamily Cruziinae should be moved from the hitherto-defined family Kathlaniidae and elevated as a separate family, and the genus Cosmocerca is closely related to the genus Aplectana in the family Cosmocercidae. The present study provided a basic molecular phylogenetic framework for the superfamily Cosmocercoidea based on 18S + 28S sequence data for the first time to our knowledge. Moreover, a new species, A. xishuangbannaensis n. sp., was described using integrative approach. Graphical abstract


2021 ◽  
Author(s):  
Willy De Mattia ◽  
Susanne Reier ◽  
Elisabeth Haring

The taxonomy and systematics of the door snail genus Siciliaria was revised based on an integrative approach including a comprehensive genital anatomical investigation, which was combined with shell morphology and DNA sequence data (mitochondrial COI, nuclear ITS2 sequences). The genital morphology of 118 specimens of 21 taxa from 43 populations was investigated and a new general description of the genital morphology of the genus is provided. Additionally, 26 specimens of 14 taxa of additional 5 genera (sensu Bank & Neubert, 2019) of Alopiinae (Mauritanica, Charpentieria, Stigmatica, Gibbularia, Papillifera, and the here reintroduced genus Tirolica) were included in the genetic analyses. In the phylogenetic tree based on COI sequences, the species of the genus Siciliaria s.l. from northwestern Sicily were found within two separate highly supported main clades. In the tree based on the nuclear ITS2 marker sequence, resolution was considerably lower, albeit, the tree partially confirmed the mitochondrial tree. We re-introduced Sicania Tomlin, 1929 (corresponding to main clade II in the tree). Siciliaria scarificata did not appear in one of the two main clades but was the sister group of Mauretanica perinni polygyra. Concerning monophyly of species, only the widely distributed S. calcarae was paraphyletic in the COI tree, a finding that has to be investigated further with multiple marker sequences. For the other genera (Charpentieria, Stigmatica, Gibbularia, Papillifera and Tirolica) we provide here also detailed descriptions of the genital anatomy of 51 taxa for a total amount of 191 dissected specimens. Several of these taxa could be included in the phylogenetic analysis and were found in several quite distinct lineages. Although the taxon sampling of these taxa was far from being complete, the comprehensive data provided here (concerning morphology, genetics and distribution) provide first insights into this diverse group of clausiliid taxa.


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