Two- and Four-Stream Combination Approximations for Computation of Diffuse Actinic Fluxes

2010 ◽  
Vol 67 (10) ◽  
pp. 3238-3252 ◽  
Author(s):  
Hua Zhang ◽  
Feng Zhang ◽  
Qiang Fu ◽  
Zhongping Shen ◽  
Peng Lu

Abstract The δ-two- and four-stream combination approximations, which use a source function from the two-stream approximations and evaluate intensities in the four-stream directions, are formulated for the calculation of diffuse actinic fluxes. The accuracy and efficiency of the three computational techniques—the δ-two-stream approximations, the δ-two- and four-stream combination approximations based on various two-stream approaches, and the δ-four-stream approximation—have been investigated. The diffuse actinic fluxes are examined by considering molecular, aerosol, haze, and cloud scattering over a wide range of solar zenith angles, optical depths, and surface albedos. In view of the overall accuracy and computational efficiency, the δ-two- and four-stream combination method based on the quadrature scheme appears to be well suited to radiative transfer calculations involving photodissociation processes.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Muhammad Umair Khan ◽  
Gul Hassan ◽  
Rayyan Ali Shaukat ◽  
Qazi Muhammad Saqib ◽  
Mahesh Y. Chougale ◽  
...  

AbstractThis paper proposes a signal processed systematic 3 × 3 humidity sensor array with all range and highly linear humidity response based on different particles size composite inks and different interspaces of interdigital electrodes (IDEs). The fabricated sensors are patterned through a commercial inkjet printer and the composite of Methylene Blue and Graphene with three different particle sizes of bulk Graphene Flakes (BGF), Graphene Flakes (GF), and Graphene Quantum Dots (GQD), which are employed as an active layer using spin coating technique on three types of IDEs with different interspaces of 300, 200, and 100 µm. All range linear function (0–100% RH) is achieved by applying the linear combination method of nine sensors in the signal processing field, where weights for linear combination are required, which are estimated by the least square solution. The humidity sensing array shows a fast response time (Tres) of 0.2 s and recovery time (Trec) of 0.4 s. From the results, the proposed humidity sensor array opens a new gateway for a wide range of humidity sensing applications with a linear function.


2018 ◽  
Vol 25 (4) ◽  
pp. 1135-1143 ◽  
Author(s):  
Faisal Khan ◽  
Suresh Narayanan ◽  
Roger Sersted ◽  
Nicholas Schwarz ◽  
Alec Sandy

Multi-speckle X-ray photon correlation spectroscopy (XPCS) is a powerful technique for characterizing the dynamic nature of complex materials over a range of time scales. XPCS has been successfully applied to study a wide range of systems. Recent developments in higher-frame-rate detectors, while aiding in the study of faster dynamical processes, creates large amounts of data that require parallel computational techniques to process in near real-time. Here, an implementation of the multi-tau and two-time autocorrelation algorithms using the Hadoop MapReduce framework for distributed computing is presented. The system scales well with regard to the increase in the data size, and has been serving the users of beamline 8-ID-I at the Advanced Photon Source for near real-time autocorrelations for the past five years.


2018 ◽  
Vol 18 (16) ◽  
pp. 12105-12121 ◽  
Author(s):  
Thomas Fauchez ◽  
Steven Platnick ◽  
Tamás Várnai ◽  
Kerry Meyer ◽  
Céline Cornet ◽  
...  

Abstract. In a context of global climate change, the understanding of the radiative role of clouds is crucial. On average, ice clouds such as cirrus have a significant positive radiative effect, but under some conditions the effect may be negative. However, many uncertainties remain regarding the role of ice clouds on Earth's radiative budget and in a changing climate. Global satellite observations are particularly well suited to monitoring clouds, retrieving their characteristics and inferring their radiative impact. To retrieve ice cloud properties (optical thickness and ice crystal effective size), current operational algorithms assume that each pixel of the observed scene is plane-parallel and homogeneous, and that there is no radiative connection between neighboring pixels. Yet these retrieval assumptions are far from accurate, as real radiative transfer is 3-D. This leads to the plane-parallel and homogeneous bias (PPHB) plus the independent pixel approximation bias (IPAB), which impacts both the estimation of top-of-the-atmosphere (TOA) radiation and the retrievals. An important factor that determines the impact of these assumptions is the sensor spatial resolution. High-spatial-resolution pixels can better represent cloud variability (low PPHB), but the radiative path through the cloud can involve many pixels (high IPAB). In contrast, low-spatial-resolution pixels poorly represent the cloud variability (high PPHB), but the radiation is better contained within the pixel field of view (low IPAB). In addition, the solar and viewing geometry (as well as cloud optical properties) can modulate the magnitude of the PPHB and IPAB. In this, Part II of our study, we simulate TOA 0.86 and 2.13 µm solar reflectances over a cirrus uncinus scene produced by the 3DCLOUD model. Then, 3-D radiative transfer simulations are performed with the 3DMCPOL code at spatial resolutions ranging from 50 m to 10 km, for 12 viewing geometries and nine solar geometries. It is found that, for simulated nadir observations taken at resolution higher than 2.5 km, horizontal radiation transport (HRT) dominates biases between 3-D and 1-D reflectance calculations, but these biases are mitigated by the side illumination and shadowing effects for off-zenith solar geometries. At resolutions coarser than 2.5 km, PPHB dominates. For off-nadir observations at resolutions higher than 2.5 km, the effect that we call THEAB (tilted and homogeneous extinction approximation bias) due to the oblique line of sight passing through many cloud columns contributes to a large increase of the reflectances, but 3-D radiative effects such as shadowing and side illumination for oblique Sun are also important. At resolutions coarser than 2.5 km, the PPHB is again the dominant effect. The magnitude and resolution dependence of PPHB and IPAB is very different for visible, near-infrared and shortwave infrared channels compared with the thermal infrared channels discussed in Part I of this study. The contrast of 3-D radiative effects between solar and thermal infrared channels may be a significant issue for retrieval techniques that simultaneously use radiative measurements across a wide range of solar reflectance and infrared wavelengths.


2018 ◽  
Vol 18 (20) ◽  
pp. 1719-1736 ◽  
Author(s):  
Sharanya Sarkar ◽  
Khushboo Gulati ◽  
Manikyaprabhu Kairamkonda ◽  
Amit Mishra ◽  
Krishna Mohan Poluri

Background: To carry out wide range of cellular functionalities, proteins often associate with one or more proteins in a phenomenon known as Protein-Protein Interaction (PPI). Experimental and computational approaches were applied on PPIs in order to determine the interacting partners, and also to understand how an abnormality in such interactions can become the principle cause of a disease. Objective: This review aims to elucidate the case studies where PPIs involved in various human diseases have been proven or validated with computational techniques, and also to elucidate how small molecule inhibitors of PPIs have been designed computationally to act as effective therapeutic measures against certain diseases. Results: Computational techniques to predict PPIs are emerging rapidly in the modern day. They not only help in predicting new PPIs, but also generate outputs that substantiate the experimentally determined results. Moreover, computation has aided in the designing of novel inhibitor molecules disrupting the PPIs. Some of them are already being tested in the clinical trials. Conclusion: This review delineated the classification of computational tools that are essential to investigate PPIs. Furthermore, the review shed light on how indispensable computational tools have become in the field of medicine to analyze the interaction networks and to design novel inhibitors efficiently against dreadful diseases in a shorter time span.


Author(s):  
Brian Henry ◽  
Gardner Yost ◽  
Robert Molokie ◽  
Thomas J. Royston

Acute chest syndrome (ACS) is a leading cause of death for those with sickle cell disease (SCD). ACS is defined by the development of a new pulmonary infiltrate on chest X-ray, with fever and respiratory symptoms. Efforts have been made to apply various technologies in the hospital setting to provide earlier detection of ACS than X-ray, but they are expensive, increase radiation exposure to the patient, and are not technologies that are easily transferrable for home use to help with early diagnosis. We present preliminary studies on patients suggesting that acoustical measurements recorded quantitatively with contact sensors (electronic stethoscopes) and analyzed using advanced computational analysis methods may provide an earlier diagnostic indicator of the onset of ACS than is possible with current clinical practice. Novel in silico models of respiratory acoustics utilizing image-based and algorithmically developed lungs with full conducting airway trees support and help explain measured acoustic trends and provide guidance on the next steps in developing and translating a diagnostic approach. More broadly, the experimental and computational techniques introduced herein, while focused on monitoring and predicting the onset of ACS, could catalyze further advances in mobile health (mhealth)-enabled, computer-based auscultative diagnoses for a wide range of cardiopulmonary pathologies.


2020 ◽  
Author(s):  
Weiguang Mao ◽  
Maziyar Baran Pouyan ◽  
Dennis Kostka ◽  
Maria Chikina

AbstractMotivationSingle cell RNA sequencing (scRNA-seq) enables transcriptional profiling at the level of individual cells. With the emergence of high-throughput platforms datasets comprising tens of thousands or more cells have become routine, and the technology is having an impact across a wide range of biomedical subject areas. However, scRNA-seq data are high-dimensional and affected by noise, so that scalable and robust computational techniques are needed for meaningful analysis, visualization and interpretation. Specifically, a range of matrix factorization techniques have been employed to aid scRNA-seq data analysis. In this context we note that sources contributing to biological variability between cells can be discrete (or multi-modal, for instance cell-types), or continuous (e.g. pathway activity). However, no current matrix factorization approach is set up to jointly infer such mixed sources of variability.ResultsTo address this shortcoming, we present a new probabilistic single-cell factor analysis model, Non-negative Independent Factor Analysis (NIFA), that combines features of complementary approaches like Independent Component Analysis (ICA), Principal Component Analysis (PCA), and Non-negative Matrix Factorization (NMF). NIFA simultaneously models uni- and multi-modal latent factors and can so isolate discrete cell-type identity and continuous pathway-level variations into separate components. Similar to NMF, NIFA constrains factor loadings to be non-negative in order to increase biological interpretability. We apply our approach to a range of data sets where cell-type identity is known, and we show that NIFA-derived factors outperform results from ICA, PCA and NMF in terms of cell-type identification and biological interpretability. Studying an immunotherapy dataset in detail, we show that NIFA identifies biomedically meaningful sources of variation, derive an improved expression signature for regulatory T-cells, and identify a novel myeloid cell subtype associated with treatment response. Overall, NIFA is a general approach advancing scRNA-seq analysis capabilities and it allows researchers to better take advantage of their data. NIFA is available at https://github.com/wgmao/[email protected]


2006 ◽  
Vol 2 (S238) ◽  
pp. 375-376 ◽  
Author(s):  
René W. Goosmann ◽  
C. Martin Gaskell ◽  
Masatoshi Shoji

AbstractWe introduce a new, publicly available Monte Carlo radiative transfer code, Stokes, which has been developed to model polarization induced by scattering of free electrons and dust grains. It can be used in a wide range of astrophysical applications. Here, we apply it to model the polarization produced by the equatorial obscuring and scattering tori assumed to exist in active galactic nuclei (AGNs). We present optical/UV modeling of dusty tori with a curved inner shape and for two different dust types. The polarization spectra enable us to clearly distinguish between the two dust compositions. The Stokes code and its documentation can be freely downloaded from http://www.stokes-program.info/.


1977 ◽  
Vol 32 (2) ◽  
pp. 156-159
Author(s):  
D. F. Düchs ◽  
J. Oxenius

The classical problem of radiative transfer in a spectral line, due to two-level atoms, in a homogeneous medium is reconsidered. It is pointed out that the source function used up to now in the literature neglects the diffusion of the excited atoms. In many cases this assumption is not justified. In the low-temperature limit kT ≪ hv, the correct source function, allowing for diffusion of excited atoms, obeys an integro-differential equation


2018 ◽  
Vol 10 (10) ◽  
pp. 1632 ◽  
Author(s):  
Bin Yang ◽  
Yuri Knyazikhin ◽  
Donghui Xie ◽  
Haimeng Zhao ◽  
Junqiang Zhang ◽  
...  

Interpreting remotely-sensed data requires realistic, but simple, models of radiative transfer that occurs within a vegetation canopy. In this paper, an improved version of the stochastic radiative transfer model (SRTM) is proposed by assuming that all photons that have not been specularly reflected enter the leaf interior. The contribution of leaf specular reflection is considered by modifying leaf scattering phase function using Fresnel reflectance. The canopy bidirectional reflectance factor (BRF) estimated from this model is evaluated through comparisons with field-measured maize BRF. The result shows that accounting for leaf specular reflection can provide better performance than that when leaf specular reflection is neglected over a wide range of view zenith angles. The improved version of the SRTM is further adopted to investigate the influence of leaf specular reflection on the canopy radiative regime, with emphases on vertical profiles of mean radiation flux density, canopy absorptance, BRF, and normalized difference vegetation index (NDVI). It is demonstrated that accounting for leaf specular reflection can increase leaf albedo, which consequently increases canopy mean upward/downward mean radiation flux density and canopy nadir BRF and decreases canopy absorptance and canopy nadir NDVI when leaf angles are spherically distributed. The influence is greater for downward/upward radiation flux densities and canopy nadir BRF than that for canopy absorptance and NDVI. The results provide knowledge of leaf specular reflection and canopy radiative regime, and are helpful for forward reflectance simulations and backward inversions. Moreover, polarization measurements are suggested for studies of leaf specular reflection, as leaf specular reflection is closely related to the canopy polarization.


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