scholarly journals Revealing hidden species diversity in closely related species using nuclear SNPs, SSRs and DNA sequences – a case study in the tree genus Milicia

2016 ◽  
Vol 16 (1) ◽  
Author(s):  
Kasso Daïnou ◽  
Céline Blanc-Jolivet ◽  
Bernd Degen ◽  
Priscilla Kimani ◽  
Dyana Ndiade-Bourobou ◽  
...  
2019 ◽  
Vol 24 (5) ◽  
pp. 866
Author(s):  
Jerzy Błoszyk ◽  
Katarzyna Buczkowska ◽  
Anna Maria Bobowicz ◽  
Alina Bączkiewicz ◽  
Zbigniew Adamski ◽  
...  

The study presented in this research paper is the first taxonomic investigation focusing on Uropodina (Acari: Mesostigmata) mites with a brief discussion of the genetic differences of two very closely related species from the genus Oodinychus Berlese, 1917, i.e. O. ovalis (C.L. Koch, 1839) and O. karawaiewi (Berlese, 1903). These two morphologically similar species are quite common and they have a wide range of occurrence in Europe. They also live in almost the same types of habitat. However, O. ovalis usually exhibits higher abundance and frequency of occurrence. The major aim of the study was to carry out a comparative analysis of the systematic position, morphological and biological differences, as well as habitat preferences and distribution of O. ovalis and O. karawaiewi. The next aim was to ascertain whether the differences in number and frequency of these species may stem from the genetic differences at the molecular level (16S rDNA and COI). The study shows that O. ovalis, which is a more abundant species than O. karawaiewi, turned out to be genetically more polymorphic.


Phytotaxa ◽  
2019 ◽  
Vol 424 (3) ◽  
pp. 147-157 ◽  
Author(s):  
CORINNA ROMEIKAT ◽  
ALEJANDRO IZQUIERDO LÓPEZ ◽  
CHRISTINE TIETZE ◽  
JULIANE KRETSCHMANN ◽  
MARC GOTTSCHLING

The application of scientific names is determined by means of nomenclatural types, and every name has to be typified properly. The concept has limitations for unicellular organisms, because original material frequently consists of drawings and/or inadequately preserved physical material. Peridinium cinctum is an abundant freshwater microalga and variable in both morphology and genotype. Morphological variation is mainly expressed in its epithecal conformation: shape deviations of plates, plate rearrangements, plate fusion and plate additions. Different epithecal conformations were traditionally described as either varieties of P. cinctum or were established as closely related species. Despite this, relations between varieties, ribotypes and geographic locations were oversighted, and the full spectrum of plate variation in P. cinctum is still not well represented. For this reason, we sampled localities in Germany and Poland, from which varieties of P. cinctum were described a century ago. We cultivated monoclonal strains, exhibiting two distinct ITS ribotypes, and assessed their epithecal variation of morphology. Based on ca 2,500 observations of individual cells we report a plethora of both plate and suture deviations from the archetypical epithecal conformation of P. cinctum. Morphologies corresponding to previously described varieties were rare, even at their type localities. Nevertheless, we found morphologies consistent with protologues in four cases and use this material for epitypification. These varieties are now linked to specific DNA sequences, allowing reliable application of scientific names for future studies.


Diversity ◽  
2018 ◽  
Vol 10 (4) ◽  
pp. 123 ◽  
Author(s):  
Susannah Johnson-Fulton ◽  
Linda Watson

Species of the Cochlospermaceae, a small mostly pantropical plant family, were evaluated at a continental scale for medicinal uses in traditional medicine. This ethnobotanical information was placed in a phylogenetic framework to make informed predictions in the search for new medicines and bioactive compounds. Medicinal plant-use data were mapped onto a molecular phylogeny based on DNA sequences of nuclear and chloroplast markers. Associations of medicinal uses among closely related species occurring in different geographic regions and among diverse cultures were evaluated. The most common medicinal uses for these species are those used to treat skin ailments, gastro-intestinal problems, malaria, and liver issues. The plant species with the most numerous uses is Cochlospermum tinctorium, which occurs primarily in West Africa. Closely related species being used by cultural groups in different geographic regions to treat the same illnesses suggests the presence of bioactive compounds with potential biomedical value, since they may represent independent discoveries of similar medicinally-active compounds. This leads to the speculation that those closely related species not currently being used to treat these ailments may also contain identical or similar medicinally-active compounds and are worthy of laboratory investigations.


Phytotaxa ◽  
2019 ◽  
Vol 413 (1) ◽  
pp. 39-48 ◽  
Author(s):  
HIRAN A. ARIYAWANSA ◽  
E. B. GARETH JONES

The genus Ophiosphaerella contains 14 formerly illustrated species and is characterized by papillated ascomata bearing fissitunicate cylindrical asci frequently narrower near the base, with a short furcate pedicel and filamentous, pale brown, multi-septate ascospores without swollen cells or separating into part spores. We describe an Ophiosphaerella taxon that is new to science isolated from Yushania niitakayamensis in Cilai Mountain, Taiwan. We conducted polyphasic methods using single and multi-locus (ITS, LSU, SSU, and tef1-α) phylogenetic reconstruction united with morphology to evaluate the natural classification of the novel taxon. The results show that our Ophiosphaerella isolates are different from closely related species O. aquaticus and O. agrostidis based on distinct size differences of the ascomata, asci, ascospores, host and DNA sequences data, thus should be recognised here as a new taxon Ophiosphaerella taiwanica sp. nov.


PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0160611 ◽  
Author(s):  
Fan-Hong Wang ◽  
Jin-Mei Lu ◽  
Jun Wen ◽  
Atsushi Ebihara ◽  
De-Zhu Li

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