scholarly journals Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Yali Wei ◽  
Fang Wang ◽  
Jiangli Gao ◽  
Yaolong Huang ◽  
Wei Ren ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Biological Diversity ◽  
Plant Growth Promoting Rhizobacteria ◽  
Nutrient Content ◽  
Community Diversity ◽  
Sandy Land ◽  
Different Types ◽  
Culture Independent ◽  
Plant Growth Promoting ◽  
Culture Dependent

Abstract Background Minqin is suffering from a serious desertification, whereas the knowledge about its bacterial community is limited. Herein, based on Nitraria tangutorum and Haloxylon ammodendron from Minqin, the bacterial community diversities in fixed sandy land, semi-fixed sandy land and shifting sandy land were investigated by combining with culture-dependent and culture-independent methods. Results Minqin stressed with high salinity and poor nutrition is an oligotrophic environment. Bacterial community in Minqin was shaped primarily by the presence of host plants, whereas the type of plant and sandy land had no marked effect on those, which displayed a better survival in the rhizospheres of N. tangutorum and H. ammodendron. The dominant groups at phyla level were Actinobacteria, Firmicutes, Proteobacteria, Bacteroidetes, Planctomycetes, Chloroflexi, Acidobacteria and Candidate_division_TM7. The abundance of Firmicutes with ability of desiccation-tolerance was significantly higher in harsh environment, whereas Bacteroidetes were mainly distributed in areas with high nutrient content. The abundances of Proteobacteria and Bacteroidetes were relatively high in the rhizospheres of N. tangutorum and H. ammodendron, which had more plant-growth promoting rhizobacteria. A large number of Actinobacteria were detected, of which the most abundant genus was Streptomyces. The physicochemical factors related to the diversity and distribution of the bacterial community were comprehensively analyzed, such as pH, electrical conductivity, soil organic matter, C/N and sand, and the results indicated that Minqin was more suitable for the growth of N. tangutorum, which should be one of most important sand-fixing plants in Minqin. Conclusions The bacterial community diversities in different types of sandy lands of Minqin were comprehensively and systematically investigated by culture-dependent and culture-independent approaches, which has a great significance in maintaining/restoring biological diversity.

scholarly journals The bacterial community of the lone star tick (Amblyomma americanum)

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
L. Paulina Maldonado-Ruiz ◽  
Saraswoti Neupane ◽  
Yoonseong Park ◽  
Ludek Zurek
Keyword(s):  
Bacterial Community ◽  
Amblyomma Americanum ◽  
Rrna Gene ◽  
Culturable Bacteria ◽  
Core Microbiome ◽  
Lone Star Tick ◽  
Animal Pathogens ◽  
Wide Range ◽  
Culture Independent ◽  
Culture Dependent

Abstract Background The lone star tick (Amblyomma americanum), an important vector of a wide range of human and animal pathogens, is very common throughout the East and Midwest of the USA. Ticks are known to carry non-pathogenic bacteria that may play a role in their vector competence for pathogens. Several previous studies using the high throughput sequencing (HTS) technologies reported the commensal bacteria in a tick midgut as abundant and diverse. In contrast, in our preliminary survey of the field collected adult lone star ticks, we found the number of culturable/viable bacteria very low. Methods We aimed to analyze the bacterial community of A. americanum by a parallel culture-dependent and a culture-independent approach applied to individual ticks. Results We analyzed 94 adult females collected in eastern Kansas and found that 60.8% of ticks had no culturable bacteria and the remaining ticks carried only 67.7 ± 42.8 colony-forming units (CFUs)/tick representing 26 genera. HTS of the 16S rRNA gene resulted in a total of 32 operational taxonomic units (OTUs) with the dominant endosymbiotic genera Coxiella and Rickettsia (> 95%). Remaining OTUs with very low abundance were typical soil bacterial taxa indicating their environmental origin. Conclusions No correlation was found between the CFU abundance and the relative abundance from the culture-independent approach. This suggests that many culturable taxa detected by HTS but not by culture-dependent method were not viable or were not in their culturable state. Overall, our HTS results show that the midgut bacterial community of A. americanum is very poor without a core microbiome and the majority of bacteria are endosymbiotic.

Effects of inoculation with plant growth-promoting rhizobacteria from the Brazilian Amazon on the bacterial community associated with maize in field

2022 ◽  
Vol 170 ◽  
pp. 104297
Author(s):  
Jessica Aparecida Ferrarezi ◽  
Paula de Almeida Carvalho-Estrada ◽  
Bruna Durante Batista ◽  
Rafael Martins Aniceto ◽  
Bruno Augusto Prohmann Tschoeke ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Plant Growth ◽  
Plant Growth Promoting Rhizobacteria ◽  
Brazilian Amazon ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals A Culture-Independent and Culture-Dependent Study of the Bacterial Community from the Bedrock Soil Interface

2015 ◽  
Vol 05 (13) ◽  
pp. 842-857 ◽  
Author(s):  
Karen Olsson-Francis ◽  
Carl P. Boardman ◽  
Victoria K. Pearson ◽  
Paul F. Schofield ◽  
Anna Oliver ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Culture Independent ◽  
Soil Interface ◽  
Culture Dependent

Comparison of the bacterial community and characterization of plant growth-promoting rhizobacteria from different genotypes of Chrysopogon zizanioides (L.) Roberty (Vetiver) rhizospheres

2009 ◽  
Vol 47 (4) ◽  
pp. 363-370 ◽  
Author(s):  
Juliana Mendes Monteiro ◽  
Renata Estebanez Vollú ◽  
Marcia Reed Rodrigues Coelho ◽  
Celuta Sales Alviano ◽  
Arie Fitzgerald Blank ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Plant Growth ◽  
Plant Growth Promoting Rhizobacteria ◽  
Chrysopogon Zizanioides ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals Soil and Rhizosphere Bacterial Diversity in Maize Agro- Ecosystem

2017 ◽  
Vol 6 (3) ◽  
pp. 35 ◽  
Author(s):  
Maria Teresa Federici Rodriguez ◽  
Natalia Bajsa Valverde ◽  
Paula Lagurara ◽  
Santiago Revale ◽  
Jackson Antonio Marcondes de Souza ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Management Practices ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Community Diversity ◽  
Rrna Gene ◽  
Phenological Stages ◽  
Maize Production ◽  
Maize Cultivars ◽  
Culture Independent ◽  
Gradient Gel Electrophoresis

Management practices used in maize production have an impact on soil agro- ecosystems where different microbial communities coexist. Soil inhabiting bacteria are numerous and diverse, but we know very little about their ecological distribution. Here we analyzed the bacterial community diversity in the rhizosphere of two transgenic maize cultivars, in agricultural soil before sowing and in non-cultivated soil in an experimental site in the south region of Uruguay. We followed two culture-independent methods: DGGE (denaturing gradient gel electrophoresis) and 454-pyrosequencing of 16S rRNA gene amplicon. Through pyrosequencing, the three environments analyzed presented differences in terms of bacterial composition. However, no differences were found in the relative abundance of the ten most represented phyla in the rhizosphere of the two cultivars at different phenological stages. We found significant differences of Bacteroidetes, Gemmatimonadetes, Planctomycetes, Proteobacteria and Verrucomicrobia phyla when comparing agricultural and non-cultivated soils, as well as a significant enrichment of members of the phylum Gemmatimonadetes in all rhizosphere samples compared to soil. Through DGGE analysis we evidenced that maize rhizosphere bacterial communities changed at different phenological stages in both cultivars. We also provided baseline information about bacterial specific taxa within maize agro- ecosystem for further evaluation of possible rhizosphere bacterial community shifts of genetically modified maize cultivars under different management practices.

scholarly journals Plant Growth Promoting Rhizobacteria Alleviate Aluminum Toxicity and Ginger Bacterial Wilt in Acidic Continuous Cropping Soil

2020 ◽  
Vol 11 ◽  
Author(s):  
Shuting Zhang ◽  
Qipeng Jiang ◽  
Xiaojiao Liu ◽  
Liehua Liu ◽  
Wei Ding
Keyword(s):  
Bacterial Community ◽  
Plant Growth ◽  
Bacterial Wilt ◽  
Aluminum Toxicity ◽  
Bacterial Community Composition ◽  
Plant Growth Promoting Rhizobacteria ◽  
Continuous Cropping ◽  
Aluminum Ions ◽  
Plant Growth Promoting ◽  
Growth Promoting

Long-term monoculture cropping is usually accompanied by soil acidification and microbial community shifts. Soil aluminum ions are dissolved under acidic condition (pH < 5.0), and the resulting aluminum bioavailability can cause toxic effects in plants. In this study, we investigated the bacterial community compositions and aluminum toxicity in fields monocultured with ginger for 35 years, 15 years, and 1 year. Within these fields are ginger plants without and with ginger bacterial wilt disease. The results confirmed that the degree of aluminum toxicity in the diseased soil was more severe than that in the healthy soil. Continuous cropping can significantly increase the bacterial diversity and change the bacterial community composition of ginger rhizosphere soil. The relative abundance of plant growth-promoting rhizobacteria (PGPRs) was increased in the soils used for the continuous cropping of ginger. Additionally, aluminum toxicity had a significant positive correlation with Bacillus, Pseudomonas, Arthrobacter, and Serratia in healthy soils. Based on these results, aluminum stress may stimulate the increase of PGPRs (Bacillus, Pseudomonas, Arthrobacter, and Serratia), thereby alleviating ginger aluminum toxicity and bacterial wilt in extremely acidic soil (pH < 4.5).

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