scholarly journals Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Rongna Wang ◽  
Junjie Qian ◽  
Zhongming Fang ◽  
Jihua Tang
Keyword(s):  
Axillary Bud ◽  
Rice Seedlings ◽  
Insight Into ◽  
Axillary Bud Outgrowth ◽  
Nitrogen Supplies

scholarly journals Lack of Cytosolic Glutamine Synthetase1;2 Activity Reduces Nitrogen-Dependent Biosynthesis of Cytokinin Required for Axillary Bud Outgrowth in Rice Seedlings

2017 ◽  
Vol 58 (4) ◽  
pp. 679-690 ◽  
Author(s):  
Miwa Ohashi ◽  
Keiki Ishiyama ◽  
Soichi Kojima ◽  
Mikiko Kojima ◽  
Hitoshi Sakakibara ◽  
...  
Keyword(s):  
Axillary Bud ◽  
Rice Seedlings ◽  
Axillary Bud Outgrowth

scholarly journals Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

2020 ◽  
Author(s):  
Rongna Wang ◽  
Junjie Qian ◽  
Zhongming Fang ◽  
Jihua Tang
Keyword(s):  
Growth Rate ◽  
Morphological Changes ◽  
Expression Profiles ◽  
Axillary Buds ◽  
Axillary Bud ◽  
Rice Seedlings ◽  
Transcriptomic Data ◽  
Bud Growth ◽  
Axillary Bud Growth ◽  
Axillary Bud Outgrowth

Abstract Background: N is an important macronutrient required for plant development and significantly influences axillary bud outgrowth, which affects tillering and grain yields of rice. However, how different N concentrations affect axillary bud growth at the molecular and transcriptional levels remains unclear. Results: In this study, morphological changes in the axillary bud growth of rice seedlings under different N concentrations ranging from low to high levels were systematically observed. To investigate the expression of N-induced genes involved in axillary bud growth, we used RNA-seq technology to generate mRNA transcriptomic data from two tissue types, basal parts and axillary buds, of plants grown under six different N concentrations. In total, 10,221 and 12,180 DEGs induced by LN or HN supplies were identified in the basal parts and axillary buds, respectively, via comparisons to expression levels under NN level. Analysis of the coexpression modules from the DEGs of the basal parts and axillary buds revealed an abundance of related biological processes underlying the axillary bud growth of plants under N treatments. Among these processes, the activity of cell division and expansion was positively correlated with the growth rate of axillary buds of plants grown under different N supplies. Additionally, TFs and phytohormones were shown to play crucial roles in determining the axillary bud growth of plants grown under different N concentrations. Further validation of OsGS1;2 and OsGS2 , the rice mutants of which presented altered tiller numbers, validated our transcriptomic data. Conclusion: These results indicate that different N concentrations affect the axillary bud growth rate, and our study revealed comprehensive expression profiles of genes that respond to different N concentrations, providing an important resource for future studies attempting to determine how axillary bud growth is controlled by different N supplies.

scholarly journals Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

2019 ◽  
Author(s):  
Rongna Wang ◽  
Junjie Qian ◽  
Zhongming Fang ◽  
Jihua Tang
Keyword(s):  
Growth Rate ◽  
Morphological Changes ◽  
Expression Profiles ◽  
Axillary Buds ◽  
Axillary Bud ◽  
Rice Seedlings ◽  
Transcriptomic Data ◽  
Bud Growth ◽  
Axillary Bud Growth ◽  
Axillary Bud Outgrowth

Abstract Background: N is an important macronutrient required for plant development and significantly influences axillary bud outgrowth, which affects tillering and grain yields of rice. However, how different N concentrations affect axillary bud growth at the molecular and transcriptional levels remains unclear. Results: In this study, morphological changes in the axillary bud growth of rice seedlings under different N concentrations ranging from low to high levels were systematically observed. To investigate the expression of N-induced genes involved in axillary bud growth, we used RNA-seq technology to generate mRNA transcriptomic data from two tissue types, basal parts and axillary buds, of plants grown under six different N concentrations. In total, 10,221 and 12,180 DEGs induced by LN or HN supplies were identified in the basal parts and axillary buds, respectively, via comparisons to expression levels under NN level. Analysis of the coexpression modules from the DEGs of the basal parts and axillary buds revealed an abundance of related biological processes underlying the axillary bud growth of plants under N treatments. Among these processes, the activity of cell division and expansion was positively correlated with the growth rate of axillary buds of plants grown under different N supplies. Additionally, TFs and phytohormones were shown to play crucial roles in determining the axillary bud growth of plants grown under different N concentrations. Further validation of OsGS1;2 and OsGS2 , the rice mutants of which presented altered tiller numbers, validated our transcriptomic data. Conclusion: These results indicate that different N concentrations affect the axillary bud growth rate, and our study revealed comprehensive expression profiles of genes that respond to different N concentrations, providing an important resource for future studies attempting to determine how axillary bud growth is controlled by different N supplies.

scholarly journals Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

2020 ◽  
Author(s):  
Rongna Wang ◽  
Junjie Qian ◽  
Zhongming Fang ◽  
Jihua Tang
Keyword(s):  
Growth Rate ◽  
Morphological Changes ◽  
Expression Profiles ◽  
Axillary Buds ◽  
Axillary Bud ◽  
Rice Seedlings ◽  
Transcriptomic Data ◽  
Bud Growth ◽  
Axillary Bud Growth ◽  
Axillary Bud Outgrowth

Abstract Background: N is an important macronutrient required for plant development and significantly influences axillary bud outgrowth, which affects tillering and grain yields of rice. However, how different N concentrations affect axillary bud growth at the molecular and transcriptional levels remains unclear. Results: In this study, morphological changes in the axillary bud growth of rice seedlings under different N concentrations ranging from low to high levels were systematically observed. To investigate the expression of N-induced genes involved in axillary bud growth, we used RNA-seq technology to generate mRNA transcriptomic data from two tissue types, basal parts and axillary buds, of plants grown under six different N concentrations. In total, 10,221 and 12,180 DEGs induced by LN or HN supplies were identified in the basal parts and axillary buds, respectively, via comparisons to expression levels under NN level. Analysis of the coexpression modules from the DEGs of the basal parts and axillary buds revealed an abundance of related biological processes underlying the axillary bud growth of plants under N treatments. Among these processes, the activity of cell division and expansion was positively correlated with the growth rate of axillary buds of plants grown under different N supplies. Additionally, TFs and phytohormones were shown to play crucial roles in determining the axillary bud growth of plants grown under different N concentrations. Further validation of OsGS1;2 and OsGS2 , the rice mutants of which presented altered tiller numbers, validated our transcriptomic data. Conclusion: These results indicate that different N concentrations affect the axillary bud growth rate, and our study revealed comprehensive expression profiles of genes that respond to different N concentrations, providing an important resource for future studies attempting to determine how axillary bud growth is controlled by different N supplies.

scholarly journals Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

2020 ◽  
Author(s):  
Rongna Wang ◽  
Junjie Qian ◽  
Zhongming Fang ◽  
Jihua Tang
Keyword(s):  
Growth Rate ◽  
Morphological Changes ◽  
Expression Profiles ◽  
Axillary Buds ◽  
Axillary Bud ◽  
Rice Seedlings ◽  
Transcriptomic Data ◽  
Bud Growth ◽  
Axillary Bud Growth ◽  
Axillary Bud Outgrowth

Abstract Background: N is an important macronutrient required for plant development and significantly influences axillary bud outgrowth, which affects tillering and grain yields of rice. However, how different N concentrations affect axillary bud growth at the molecular and transcriptional levels remains unclear. Results: In this study, morphological changes in the axillary bud growth of rice seedlings under different N concentrations ranging from low to high levels were systematically observed. To investigate the expression of N-induced genes involved in axillary bud growth, we used RNA-seq technology to generate mRNA transcriptomic data from two tissue types, basal parts and axillary buds, of plants grown under six different N concentrations. In total, 10,221 and 12,180 DEGs induced by LN or HN supplies were identified in the basal parts and axillary buds, respectively, via comparisons to expression levels under NN level. Analysis of the coexpression modules from the DEGs of the basal parts and axillary buds revealed an abundance of related biological processes underlying the axillary bud growth of plants under N treatments. Among these processes, the activity of cell division and expansion was positively correlated with the growth rate of axillary buds of plants grown under different N supplies. Additionally, TFs and phytohormones were shown to play crucial roles in determining the axillary bud growth of plants grown under different N concentrations. Further validation of OsGS1;2 and OsGS2 , the rice mutants of which presented altered tiller numbers, validated our transcriptomic data. Conclusion: These results indicate that different N concentrations affect the axillary bud growth rate, and our study revealed comprehensive expression profiles of genes that respond to different N concentrations, providing an important resource for future studies attempting to determine how axillary bud growth is controlled by different N supplies.

scholarly journals Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars

2018 ◽  
Vol 9 ◽  
Author(s):  
Danilo A. Ferreira ◽  
Marina C. M. Martins ◽  
Adriana Cheavegatti-Gianotto ◽  
Monalisa S. Carneiro ◽  
Rodrigo R. Amadeu ◽  
...  
Keyword(s):  
Axillary Bud ◽  
Metabolite Profiles ◽  
Commercial Cultivars ◽  
The Relationship ◽  
Axillary Bud Outgrowth

Apoplastic H 2 O 2 plays a critical role in axillary bud outgrowth by altering auxin and cytokinin homeostasis in tomato plants

2016 ◽  
Vol 211 (4) ◽  
pp. 1266-1278 ◽  
Author(s):  
Xiao‐Juan Chen ◽  
Xiao‐Jian Xia ◽  
Xie Guo ◽  
Yan‐Hong Zhou ◽  
Kai Shi ◽  
...  
Keyword(s):  
Critical Role ◽  
Axillary Bud ◽  
Tomato Plants ◽  
Axillary Bud Outgrowth

Effect of light quality (red: far-red ratio) and defoliation treatments applied at a single phytomer on axillary bud outgrowth in Trifolium repens L.

Oecologia ◽  
1994 ◽  
Vol 100 (3) ◽  
pp. 236-242 ◽  
Author(s):  
Ch. Robin ◽  
M. J. M. Hay ◽  
P. C. D. Newton
Keyword(s):  
Trifolium Repens ◽  
Light Quality ◽  
Axillary Bud ◽  
Trifolium Repens L ◽  
Axillary Bud Outgrowth ◽  
Effect Of Light

scholarly journals HORMONAL AND GENETIC REGULATION OF AXILLARY BUD OUTGROWTH IN CHRYSANTHEMUM MORIFOLIUM DURING FLORAL INITIATION

2015 ◽  
pp. 179-185
Author(s):  
R. Dierck ◽  
E. De Keyser ◽  
J. De Riek ◽  
E. Dhooghe ◽  
J. Van Huylenbroeck ◽  
...  
Keyword(s):  
Genetic Regulation ◽  
Chrysanthemum Morifolium ◽  
Axillary Bud ◽  
Floral Initiation ◽  
Axillary Bud Outgrowth

scholarly journals Ascorbate glutathione-dependent H2O2 scavenging is an important process in axillary bud outgrowth in rosebush

2020 ◽  
Vol 126 (6) ◽  
pp. 1049-1062
Author(s):  
Alexis Porcher ◽  
Vincent Guérin ◽  
Françoise Montrichard ◽  
Anita Lebrec ◽  
Jérémy Lothier ◽  
...  
Keyword(s):  
Hydrogen Peroxide ◽  
Marker Gene ◽  
Buthionine Sulfoximine ◽  
Direct Consequence ◽  
Axillary Bud ◽  
Transcriptional Level ◽  
Quiescent State ◽  
Synthesis Inhibitor ◽  
Axillary Bud Outgrowth

Abstract Background and Aims Branching is an important mechanism of plant shape establishment and the direct consequence of axillary bud outgrowth. Recently, hydrogen peroxide (H2O2) metabolism, known to be involved in plant growth and development, has been proposed to contribute to axillary bud outgrowth. However, the involvement of H2O2 in this process remains unclear. Methods We analysed the content of H2O2 during bud outgrowth and characterized its catabolism, both at the transcriptional level and in terms of its enzymatic activities, using RT–qPCR and spectrophotometric methods, respectively. In addition, we used in vitro culture to characterize the effects of H2O2 application and the reduced glutathione (GSH) synthesis inhibitor l-buthionine sulfoximine (BSO) on bud outgrowth in relation to known molecular markers involved in this process. Key Results Quiescent buds displayed a high content of H2O2 that declined when bud outgrowth was initiated, as the consequence of an increase in the scavenging activity that is associated with glutathione pathways (ascorbate–glutathione cycle and glutathione biosynthesis); catalase did not appear to be implicated. Modification of bud redox state after the application of H2O2 or BSO prevented axillary bud outgrowth by repressing organogenesis and newly formed axis elongation. Hydrogen peroxide also repressed bud outgrowth-associated marker gene expression. Conclusions These results show that high levels of H2O2 in buds that are in a quiescent state prevents bud outgrowth. Induction of ascorbate–glutathione pathway scavenging activities results in a strong decrease in H2O2 content in buds, which finally allows bud outgrowth.

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