scholarly journals An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK

BMC Medicine ◽  
2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Paolo Fraccaro ◽  
Sabine van der Veer ◽  
Benjamin Brown ◽  
Mattia Prosperi ◽  
Donal O’Donoghue ◽  
...  
Author(s):  
Laxmi Kumari Pathak ◽  
Pooja Jha

Chronic kidney disease (CKD) is a disorder in which the kidneys are weakened and become unable to filter blood. It lowers the human ability to remain healthy. The field of biosciences has progressed and produced vast volumes of knowledge from electronic health records. Heart disorders, anemia, bone diseases, elevated potassium, and calcium are the very prevalent complications that arise from kidney failure. Early identification of CKD can improve the quality of life greatly. To achieve this, various machine learning techniques have been introduced so far that use the data in electronic health record (EHR) to predict CKD. This chapter studies various machine learning algorithms like support vector machine, random forest, probabilistic neural network, Apriori, ZeroR, OneR, naive Bayes, J48, IBk (k-nearest neighbor), ensemble method, etc. and compares their accuracy. The study aims in finding the best-suited technique from different methods of machine learning for the early detection of CKD by which medical professionals can interpret model predictions easily.


Author(s):  
Duc Thanh Anh Luong ◽  
Dinh Tran ◽  
Wilson D Pace ◽  
Miriam Dickinson ◽  
Joseph Vassalotti ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Su H. Chu ◽  
Emily S. Wan ◽  
Michael H. Cho ◽  
Sergey Goryachev ◽  
Vivian Gainer ◽  
...  

AbstractElectronic health records (EHR) provide an unprecedented opportunity to conduct large, cost-efficient, population-based studies. However, the studies of heterogeneous diseases, such as chronic obstructive pulmonary disease (COPD), often require labor-intensive clinical review and testing, limiting widespread use of these important resources. To develop a generalizable and efficient method for accurate identification of large COPD cohorts in EHRs, a COPD datamart was developed from 3420 participants meeting inclusion criteria in the Mass General Brigham Biobank. Training and test sets were selected and labeled with gold-standard COPD classifications obtained from chart review by pulmonologists. Multiple classes of algorithms were built utilizing both structured (e.g. ICD codes) and unstructured (e.g. medical notes) data via elastic net regression. Models explicitly including and excluding spirometry features were compared. External validation of the final algorithm was conducted in an independent biobank with a different EHR system. The final COPD classification model demonstrated excellent positive predictive value (PPV; 91.7%), sensitivity (71.7%), and specificity (94.4%). This algorithm performed well not only within the MGBB, but also demonstrated similar or improved classification performance in an independent biobank (PPV 93.5%, sensitivity 61.4%, specificity 90%). Ancillary comparisons showed that the classification model built including a binary feature for FEV1/FVC produced substantially higher sensitivity than those excluding. This study fills a gap in COPD research involving population-based EHRs, providing an important resource for the rapid, automated classification of COPD cases that is both cost-efficient and requires minimal information from unstructured medical records.


Author(s):  
Duc Thanh Anh Luong ◽  
Dinh Tran ◽  
Wilson D. Pace ◽  
Miriam Dickinson ◽  
Joseph Vassalotti ◽  
...  

2013 ◽  
Vol 79 (03) ◽  
pp. 175-183 ◽  
Author(s):  
Sankar D. Navaneethan ◽  
Stacey E. Jolly ◽  
John Sharp ◽  
Anil Jain ◽  
Jesse D. Schold ◽  
...  

2020 ◽  
Author(s):  
Lin Yang ◽  
Tsun Kit Chu ◽  
Jinxiao Lian ◽  
Cheuk Wai Lo ◽  
Shi Zhao ◽  
...  

AbstractObjectivesThis study is aimed to develop and validate a prediction model for multi-state transitions across different stages of chronic kidney disease in patients with type 2 diabetes mellitus under primary care.SettingWe retrieved the anonymized electronic health records of a population based retrospective cohort in Hong Kong.ParticipantsA total of 26,197 patients were included in the analysis.Primary and secondary outcome measuresThe new-onset, progression, and regression of chronic kidney disease were defined by the transitions of four stages that were classified by combining glomerular filtration rate and urine albumin-to-creatinine ratio. We applied a multi-scale multi-state Poisson regression model to estimate the rates of the stage transitions by integrating the baseline demographic characteristics, routine laboratory test results and clinical data from electronic health records.ResultsDuring the mean follow-up time of 1.7 years, there were 2,935 patients newly diagnosed with chronic kidney disease, 1,443 progressed to the next stage and 1,971 regressed into an earlier stage. The models achieved the best performance in predicting the new-onset and progression with the predictors of sex, age, body mass index, systolic blood pressure, diastolic blood pressure, serum creatinine, HbA1c, total cholesterol, LDL, HDL, triglycerides and drug prescriptions.ConclusionsThis study demonstrated that individual risks of new-onset and progression of chronic kidney disease can be predicted from the routine physical and laboratory test results. The individualized prediction curves developed from this study could potentially be applied to routine clinical practices, to facilitate clinical decision making, risk communications with patients and early interventions.Article summaryStrengths of this studyEarly predictions for chronic kidney disease progression and timely intervention is critical for clinical management of patients with diabetes.We successfully developed a multi-scale multi-state Poisson regression models that achieved the satisfactory performance in predicting the new-onset and progression of chronic kidney diseases.The model incorporates the predictors of demographic characteristics, routine laboratory test results and clinical data from electronic health records.The individualized prediction curves could potentially be applied to facilitate clinical decision making, risk communications with patients and early interventions of CKD progression.Limitations of this studyThe cohort has a relatively short follow-up period and the retrospective study design might suffer from report bias and selection bias.


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