scholarly journals Erratum to: Development of a circulation direct sampling and monitoring system for O2 and CO2 concentrations in the gas–liquid phases of shake‑flask systems during microbial cell culture

AMB Express ◽  
2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Masato Takahashi ◽  
Yoshisuke Sawada ◽  
Hideki Aoyagi
mBio ◽  
2013 ◽  
Vol 4 (4) ◽  
Author(s):  
Anand Srinivasan ◽  
Kai P. Leung ◽  
Jose L. Lopez-Ribot ◽  
Anand K. Ramasubramanian

ABSTRACT Micro- and nanoscale technologies have radically transformed biological research from genomics to tissue engineering, with the relative exception of microbial cell culture, which is still largely performed in microtiter plates and petri dishes. Here, we present nanoscale culture of the opportunistic fungal pathogen Candida albicans on a microarray platform. The microarray consists of 1,200 individual cultures of 30 nl of C. albicans biofilms (“nano-biofilms”) encapsulated in an inert alginate matrix. We demonstrate that these nano-biofilms are similar to conventional macroscopic biofilms in their morphological, architectural, growth, and phenotypic characteristics. We also demonstrate that the nano-biofilm microarray is a robust and efficient tool for accelerating the drug discovery process: (i) combinatorial screening against a collection of 28 antifungal compounds in the presence of immunosuppressant FK506 (tacrolimus) identified six drugs that showed synergistic antifungal activity, and (ii) screening against the NCI challenge set small-molecule library identified three heretofore-unknown hits. This cell-based microarray platform allows for miniaturization of microbial cell culture and is fully compatible with other high-throughput screening technologies. IMPORTANCE Microorganisms are typically still grown in petri dishes, test tubes, and Erlenmeyer flasks in spite of the latest advances in miniaturization that have benefitted other allied research fields, including genomics and proteomics. Culturing microorganisms in small scale can be particularly valuable in cutting down time, cost, and reagent usage. This paper describes the development, characterization, and application of nanoscale culture of an opportunistic fungal pathogen, Candida albicans. Despite a more than 2,000-fold reduction in volume, the growth characteristics and drug response profiles obtained from the nanoscale cultures were comparable to the industry standards. The platform also enabled rapid identification of new drug candidates that were effective against C. albicans biofilms, which are a major cause of mortality in hospital-acquired infections.


2004 ◽  
Vol 1045 (1-2) ◽  
pp. 93-98 ◽  
Author(s):  
Maria B Dainiak ◽  
Ashok Kumar ◽  
Fatima M Plieva ◽  
Igor Yu Galaev ◽  
Bo Mattiasson

2007 ◽  
Vol 68 (1) ◽  
pp. 172-177 ◽  
Author(s):  
J. Ma ◽  
W.T. Qi ◽  
L.N. Yang ◽  
W.T. Yu ◽  
Y.B. Xie ◽  
...  
Keyword(s):  

1978 ◽  
Vol 18 (01) ◽  
pp. 20-26 ◽  
Author(s):  
Ralph Simon ◽  
A. Rosman ◽  
Erdinc Zana

February 1978 Original manuscript received in Society of Petroleum Engineers office Jan. 14, 1977. Paper accepted for publication Aug. 15, 1977. Revised manuscript received Sept. 21, 1977. Paper (SPE 6387) was presented at the SPE-AIME Permian Basin Oil and Gas Recovery Conference, held in Midland, Tex., March 10-11, 1977. Abstract This paper presents experimental phase behavior data on two CO2-reservoir oil systems at reservoir pressures and temperatures. pressures and temperatures. The data includepressure-composition diagrams with bubble points, dew points, and critical points;vapor-liquid equilibrium compositions and related K values;vapor and liquid densities compared with values calculated by the Redlich-Kwong equation of state;vapor and liquid viscosities compared with predictions by the Lobrenz-Bray-Clark correlation; andinterfacial tensions for six vapor-liquid mixtures compared with values calculated by the Weinaug-Katz parachor equation. These and other published data contribute to development of the generalized correlations needed by reservoir and production engineers for evaluating, designing, and efficiently operating CO2-injection projects. projects Introduction This paper presents experimental phase behavior data for two CO2-reservoir oil systems. These data are used in predicting the performance of CO2 floods with a compositional simulator. The simulator calculates vapor and liquid compositions, densities, viscosities, and interfacial tensions to describe the phase behavior as the injected CO2 advances through phase behavior as the injected CO2 advances through the reservoir. The simulator predictions are used to evaluate proposed projects and to design and efficiently operate approved ones. The data in this paper consist of pressure-composition diagrams with bubble points, pressure-composition diagrams with bubble points, dew points, and critical points; and compositions, densities, viscosities, and interfacial tensions of vapors and liquids in equilibrium in the two-phase region. These data were obtained by the experimental procedure shown in Fig. 1. procedure shown in Fig. 1. We have compared our measured data with values calculated by existing methods: Redlich-Kwong equation for densities, Lohrenz-Bray-Clark correlation for viscosities, and the Weinaug-Katz parachor equation for interfacial tension. We found parachor equation for interfacial tension. We found that these published methods give acceptable agreement in some areas, but in general, they are not satisfactory for engineering purposes. Therefore, we conclude that improved calculation methods are needed for CO2 systems. For the special case of compositional simulator applications, we devised a technique for obtaining satisfactory calculated density, viscosity, and interfacial tension values. This technique is discussed in the section on "Measurements vs Calculations." We believe that our data, along with previously published information and information yet to come, published information and information yet to come, will advance the development of satisfactory correlations, thus reducing the need for extensive laboratory studies of individual systems. PRESSURE-COMPOSITION DIAGRAMS PRESSURE-COMPOSITION DIAGRAMS OIL A Ten mixtures of CO2 and Reservoir Oil A were prepared. These mixtures contained CO2 concentrations prepared. These mixtures contained CO2 concentrations of 0, 20, 40, 55, 60, 65. 70, 75, 80, and 90 mol percent. At 130 degrees F, pressure traverses were made with each mixture. These traverses started in the single-phase region at a pressure above the bubble (or dew) points and lowered the pressure in discrete steps, passing from the single-phase into the two-phase region. At each step, the vapor and liquid volumes were measured. The results are described in Fig. 2A. At 130 degrees F, the critical point of the CO2-Reservoir Oil A system (where intensive properties of the gas and liquid phases were equal) properties of the gas and liquid phases were equal) is 2,570 psia and 60-mol percent CO2. OIL B Eight mixtures of CO2 and Reservoir Oil B also were prepared and studied in the visual cell at 255 degrees F. CO2 concentrations for these mixtures were 0, 20, 40, 55, 65, 75, 80, and 85 mol percent. The pressure was varied from 800 to 6,100 psia, and the pressure was varied from 800 to 6,100 psia, and the relative vapor and liquid volumes measured. The results are given in Fig. 2B. The critical point of the CO2-Reservoir Oil B system at 255 degrees F is 4,890 psia and 74-mol percent CO2. psia and 74-mol percent CO2. SPEJ P. 20


2018 ◽  
Vol 24 (3) ◽  
pp. 342-348
Author(s):  
Atsushi Shibai ◽  
Saburo Tsuru ◽  
Tetsuya Yomo

Ultraviolet (UV) mutagenesis is a widely used technique to increase bacterial mutation rates in laboratory experiments. UV mutagenesis requires fine regulation of UV dose, because the number of dead cells increases exponentially as the dose increases. Ignoring this hazard can cause extinction of UV-exposed populations. Therefore, an automated system that cooperatively conducts both growth measurement and UV irradiation is needed for efficient UV mutagenesis experiments. To address this task, we constructed an automated UV irradiation device for microbial cell culture. This device can measure cell density and irradiate the bacterial cells with UV light automatically according to the state of cell growth. We demonstrated that this growth feedback control avoided extinction and enabled accumulation of mutations in bacterial genomes at a rapid rate for a long period. Whole-genome sequencing revealed the high accumulation rate, neutrality, and spectrum of UV-induced mutations. These characteristics were all consistent with those obtained by manual UV irradiation. These results indicate that our automated device is useful in accelerating mutation accumulation over a long duration.


Sign in / Sign up

Export Citation Format

Share Document