Structural Mapping of Membrane-Associated Proteins: A Case Study of The IgE-Receptor Complex

2018 ◽  
pp. 93-116
Author(s):  
Barbara Baird ◽  
David Holowka
Molecules ◽  
2021 ◽  
Vol 26 (5) ◽  
pp. 1301
Author(s):  
Giacomo Picci ◽  
Jessica Milia ◽  
Maria Carla Aragoni ◽  
Massimiliano Arca ◽  
Simon J. Coles ◽  
...  

The new symmetric acyclic N,N’-bis(1-pyrenyl) squaramide (H2L) functionalized with the pyrene moiety as a fluorogenic fragment has been designed and its ability to selectively detect specific anions and metals investigated. H2L selectively binds Cl− both in solution (DMSO 0.5% H2O and MeCN) and in the solid state, and allows to selectively detect Cu2+ in MeCN with the formation of a 2:1 metal-receptor complex, with a green intense emission appreciable by naked eye under the UV lamp. The H2L copper complex preserves its emission properties in the presence of Cl−. The addition of basic anions (OH−, CN−, and F−) up to 10 equivalents caused the deprotonation of the squaramide NHs and a dramatic change of the emission properties of the H2L copper complex.


2021 ◽  
Author(s):  
Fhatuwani Sengani ◽  
Mulenga Francois

Abstract The purpose of the study was to perform rockfall stability analysis and develop an improved rockfall hazard matrix chart using the R518 road in Limpopo as the case study. The study entailed structural mapping, wedge simulation using stereonet plots. The RocFall software was then used to identify the parameters that influence the occurrence of rockfall. The software was also used to monitor the variations in the kinetic energy of rolling, bouncing or falling rocks. The effects of the initial height and velocity of falling rocks on the final destination of fragments were also explored. Results showed that the selected area along the R518 road consists of joints and bedding planes. These features weaken the rock mass and create wedges that can potentially fall. Simulations with RocFall, on the other hand, indicated that slope height, vegetation density, slope angle, the velocity of the falling rock largely contribute to the extent that the broken rock could reach. From the empirical and numerical findings, an improved rockfall hazard rating chart was proposed. The chart was found to be suitable for the rating of level of rockfall hazard along highways and roads.


2018 ◽  
Vol 49 (3) ◽  
pp. 345-362 ◽  
Author(s):  
Nomqhele Z. Nkosi ◽  
Musa S. D. Manzi ◽  
Oleg Brovko ◽  
Raymond J. Durrheim

Author(s):  
Shafi Ullah Khan ◽  
Nafees Ahemad ◽  
Lay-Hong Chuah ◽  
Rakesh Naidu ◽  
Thet Thet Htar

Molecular docking is one of the most frequently used technique in structure-based drug design. Molecular docking can predict the binding-conformation and interactions of small molecule to the appropriate binding site within the target protein. This tutorial aimed to design a step by step protocol to get the basic insight into the molecular docking calculations employing very simple and easy to follow procedure


2022 ◽  
Vol 23 (2) ◽  
pp. 788
Author(s):  
Greer K. Arthur ◽  
Glenn Cruse

Mast cells are tissue-resident immune cells that function in both innate and adaptive immunity through the release of both preformed granule-stored mediators, and newly generated proinflammatory mediators that contribute to the generation of both the early and late phases of the allergic inflammatory response. Although mast cells can be activated by a vast array of mediators to contribute to homeostasis and pathophysiology in diverse settings and contexts, in this review, we will focus on the canonical setting of IgE-mediated activation and allergic inflammation. IgE-dependent activation of mast cells occurs through the high affinity IgE receptor, FcεRI, which is a multimeric receptor complex that, once crosslinked by antigen, triggers a cascade of signaling to generate a robust response in mast cells. Here, we discuss FcεRI structure and function, and describe established and emerging roles of the β subunit of FcεRI (FcεRIβ) in regulating mast cell function and FcεRI trafficking and signaling. We discuss current approaches to target IgE and FcεRI signaling and emerging approaches that could target FcεRIβ specifically. We examine how alternative splicing of FcεRIβ alters protein function and how manipulation of splicing could be employed as a therapeutic approach. Targeting FcεRI directly and/or IgE binding to FcεRI are promising approaches to therapeutics for allergic inflammation. The characteristic role of FcεRIβ in both trafficking and signaling of the FcεRI receptor complex, the specificity to IgE-mediated activation pathways, and the preferential expression in mast cells and basophils, makes FcεRIβ an excellent, but challenging, candidate for therapeutic strategies in allergy and asthma, if targeting can be realized.


2008 ◽  
Author(s):  
J R Harris ◽  
M Sanborn-Barrie ◽  
M St-Onge ◽  
M Pilkington ◽  
T Lynds ◽  
...  

2018 ◽  
Author(s):  
Wentao Zhao ◽  
Desheng Sun ◽  
Tingting Zhang ◽  
Yu Lin ◽  
Yaonan Li

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