scholarly journals Identification of stripe rust (Puccinia striiformis) resistant genes among Pakistani spring wheat by using molecular markers

2017 ◽  
Vol 11 (4) ◽  
pp. 320-334 ◽  
Keyword(s):  
Molecular Markers ◽  
Stripe Rust ◽  
Spring Wheat ◽  
Puccinia Striiformis ◽  
Resistant Genes

scholarly journals Genome-Wide Association Mapping of Loci for Resistance to Stripe Rust in North American Elite Spring Wheat Germplasm

2018 ◽  
Vol 108 (2) ◽  
pp. 234-245 ◽  
Author(s):  
Jayfred Gaham Godoy ◽  
Sheri Rynearson ◽  
Xianming Chen ◽  
Michael Pumphrey
Keyword(s):  
Stripe Rust ◽  
Spring Wheat ◽  
Puccinia Striiformis ◽  
Single Nucleotide Polymorphism Array ◽  
Infection Type ◽  
Genome Wide Association ◽  
Adult Plant ◽  
Wheat Germplasm ◽  
Genome Wide ◽  
A Genome

Stripe rust, caused by Puccinia striiformis f. sp. tritici, is a major yield-limiting foliar disease of wheat (Triticum aestivum) worldwide. In this study, the genetic variability of elite spring wheat germplasm from North America was investigated to characterize the genetic basis of effective all-stage and adult plant resistance (APR) to stripe rust. A genome-wide association study was conducted using 237 elite spring wheat lines genotyped with an Illumina Infinium 90K single-nucleotide polymorphism array. All-stage resistance was evaluated at seedling stage in controlled conditions and field evaluations were conducted under natural disease pressure in eight environments across Washington State. High heritability estimates and correlations between infection type and severity were observed. Ten loci for race-specific all-stage resistance were confirmed from previous mapping studies. Three potentially new loci associated with race-specific all-stage resistance were identified on chromosomes 1D, 2A, and 5A. For APR, 11 highly significant quantitative trait loci (QTL) (false discovery rate < 0.01) were identified, of which 3 QTL on chromosomes 3A, 5D, and 7A are reported for the first time. The QTL identified in this study can be used to enrich the current gene pool and improve the diversity of resistance to stripe rust disease.

High-temperature adult-plant resistance to stripe rust in facultative winter wheat

2016 ◽  
Vol 67 (10) ◽  
pp. 1064 ◽  
Author(s):  
Beyhan Akin ◽  
Xian Ming Chen ◽  
Alex Morgunov ◽  
Nusret Zencirci ◽  
Anmin Wan ◽  
...  
Keyword(s):  
Molecular Markers ◽  
High Temperature ◽  
Winter Wheat ◽  
Stripe Rust ◽  
Field Experiments ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Stripe Rust Resistance ◽  
Adult Plant ◽  
Improvement Program

Stripe (yellow) rust, caused by Puccinia striiformis Westend. f. sp. tritici Erikss., is one of the most damaging diseases in wheat and is especially damaging for winter and facultative wheat. The objective of this study was to understand stripe rust resistance in 100 wheat and facultative wheat entries from the International Winter Wheat Improvement Program by conducting experiments in a greenhouse and in four field environments in Washington State, USA, and by genotyping molecular markers linked to Yr genes. Percentages of entries resistant to the rust races at the seedling stage were: PST-17, 44%; PST-37, 32%; PST-43, 45%; PST-45, 49%; PST-116, 18%; PST-100, 17%; and PST-127, 8%. Molecular markers were positive for genes Yr9, Yr17, and Yr18 and negative for Yr5, Yr10, and Yr15. Yr18 was present in 44 entries (44%). By using the highly virulent races PST-127 and PST-100 under controlled conditions, 16 entries were shown to have high-temperature adult-plant (HTAP) resistance and resistant–moderately resistant field reactions at all four field sites. Resistant entries, especially those with HTAP resistance, were also identified in the field experiments.

Development of resistance gene analog polymorphism markers for the Yr9 gene resistance to wheat stripe rust

Genome ◽  
2001 ◽  
Vol 44 (4) ◽  
pp. 509-516 ◽  
Author(s):  
Z X Shi ◽  
X M Chen ◽  
R F Line ◽  
H Leung ◽  
C R Wellings
Keyword(s):  
Molecular Markers ◽  
Resistance Gene ◽  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Resistance Gene Analog ◽  
Stripe Rust Resistance ◽  
Isogenic Line ◽  
Wheat Cultivars ◽  
Development Of Resistance ◽  
Rye Translocations

The Yr9 gene, which confers resistance to stripe rust caused by Puccinia striiformis f.sp. tritici (P. s. tritici) and originated from rye, is present in many wheat cultivars. To develop molecular markers for Yr9, a Yr9 near-isogenic line, near-isogenic lines with nine other Yr genes, and the recurrent wheat parent 'Avocet Susceptible' were evaluated for resistance in the seedling stage to North American P. s. tritici races under controlled temperature in the greenhouse. The resistance gene analog polymorphism (RGAP) technique was used to identify molecular markers for Yr9. The BC7:F2 and BC7:F3 progeny, which were developed by backcrossing the Yr9 donor wheat cultivar Clement with 'Avocet Susceptible', were evaluated for resistance to stripe rust races. Genomic DNA was extracted from 203 BC7:F2 plants and used for cosegregation analysis. Of 16 RGAP markers confirmed by cosegregation analysis, 4 were coincident with Yr9 and 12 were closely linked to Yr9 with a genetic distance ranging from 1 to 18 cM. Analyses of nulli-tetrasomic 'Chinese Spring' lines with the codominant RGAP marker Xwgp13 confirmed that the markers and Yr9 were located on chromosome 1B. Six wheat cultivars reported to have 1B/1R wheat-rye translocations and, presumably, Yr9, and two rye cultivars were inoculated with four races of P. s. tritici and tested with 9 of the 16 RGAP markers. Results of these tests indicate that 'Clement', 'Aurora', 'Lovrin 10', 'Lovrin 13', and 'Riebesel 47/51' have Yr9 and that 'Weique' does not have Yr9. The genetic information and molecular markers obtained from this study should be useful in cloning Yr9, in identifying germplasm that may have Yr9, and in using marker-assisted selection for combining Yr9 with other stripe rust resistance genes.Key words: molecular markers, Puccinia striiformis f.sp. tritici, resistance gene analog polymorphism, Triticum aestivum.

Management of Leaf Rust and Stripe Rust in Hard Red Spring Wheat at Different Timings of Disease Onset

2020 ◽  
Vol 21 (4) ◽  
pp. 306-311
Author(s):  
Bryn Evin ◽  
Scott Meyer ◽  
Casey Schuh ◽  
Sam Haugen ◽  
Jessica Halvorson ◽  
...  
Keyword(s):  
Leaf Rust ◽  
Stripe Rust ◽  
Spring Wheat ◽  
Host Resistance ◽  
Field Experiments ◽  
Puccinia Striiformis ◽  
Disease Onset ◽  
Puccinia Triticina ◽  
Hard Red Spring Wheat ◽  
Fungicide Application

Stripe rust (Puccinia striiformis f. sp. tritici) and leaf rust (Puccinia triticina) can cause significant yield reductions to hard red spring wheat (HRSW) in North Dakota (ND). The use of host resistance and fungicides can successfully manage this disease. However, the combination of them may not be appropriate every year. From 2016 to 2018, fungicide timing by cultivar experiments were conducted to update recommendations for rust management. Experiments were designed in a randomized complete block with a split-plot arrangement. Main plots included three HRSW cultivars that were moderately resistant, moderately susceptible, and susceptible. Subplots included the fungicide timings of Feekes 9, Feekes 10.5.1, a sequential application, and a nontreated control. Field experiments were categorized into three environments depending on rust onset and disease progress. When rust was detected at early heading, the susceptible cultivar benefited from all fungicide application timings. The detection of rust at tillering leaf stages suggested that fungicide treatments statistically lowered disease and in most cases had statistically higher yield, regardless of host resistance. These results suggest that the benefit from a fungicide application to manage leaf rust and stripe rust is highly influenced by the timing of disease onset and level of host resistance. Results will improve fungicide suggestions for HRSW producers in ND.

scholarly journals Development of Race-Specific SCAR Markers for Detection of Chinese Races CYR32 and CYR33 of Puccinia striiformis f. sp. tritici

Plant Disease ◽  
2010 ◽  
Vol 94 (2) ◽  
pp. 221-228 ◽  
Author(s):  
Baotong Wang ◽  
Xiaoping Hu ◽  
Qiang Li ◽  
Baojun Hao ◽  
Bo Zhang ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Stripe Rust ◽  
Genomic Dna ◽  
Puccinia Striiformis ◽  
Random Amplified Polymorphic Dna ◽  
Scar Markers ◽  
Wheat Stripe Rust ◽  
Wheat Genotypes ◽  
Sequence Characterized Amplified Region ◽  
Wheat Leaves

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici, is a devastating disease in China. Races CYR32 and CYR33 have been predominant in the recent P. striiformis f. sp. tritici population. To develop molecular markers for these races, initially 86 isolates, most of which were collected in 2007 throughout China, were tested on the set of wheat genotypes for differentiating Chinese P. striiformis f. sp. tritici races, and their genomic DNA were amplified with 94 random amplified polymorphic DNA (RAPD) primers. Twelve isolates were identified as CYR33, 14 as CYR32, and 60 as 13 other races. A 320-bp band was identified to be associated with CYR32 with primer S1271 (5′-CTTCTCGGTC-3′), and a 550-bp band was identified to be specific to CYR33 with primer S1304 (5′-AGGAGCGACA-3′). The two bands were cloned and sequenced. Based on the sequences, sequence characterized amplified region (SCAR) markers CYR32sp1/sp2 and CYR33sp1/sp2 were developed to differentiate CYR32 and CYR33, respectively, from other races. The SCAR markers were validated with DNA samples from wheat leaves inoculated with selected isolates from the 86 isolates and urediniospore DNA samples from an additional 63 isolates collected from 2006 to 2009. The detection of CYR32 and CYR33 with the SCAR markers was completely consistent with the results of the race identification with the set of differential wheat genotypes. Thus, the markers are highly reliable for identification of the two races.

scholarly journals Loci associated with resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a core collection of spring wheat (Triticum aestivum)

PLoS ONE ◽  
2017 ◽  
Vol 12 (6) ◽  
pp. e0179087 ◽  
Author(s):  
Kebede T. Muleta ◽  
Peter Bulli ◽  
Sheri Rynearson ◽  
Xianming Chen ◽  
Michael Pumphrey
Keyword(s):  
Triticum Aestivum ◽  
Stripe Rust ◽  
Spring Wheat ◽  
Core Collection ◽  
Puccinia Striiformis

Identification of stripe rust resistant genes in resistant synthetic hexaploid wheat accessions using linked markers

2015 ◽  
Vol 14 (3) ◽  
pp. 219-225 ◽  
Author(s):  
Sumaira Farrakh ◽  
Sumbul Khalid ◽  
Ayesha Rafique ◽  
Naveeda Riaz ◽  
Abdul Mujeeb-Kazi
Keyword(s):  
Genetic Diversity ◽  
Stripe Rust ◽  
Hexaploid Wheat ◽  
Puccinia Striiformis ◽  
Polymorphic Information Content ◽  
Synthetic Hexaploid Wheat ◽  
Resistant Genes ◽  
Plant Stage ◽  
Breeding Programmes ◽  
Synthetic Hexaploid

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most important diseases affecting wheat. In this study, seven gene-linked markers were used to identify the presence of stripe rust resistant genes in 51 accessions of synthetic hexaploid of wheat which were found to be resistant at seedling plant stage. Molecular marker-based gene identification showed the presence of Yr5, Yr10 and Yr15 in three accessions, Yr36 in three accessions, Yr48 in seven accessions, YrR61 in four accessions, and YrTP1 in ten accessions of resistant hexaploid of wheat. These gene-linked markers were also used for the detection of genetic diversity. A total of 68 alleles were detected by these seven gene-linked markers. The mean number of allele was 11.3 alleles per locus. Genetic diversity values ranged from 0.34 to 0.93, with highest genetic diversity value of 0.93 detected for marker Xwm477. The lowest genetic diversity value was observed for marker Xbarc167. The polymorphic information content value ranged from 0.33 to 0.92 with an average of 0.54. The highest number of alleles (n= 24) were detected for marker Xwmc477. The evidence in this study on the basis of genetic diversity and presence of Yr genes in synthetic hexaploid wheat accessions will be useful in further breeding programmes.

Stripe rust resistance among western Canadian spring wheat and triticale varieties

2012 ◽  
Vol 92 (4) ◽  
pp. 713-722 ◽  
Author(s):  
H. Randhawa ◽  
B. J. Puchalski ◽  
M. Frick ◽  
A. Goyal ◽  
T. Despins ◽  
...  
Keyword(s):  
Stripe Rust ◽  
Spring Wheat ◽  
Rust Resistance ◽  
Puccinia Striiformis ◽  
Stripe Rust Resistance ◽  
Adult Plant ◽  
Western Canada ◽  
Resistant Varieties ◽  
Plant Resistance Gene ◽  
Moderately Resistant

Randhawa, H., Puchalski, B. J., Frick, M., Goyal, A., Despins, T., Graf, R. J., Laroche, A. and Gaudet, D. A. 2012. Stripe rust resistance among western Canadian spring wheat and triticale varieties. Can. J. Plant Sci. 92: 713–722. Stripe rust (Puccinia striiformis Westend.) is an important pathogen of wheat in western Canada and worldwide. One hundred and four spring wheat and triticale varieties and cultivars were evaluated for resistance to stripe rust in nurseries at Lethbridge and Creston, BC, during 2009 and 2010. In the Canada Prairie Spring Red (CPSR) wheat class, newer varieties were more resistant compared with many of the older varieties. Among the white Canada Prairie Spring White (CPSW) wheats, Vista was moderately resistant, whereas Snowhite475 and Snowhite476 were susceptible. Little useful resistance was observed within the Canada Western Hard White Spring (CWHWS) class. Sixty percent of the Canada Western Red Spring (CWRS) wheats, including the currently popular varieties Lillian, Harvest and Kane, were resistant. Susceptible CWRS varieties that are extensively seeded in western Canada include AC Barrie, Superb and McKenzie, but also include the recently registered CDC Kernen and Vesper. The varieties were tested for the presence of the stripe rust genes Yr10, Yr17, Yr18 and Yr36 using molecular markers. Much of the stripe rust resistance, particularly in the CWRS, Canada Western Extra Strong (CWES), and CPSR wheat classes was attributed to the presence of adult plant resistance gene Yr18. Yr17 and Yr36 were also detected among CWRS and CWES varieties. However, the absence of markers for known genes in several resistant varieties indicated that uncharacterized genes for stripe rust occur among hexaploid wheats. Durum wheat and triticale varieties were universally resistant with the absence of tested markers. Therefore, there appear to be numerous sources of stripe rust resistance, both characterized and uncharacterized, among western Canadian spring wheat and triticale varieties.

scholarly journals Genome-Wide Mapping of Quantitative Trait Loci Conferring All-Stage and High-Temperature Adult-Plant Resistance to Stripe Rust in Spring Wheat Landrace PI 181410

2020 ◽  
Vol 21 (2) ◽  
pp. 478 ◽  
Author(s):  
Yan Liu ◽  
Yanmin Qie ◽  
Xing Li ◽  
Meinan Wang ◽  
Xianming Chen
Keyword(s):  
High Temperature ◽  
Quantitative Trait Loci ◽  
Stripe Rust ◽  
Spring Wheat ◽  
Quantitative Trait ◽  
Puccinia Striiformis ◽  
Stripe Rust Resistance ◽  
Adult Plant ◽  
Wheat Landrace ◽  
Trait Loci

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive diseases of wheat in the world. Genetic resistance is the best strategy for control of the disease. Spring wheat landrace PI 181410 has shown high level resistance to stripe rust. The present study characterized the landrace to have both race-specific all-stage resistance and nonrace-specific high-temperature adult-plant (HTAP) resistance. To map quantitative trait loci (QTL) for the resistance in PI 181410, it was crossed with Avocet S (AvS), from which a recombinant inbred line population was developed. The F5–F8 populations were consecutively phenotyped for stripe rust response in multiple field environments under natural Pst infection, and the F7 population was phenotyped in seedlings at low temperature and in adult-plant stage with selected Pst races in the greenhouse. The F7 population was genotyped using the 90K wheat SNP chip. Three QTL, QYrPI181410.wgp-4AS, QYrPI181410.wgp-4BL, and QYrPI181410.wgp-5BL.1, from PI 181410 for all-stage resistance, were mapped on chromosome arms 4AS, 4BL, and 5BL, respectively. Four QTL, QYrPI181410.wgp-1BL, QYrPI181410.wgp-4BL, QYrPI181410.wgp-5AS, and QYrPI181410.wgp-5BL.2, were identified from PI 181410 for HTAP resistance and mapped to 1BL, 4BL, 5AS, and 5BL, respectively. Two QTL with minor effects on stripe rust response were identified from AvS and mapped to 2BS and 2BL. Four of the QTL from PI 181410 and one from AvS were potentially new. As the 4BL QTL was most effective and likely a new gene for stripe rust resistance, three kompetitive allele specific PCR (KASP) markers were developed for incorporating this gene into new wheat cultivars.

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