scholarly journals R software package based statistical optimization of process components to simultaneously enhance the bacterial growth, laccase production and textile dye decolorization with cytotoxicity study

PLoS ONE ◽  
2018 ◽  
Vol 13 (5) ◽  
pp. e0195795 ◽  
Author(s):  
Sunil Bhavsar ◽  
Pravin Dudhagara ◽  
Shantilal Tank
2021 ◽  
Author(s):  
Qingqing Chen ◽  
Ate Poorthuis

Identifying meaningful locations, such as home or work, from human mobility data has become an increasingly common prerequisite for geographic research. Although location-based services (LBS) and other mobile technology have rapidly grown in recent years, it can be challenging to infer meaningful places from such data, which - compared to conventional datasets – can be devoid of context. Existing approaches are often developed ad-hoc and can lack transparency and reproducibility. To address this, we introduce an R software package for inferring home locations from LBS data. The package implements pre-existing algorithms and provides building blocks to make writing algorithmic ‘recipes’ more convenient. We evaluate this approach by analyzing a de-identified LBS dataset from Singapore that aims to balance ethics and privacy with the research goal of identifying meaningful locations. We show that ensemble approaches, combining multiple algorithms, can be especially valuable in this regard as the resulting patterns of inferred home locations closely correlate with the distribution of residential population. We hope this package, and others like it, will contribute to an increase in use and sharing of comparable algorithms, research code and data. This will increase transparency and reproducibility in mobility analyses and further the ongoing discourse around ethical big data research.


2018 ◽  
Vol 32 (3) ◽  
pp. e4205 ◽  
Author(s):  
Jaleh Pooralhossini ◽  
Mohammad Ali Zanjanchi ◽  
Mehrorang Ghaedi ◽  
Arash Asfaram ◽  
Mohammad Hossein Ahmadi Azqhandi

2007 ◽  
Vol 21 (3) ◽  
pp. 840-848 ◽  
Author(s):  
Stevan Z. Knezevic ◽  
Jens C. Streibig ◽  
Christian Ritz

2009 ◽  
Vol 6 (2) ◽  
pp. 4413-4439 ◽  
Author(s):  
J.-P. Gattuso ◽  
H. Lavigne

Abstract. Although future changes in the seawater carbonate chemistry are well constrained, their impact on marine organisms and ecosystems remains poorly known. The biological response to ocean acidification is a recent field of research as most purposeful experiments have only been carried out in the late 1990s. The potentially dire consequences of ocean acidification attract scientists and students with a limited knowledge of the carbonate chemistry and its experimental manipulation. Hence, some guidelines on carbonate chemistry manipulations may be helpful for the growing ocean acidification community to maintain comparability. Perturbation experiments are one of the key approaches used to investigate the biological response to elevated pCO2. They are based on measurements of physiological or metabolic processes in organisms and communities exposed to seawater with normal or altered carbonate chemistry. Seawater chemistry can be manipulated in different ways depending on the facilities available and on the question being addressed. The goal of this paper is (1) to examine the benefits and drawbacks of various manipulation techniques and (2) to describe a new version of the R software package seacarb which includes new functions aimed at assisting the design of ocean acidification perturbation experiments. Three approaches closely mimic the on-going and future changes in the seawater carbonate chemistry: gas bubbling, addition of high-CO2 seawater as well as combined additions of acid and bicarbonate and/or carbonate.


2013 ◽  
Vol 14 (3) ◽  
pp. 652-663 ◽  
Author(s):  
Elizabeth P. Derryberry ◽  
Graham E. Derryberry ◽  
James M. Maley ◽  
Robb T. Brumfield

2019 ◽  
Vol 41 (2) ◽  
pp. 250-257 ◽  
Author(s):  
Laércio Junio da Silva ◽  
André Dantas de Medeiros ◽  
Ariadne Morbeck Santos Oliveira

Abstract: The need to optimize seed quality assessment using new, more accessible, and modern computational resources has led to the emergence of new tools. In this paper, we introduce SeedCalc, a new R software package developed to process germination and seedling length data. The functions included in SeedCalc allow fast and efficient data processing, offering greater reliability to the variables generated and facilitating statistical analysis itself since the data are already processed with the appropriate structure to be statistically analyzed in the R software. SeedCalc is available free of charge at https://CRAN.R-project.org/package=SeedCalc.


Author(s):  
Ali Taha ◽  
Nada Al-Mudallal ◽  
Ghassaq Sadiq ◽  
Mohammed Abdullatif ◽  
Haider Glaiym ◽  
...  

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