scholarly journals Nutrient availability is a dominant predictor of soil bacterial and fungal community composition after nitrogen addition in subtropical acidic forests

PLoS ONE ◽  
2021 ◽  
Vol 16 (2) ◽  
pp. e0246263
Author(s):  
Juyan Cui ◽  
Xiaochun Yuan ◽  
Qiufang Zhang ◽  
Jiacong Zhou ◽  
Kaimiao Lin ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Community Composition ◽  
Fungal Community ◽  
Soil Microbial Community ◽  
N Addition ◽  
Subtropical Forests ◽  
Soil Microbial ◽  
Experimental Plots

Nutrient addition to forest ecosystems significantly influences belowground microbial diversity, community structure, and ecosystem functioning. Nitrogen (N) addition in forests is common in China, especially in the southeast region. However, the influence of N addition on belowground soil microbial community diversity in subtropical forests remains unclear. In May 2018, we randomly selected 12 experimental plots in a Pinus taiwanensis forest within the Daiyun Mountain Nature Reserve, Fujian Province, China, and subjected them to N addition treatments for one year. We investigated the responses of the soil microbial communities and identified the major elements that influenced microbial community composition in the experimental plots. The present study included three N treatments, i.e., the control (CT), low N addition (LN, 40 kg N ha-1 yr-1), and high N addition (HN, 80 kg N ha-1 yr-1), and two depths, 0−10 cm (topsoil) and 10−20 cm (subsoil), which were all sampled in the growing season (May) of 2019. Soil microbial diversity and community composition in the topsoil and subsoil were investigated using high-throughput sequencing of bacterial 16S rDNA genes and fungal internal transcribed spacer sequences. According to our results, 1) soil dissolved organic carbon (DOC) significantly decreased after HN addition, and available nitrogen (AN) significantly declined after LN addition, 2) bacterial α-diversity in the subsoil significantly decreased with HN addition, which was affected significantly by the interaction between N addition and soil layer, and 3) soil DOC, rather than pH, was the dominant environmental factor influencing soil bacterial community composition, while AN and MBN were the best predictors of soil fungal community structure dynamics. Moreover, N addition influence both diversity and community composition of soil bacteria more than those of fungi in the subtropical forests. The results of the present study provide further evidence to support shifts in soil microbial community structure in acidic subtropical forests in response to increasing N deposition.

scholarly journals Nitrapyrin has far reaching effects on the soil microbial community structure, composition, diversity and functions

2020 ◽  
Author(s):  
Ruth Schmidt ◽  
Xiao-Bo Wang ◽  
Paolina Garbeva ◽  
Étienne Yergeau
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Microbial Community Structure ◽  
Fungal Community ◽  
Soil Microbial Community ◽  
Ammonia Oxidizers ◽  
Soil Microbial Community Structure ◽  
Soil Microbial ◽  
Fungal Community Structure

AbstractNitrapyrin is one of the most common nitrification inhibitors that are used to retain N in the ammonia form in soil to improve crop yields and quality. Whereas the inhibitory effect of nitrapyrin is supposedly specific to ammonia oxidizers, in view of the keystone role of this group in soils, nitrapyrin could have far-reaching impacts. Here, we tested the hypothesis that nitrapyrin leads to large shifts in soil microbial community structure, composition, diversity and functions, beyond its effect on ammonia-oxidizers. To test this hypothesis, we set-up a field experiment where wheat (Triticum aestivum cv. AC Walton) was fertilized with ammonium nitrate (NH4NO3) and supplemented or not with nitrapyrin. Rhizosphere and bulk soils were sampled twice, DNA was extracted, the 16S rRNA gene and ITS region were amplified and sequenced to follow shifts in archaeal, bacterial and fungal community structure, composition and diversity. To assess microbial functions, several genes involved in the nitrogen cycle were quantified by real-time qPCR and volatile organic compounds (VOCs) were trapped in the rhizosphere at the moment of sampling. As expected, sampling date and plant compartment had overwhelming effects on the microbial communities. However, within these strong effects, we found statistically significant effects of nitrapyrin on the relative abundance of Thaumarchaeota, Proteobacteria, Nitrospirae and Basidiomycota, and on several genera. Nitrapyrin also significantly affected bacterial and fungal community structure, and the abundance of all the N-cycle gene tested, but always in interaction with sampling date. In contrast, nitrapyrin had no significant effect on the emission of VOCs, where only sampling date significantly influenced the profiles observed. Our results point out far-reaching effects of nitrapyrin on soil and plant associated microbial communities, well beyond its predicted direct effect on ammonia-oxidizers. In the longer term, these shifts might counteract the positive effect of nitrapyrin on crop nutrition and greenhouse gas emissions.

scholarly journals Soil multifunctionality is negatively related to microbial community stochasticity in restored grasslands

2021 ◽  
Author(s):  
Yongyong Zhang ◽  
Monika Resch ◽  
Martin Schuetz ◽  
Ziyan Liao ◽  
Beat Frey ◽  
...  
Keyword(s):  
Microbial Community ◽  
Microbial Diversity ◽  
Fungal Community ◽  
Community Assembly ◽  
Soil Microbial Community ◽  
Ecosystem Functions ◽  
Grassland Restoration ◽  
Soil Microbial ◽  
Topsoil Removal ◽  
The Relationship

It is generally assumed that there is a relationship between microbial diversity and multiple ecosystem functions. Although it is indisputable that microbial diversity is controlled by stochastic and deterministic ecological assembly processes, the relationship between these processes and soil multifunctionality (SMF) remains less clear. In this study, we examined how different grassland restoration treatments, namely harvest only, topsoil removal and topsoil removal plus propagule addition, affected i) soil bacterial and fungal community stochasticity, ii) SMF, and iii) the relationship between community stochasticity and SMF. Results showed that soil microbial community stochasticity decreased in all the three restoration treatments, while SMF increased. Soil multifunctionality was found to be significantly and negatively correlated with soil microbial community stochasticity. Plant diversity and plant C/N indirectly influenced SMF by regulating the microbial community stochasticity. Our findings provide empirical evidence that when deterministic community assembly processes dominate in soils, then higher microbial functioning is expected.

scholarly journals Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration

2011 ◽  
Vol 77 (17) ◽  
pp. 6158-6164 ◽  
Author(s):  
Natasha C. Banning ◽  
Deirdre B. Gleeson ◽  
Andrew H. Grigg ◽  
Carl D. Grant ◽  
Gary L. Andersen ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Bacterial Community ◽  
Fungal Community ◽  
Soil Microbial Community ◽  
Ecosystem Restoration ◽  
Community Structures ◽  
Soil Microbial ◽  
Soil Bacterial ◽  
Edaphic Variables

ABSTRACTSoil microbial community characterization is increasingly being used to determine the responses of soils to stress and disturbances and to assess ecosystem sustainability. However, there is little experimental evidence to indicate that predictable patterns in microbial community structure or composition occur during secondary succession or ecosystem restoration. This study utilized a chronosequence of developing jarrah (Eucalyptus marginata) forest ecosystems, rehabilitated after bauxite mining (up to 18 years old), to examine changes in soil bacterial and fungal community structures (by automated ribosomal intergenic spacer analysis [ARISA]) and changes in specific soil bacterial phyla by 16S rRNA gene microarray analysis. This study demonstrated that mining in these ecosystems significantly altered soil bacterial and fungal community structures. The hypothesis that the soil microbial community structures would become more similar to those of the surrounding nonmined forest with rehabilitation age was broadly supported by shifts in the bacterial but not the fungal community. Microarray analysis enabled the identification of clear successional trends in the bacterial community at the phylum level and supported the finding of an increase in similarity to nonmined forest soil with rehabilitation age. Changes in soil microbial community structure were significantly related to the size of the microbial biomass as well as numerous edaphic variables (including pH and C, N, and P nutrient concentrations). These findings suggest that soil bacterial community dynamics follow a pattern in developing ecosystems that may be predictable and can be conceptualized as providing an integrated assessment of numerous edaphic variables.

scholarly journals Effect of Different Fertilization Practices on Soil Microbial Community in a Wheat–Maize Rotation System

2019 ◽  
Vol 11 (15) ◽  
pp. 4088
Author(s):  
Yunlong Zhang ◽  
Tengteng Li ◽  
Honghui Wu ◽  
Shuikuan Bei ◽  
Junling Zhang ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Community Composition ◽  
Microbial Community Structure ◽  
Soil Microbial Community ◽  
Enzyme Activities ◽  
Microbial Community Composition ◽  
Crop Species ◽  
Soil Microbial Community Structure ◽  
Soil Microbial

Little information is known about the effects of different fertilization practices on soil microbiome in intensively managed crop rotations. The objective of this research was to investigate the response of microbial community composition (phospholipid fatty acid, PLFA) and extracellular enzyme activity to fertilization treatments through a three-year experiment. Treatments were: Control (without fertilizer, CK), chemical fertilizer (NPK), NPK + pig manure (NPKM), NPK + straw (NPKS), and NPK + both manure and straw (NPKMS). We found that fertilization had no effect on the microbial abundance except arbuscular mycorrhizal fungi (AMF) PLFA. Soil microbial community composition was significantly affected by crop species and to a lesser extent by fertilization, with a greater influence on the wheat harvest. In addition, soil enzyme activities were enhanced by fertilization, especially in wheat season. Over three years, compared with NPK treatment, addition of organic manure or straw (NPKS and NPKMS) significantly increased the activities of the enzymes except invertase and urease, and the effect was greater at wheat harvest than the maize harvest. Our results indicate that the response of soil microbial community structure and enzyme activities to fertilization takes precedence than microbial biomass in the short term. The temporal variation in soil microbial community structure and enzyme activities in the crop rotation indicate that crop species may be carefully considered for sustainable agricultural intensification management.

scholarly journals Short-term responses and resistance of soil microbial community structure to elevated CO2 and N addition in grassland mesocosms

2017 ◽  
Vol 364 (9) ◽  
Author(s):  
Marie Simonin ◽  
Naoise Nunan ◽  
Juliette M. G. Bloor ◽  
Valérie Pouteau ◽  
Audrey Niboyet
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Elevated Co2 ◽  
Microbial Community Structure ◽  
Soil Microbial Community ◽  
N Addition ◽  
Short Term ◽  
Soil Microbial Community Structure ◽  
Soil Microbial

scholarly journals Soil Bacterial Community Diversity and Composition as Affected by Tillage Intensity Treatments in Corn-Soybean Production Systems

2021 ◽  
Vol 12 (1) ◽  
pp. 157-172
Author(s):  
Shankar G. Shanmugam ◽  
Normie W. Buehring ◽  
Jon D. Prevost ◽  
William L. Kingery
Keyword(s):  
Microbial Community ◽  
Bacterial Community ◽  
Community Composition ◽  
Production System ◽  
Soil Microbial Community ◽  
Production Systems ◽  
Bacterial Community Composition ◽  
Soybean Production ◽  
Soil Microbial ◽  
Soil Bacterial

Our understanding on the effects of tillage intensity on the soil microbial community structure and composition in crop production systems are limited. This study evaluated the soil microbial community composition and diversity under different tillage management systems in an effort to identify management practices that effectively support sustainable agriculture. We report results from a three-year study to determine the effects on changes in soil microbial diversity and composition from four tillage intensity treatments and two residue management treatments in a corn-soybean production system using Illumina high-throughput sequencing of 16S rRNA genes. Soil samples were collected from tillage treatments at locations in the Southern Coastal Plain (Verona, Mississippi, USA) and Southern Mississippi River Alluvium (Stoneville, Mississippi, USA) for soil analysis and bacterial community characterization. Our results indicated that different tillage intensity treatments differentially changed the relative abundances of bacterial phyla. The Mantel test of correlations indicated that differences among bacterial community composition were significantly influenced by tillage regime (rM = 0.39, p ≤ 0.0001). Simpson’s reciprocal diversity index indicated greater bacterial diversity with reduction in tillage intensity for each year and study location. For both study sites, differences in tillage intensity had significant influence on the abundance of Proteobacteria. The shift in the soil bacterial community composition under different tillage systems was strongly correlated to changes in labile carbon pool in the system and how it affected the microbial metabolism. This study indicates that soil management through tillage intensity regime had a profound influence on diversity and composition of soil bacterial communities in a corn-soybean production system.

Sign in / Sign up

Export Citation Format

Share Document