scholarly journals Detección por PCR de Haemoproteus archilochus en Amazilia tzacatl (Trochilidae) en Colombia

2021 ◽  
Vol 27 (1) ◽  
Author(s):  
Angie Nurien Duarte Moreno ◽  
Daniela Villamizar Escalante ◽  
Fernando Rondón González
Keyword(s):  
Cyt B

La infección causada por haemosporidios en colibríes no ha sido estudiada en zonas agroforestales o urbanas de la vertiente occidental de la Cordillera Oriental de los Andes en el departamento de Santander, pese a existir evidencia de esta en otros grupos de aves. Con el fin de detectar e identificar los parásitos causales de infecciones por haemosporidios, se tomaron muestras de sangre de la vena yugular de colibríes en seis localidades.  La presencia de infección se llevó a cabo por PCR y la identificación de los parásitos se hizo a partir de secuencias del gen mitocondrial Citocromo b (Cyt b).  Se obtuvieron 86 muestras de sangre de 20 especies de colibríes.  La prevalencia de infección en general fue del 43 % y en el 18 % de las muestras infectadas del colibrí Amazilia colirufa (Amazilia tzacatl) se identificaron secuencias de Haemoproteus archilochus correspondientes al linaje HUMHA4.  Se reporta por primera vez para Colombia la presencia de H. archilochus en A. tzacatl, por medio de técnicas de biología molecular. Este parásito podría estar implicado en la haemoproteosis de colibríes en el país.

New aspects of the energy-tropic action of mexidol

2018 ◽  
pp. 36-40
Author(s):  
Ю.И. Кирова ◽  
Э.Л. Германова
Keyword(s):  
Vascular Endothelial Growth Factor ◽  
Cerebral Cortex ◽  
Growth Factor ◽  
Atp Synthase ◽  
Oxygen Deficiency ◽  
Vascular Endothelial ◽  
Cyt B ◽  
Respiratory Enzymes ◽  
Catalytic Subunits ◽  
Endothelial Growth Factor

Митохондриогенез и ангиогенез являются ключевыми нейропротекторными механизмами, повышающими устойчивость нервной ткани к условиям гипоксии/ишемии. В настоящее время фармакологическая индукция биогенеза митохондрий является одним из наиболее перспективных и активно разрабатываемых подходов к коррекции ишемических и постишемических нарушений, нейродегенеративных заболеваний и кардиопатий. Выявление факта стимуляции митохондриогенеза эталонными нейропротекторными препаратами позволит существенно расширить представление об их терапевтическом потенциале и принципах применения. Цель исследования - изучение влияния нейропротекторного сукцинатсодержащего препарата мексидол на экспрессию каталитических субъединиц дыхательных ферментов митохондрий, АТФ-синтазы и фактора роста эндотелия сосудов в коре головного мозга крыс с врожденными различиями в устойчивости к дефициту кислорода. Методика. Исследование выполнено на белых беспородных крысах-самцах. Инъекции мексидола (40 мг/кг, внутрибрюшинно) выполняли ежедневно на протяжении 20 сут. Уровень экспрессии каталитических субъединиц дыхательных ферментов митохондрий и АТФ-синтазы, фактора роста эндотелия сосудов и сукцинатного рецептора в ткани коры головного мозга оценивали методом иммуноблоттинга. Общую резистентность организма к острой гипоксии тестировали в гипобарической камере проточного типа при разрежении атмосферы, соответствующем 190 мм рт. ст. (3% О). Результаты. В ходе курса применения мексидола происходило увеличение уровня каталитических субъединиц дыхательных ферментов митохондрий (NDUFV2, SDHA, cyt b, COX1), АТФ-синтазы (ATP5A), фактора роста эндотелия сосудов (VEGF) и сукцинатного рецептора (SUCNR1), особенно выраженное у неустойчивых к гипоксии особей. Заключение. Впервые показана вовлеченность сукцинатсодержащего препарата мексидол в механизмы индукции ферментов энергопродуцирующей системы митохондрий коры головного мозга, что существенно расширяет сложившиеся представления о механизмах его энерготропного действия. Mitochondriogenesis and angiogenesis are crucial neuroprotective mechanisms that increase the resistance of nervous tissue to hypoxia/ischemia conditions. Currently, pharmacological induction of mitochondrial biogenesis is one of the most promising and actively developed approaches for the correction of ischemic and post-ischemic disorders, neurodegenerative diseases and cardiopathies. Revealing the fact of stimulation of mitochondriogenesis with standard neuroprotective drugs will significantly expand the understanding of their therapeutic potential and principles of application. The aim of the research was to study the effect of the neuroprotective succinate-containing drug mexidol on the expression of catalytic subunits of the respiratory enzymes of mitochondria, ATP-synthase and vascular endothelial growth factor in the cerebral cortex of rats with inborn differences in resistance to oxygen deficiency. Methods. The study was carried out on white mongrel rats-males injections of mexidol (40 mg/kg, intraperitoneally) were performed daily for 20 days. The expression level of the catalytic subunits of the respiratory enzymes of mitochondria and ATP-synthase, vascular endothelial growth factor and succinate receptor in the tissue of the cerebral cortex was assessed by immunoblotting. The total resistance of the organism to acute hypoxia was tested in a hypobaric chamber with an atmosphere underpressure corresponding to 190 mm Hg (3% O). Results. During the injection course of mexidol, there was an increase in the level of catalytic subunits of the respiratory enzymes of mitochondria (NDUFV2, SDHA, cyt b, COX1), ATP-synthase (ATP5A), vascular endothelial growth factor (VEGF) and succinate receptor (SUCNR1), especially pronounced in rats with low-resistance to hypoxia. Conclusion. The study revealed for the first time the involvement of the succinate-containing drug mexidol in the mechanisms of induction of enzymes of the energy-producing system of the mitochondria of the cerebral cortex, which significantly expands the existing ideas about the mechanisms of its energy-tropic action.

scholarly journals 752 The impact of grade of differentiation and BRAF mutation status on neoantigen and immune landscape in papillary thyroid cancer

2020 ◽  
Vol 8 (Suppl 3) ◽  
pp. A800-A800
Author(s):  
Myungwoo Nam ◽  
Myungwoo Nam ◽  
Woojung Yang ◽  
Ju Young Lee ◽  
Jaeyoun Choi ◽  
...  
Keyword(s):  
T Cells ◽  
Regulatory T Cells ◽  
Braf Mutation ◽  
Cytolytic Activity ◽  
Activity Score ◽  
Cyt B ◽  
Mutation Status ◽  
Poorly Differentiated ◽  
Immune Traits ◽  
Well Differentiated

BackgroundThe use of immune checkpoint inhibitors (ICIs) in cancer treatment has been approved by the FDA, but its application is experimental in the treatment of papillary thyroid cancer (PTC). Induction of immune response via recognition of neoantigens is considered to be the basis for the treatment mechanism of ICIs.1 However, the neoantigen landscape has not been explored in PTC. Our aim is to investigate the immune landscape of PTC in relation to neoantigens, taking into account the BRAF mutation status and grade of differentiation as contributing factors.MethodsBRAF V600E mutation status and thyroid differentiation scores (TDSs) were gathered from the PTC cohort of The Cancer Genome Atlas (TCGA). TDS was derived from the mRNA expression levels of 16 thyroid function genes to quantify the grade of differentiation. Tumors with TDSs in the 1st quartile and 4th quartile were defined as poorly differentiated and well differentiated, respectively. The neoantigen burden for each sample was predicted using CloudNeo pipeline. The infiltration of immune cells was calculated through CIBERSORT.ResultsAmong 400 patients with predicted neoantigen data, 187 (47%) had BRAF mutations. The BRAF mutated tumors showed increased cytolytic activity score (CYT, p=0.001), increased infiltration of regulatory T cells (Treg, p<0.001), and higher PD-L1 expression (p<0.001) compared to BRAF wild-type tumors (figure 1). In regard to grade of differentiation, poorly differentiated tumors showed increased CYT (p=0.002), increased infiltration of Treg (p<0.001), and higher PD-L1 expression (p<0.001) compared to well differentiated tumors (figure 2). However, BRAF mutation status or grade of differentiation did not correlate with the neoantigen burden. Also, the neoantigen burden did not show any correlations with immune landscape features such as infiltration of CD8+ T cells or Treg, CYT, and PD-L1 expression.Abstract 752 Figure 1Immune traits according to BRAF mutation status. (a) Cytolytic activity score(CYT). (b) Infiltration of regulatory T cells(Tregs). (c) PD-L1 expression.Abstract 752 Figure 2Immune traits according to grade of differentiation. (a) Cytolytic activity score(CYT). (b) Infiltration of regulatory T cells(Tregs). (c) PD-L1 expression.ConclusionsIncreased CYT and higher expression of PD-L1 in the BRAF mutated or the poorly differentiated tumors imply the possible role of ICI use in these subgroups of patients. However, the immune response to these subgroups does not seem to be mediated through the increase in neoantigen formation. Further studies are warranted to explore markers for immunotherapy implication.ReferencesSchumacher TN, Schreiber RD, Neoantigens in cancer immunotherapy. Science 2015; 348:69–74.

Anomalous Reduction of Cytochrome b in Highly Purified Complex III from Baker’s Yeast

1982 ◽  
Vol 37 (5-6) ◽  
pp. 445-447 ◽  
Author(s):  
Francisco F. de la Rosa ◽  
Graham Palmer
Keyword(s):  
Catalytic Amount ◽  
Baker’S Yeast ◽  
Complex Iii ◽  
Control Factor ◽  
Baker's Yeast ◽  
Cyt B ◽  
Pseudo First Order Reaction ◽  
Cyt C ◽  
Sulfur Protein ◽  
Two Phases

AbstractIn highly purified bc1-complex from baker’s yeast, the reduction of cyt c1 and partial reduction of cyt b is obtained by catalytic amount of succinate dehydrogenase and succinate in the presence of 7 μᴍ antimycin. After the addition of ferricyanide the c1 is re-oxidized and a increase in the reduction of b is observed. Using stopped-flow we established that the oxidation of c1 by ferricyanide proceeds as a pseudo-first order reaction and the reduction of b is faster and with two phases. Our observation suggests that these two processes are not directly interconected and that other component than c1 must be the “control factor” in the anomalous reduction of cyt b. This component must be, by exclusion, the iron-sulfur protein.

scholarly journals Genetic characterization and phylogenetic study of Indonesian indigenous catfish based on mitochondrial cytochrome B gene

2020 ◽  
Vol 13 (1) ◽  
pp. 96-103
Author(s):  
Dorothea Vera Megarani ◽  
Herjuno Ari Nugroho ◽  
Zahrah Prawita Andarini ◽  
Yura Dwi Risa B. R. Surbakti ◽  
Rini Widayanti
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Cytochrome B ◽  
Genetic Characterization ◽  
Phylogenetic Study ◽  
Cyt B ◽  
Phylogenetic Structure ◽  
Mitochondrial Cytochrome B ◽  
Sperata Seenghala ◽  
Cyt B Gene

Aim: This study aimed to determine the genetic characterization and phylogenetic structure of Indonesian indigenous catfish using cytochrome B (Cyt B) sequences. Materials and Methods: The genomes of 26 catfishes caught from nine rivers from nine different geographical locations around Indonesia were analyzed. The tissue isolation method was used to isolate the total genome of the fishes. Furthermore, polymerase chain reaction was done to amplify the mtDNA Cyt B using the CytBF and CytBR primers. Following sequencing, the analysis of genetic variation and the phylogenetic relationship was performed using MEGA version X software. Results: Cyt B gene sequencing attained a total of 1139 nucleotides encrypting 379 amino acids for all samples. The ClustalW alignment program using MEGA X software revealed 395 substituted nucleotides, which then translated into 63 amino acid variation sites among all 26 samples. No amino acids in catfish BB were different compared to catfish PM, MP, and KR2,3. Catfish MS had one modified amino acid; KR1 and KS had two different amino acids; BF had 38 different amino acids; EM had 31 different amino acids; and BSBJ had 26 different amino acids compared to catfish BB. The most significant alteration of amino acids was between catfish EM and BF (49 amino acids). Conclusion: Indonesian catfish were divided into five clades based on the Cyt B gene. Samples KR and MP (Sumatra); MS and BB (Kalimantan); and PM (Java) were clustered with Hemibagrus nemurus and Hemibagrus wyckioides (Bagridae family). Samples from Kalimantan (KS) and one sample of KR (KR1) from Sumatra were clustered with Sperata seenghala and Hemibagrus spilopterus (Bagridae family). Samples from Java (BSBJ) were clustered with Pseudolais pleurotaenia (Pangasiidae family). Samples EM (Java) were together with Mystus cavasius (Bagridae family). Samples from West Papua were clustered with Potamosilurus latirostris (Ariidae family).

scholarly journals A revised taxonomy of Asian snail-eating snakes Pareas (Squamata, Pareidae): evidence from morphological comparison and molecular phylogeny

ZooKeys ◽  
2020 ◽  
Vol 939 ◽  
pp. 45-64
Author(s):  
Ping Wang ◽  
Jing Che ◽  
Qin Liu ◽  
Ke Li ◽  
Jie Qiong Jin ◽  
...  
Keyword(s):  
New Species ◽  
Bayesian Inference ◽  
Molecular Phylogeny ◽  
Morphological Data ◽  
Multivariate Morphometrics ◽  
Cryptic Diversity ◽  
Cyt B ◽  
Morphological Comparison ◽  
The Family ◽  
Two New Species

The Asian snail-eating snakes Pareas is the largest genus of the family Pareidae (formerly Pareatidae), and widely distributed in Southeast Asia. However, potential diversity remains poorly explored due to their highly conserved morphology and incomplete samples. Here, on basis of more extensive sampling, interspecific phylogenetic relationships of the genus Pareas were reconstructed using two mitochondrial fragments (cyt b and ND4) and two nuclear genes (c-mos and Rag1), and multivariate morphometrics conducted for external morphological data. Both Bayesian Inference and Maximum Likelihood analyses consistently showed that the genus Pareas was comprised of two distinct, monophyletic lineages with moderate to low support values. Based on evidences from molecular phylogeny and morphological data, cryptic diversity of this genus was uncovered and two new species were described. In additional, the validity of P. macularius is confirmed.

scholarly journals Kajian Penanda Genetik Gen Sitokrom b DNA Mitokondria Ikan Lais dari Sungai Kampar Riau

2018 ◽  
Vol 10 (1) ◽  
pp. 6
Author(s):  
Roza Elvyra ◽  
Dedy Duryadi Solihin
Keyword(s):  
Species Diversity ◽  
Molecular Marker ◽  
Phylogenetic Relationship ◽  
Cytochrome B ◽  
Mitochondrial Cytochrome ◽  
Cyt B ◽  
Phylogenetic Marker ◽  
Mitochondrial Cytochrome B ◽  
Cyt B Gene

The mitochondrial cytochrome b (cyt-b) gene as a phylogenetic marker of lais fish Kryptopterus schilbeides from Kampar River in Riau has been studied. This is a prelimininary research on the utility of cyt-b gene as a molecular marker to obtain species diversity and phylogenetic relationship among Kryptopterus fishes from Kampar River. The primers of L14841 and H15149 were used to amplify the cyt-b gene. The results showed that K. schilbeides has isoleusine at site-81 and metionine at site-114; K. schilbeides from Kampar River and K. schilbeides from GenBank form a phylogeny cluster at 45% value.

scholarly journals Description of New American Carduelis/Spinus Bird Species in La Paz (Bolivia): C./S. lapazensis.

2020 ◽  
Vol 13 (1) ◽  
pp. 24-33
Author(s):  
Antonio Arnaiz-Villena ◽  
Valentín Ruiz-del-Valle ◽  
Fabio Suarez-Trujillo ◽  
Adrian Lopez-Nares ◽  
Alvaro Callado ◽  
...  
Keyword(s):  
New Species ◽  
North America ◽  
Bird Species ◽  
South American ◽  
Cyt B ◽  
Species Definition ◽  
La Paz ◽  
Evolutionary Radiation ◽  
And Behavior ◽  
A New Species

Introduction: South American siskins (Genus Carduelis/Spinus) are the outcome of regional evolutionary radiation from an extant (or other extinct) species: C. notata, a North America siskin, which thrives in Mexico subtropical areas and is parental of one of the three described North American siskin radiations. Methods: Speciation and/or subspeciation of this South American siskin radiation have probably occurred during Pleistocene Epoch. In the present paper, a new species/subspecies akin to C./S. atrata is described by genetic and phenotypic parameters: this new species/subspecies was previously considered a subspecies of C./S. xanthogastra, which thrives further North and is separated about 1,762 km, 1,094 miles, from this described subspecies, Carduelis/ Spinus xanthogastra stejnegeri. Results: Our genetic study using mt cyt b, phenotypic and behavior observations show that this putative C./S. xanthogastra subspecies is either a different species or a C./S. atrata subspecies; we have proposed a provisional name for this finch, C./S. lapazensis, instead of C./S. x. stejnegeri. Conclusion: Species definition is movable and controversial, and it is uncertain in South American siskins, which all show a close genetic and phenotypical relationship, which may be still immersed in speciation processes since Pleistocene Epoch.

Pigment stoichiometry of a newly isolated D1-D2-Cyt b 559 complex from the higher plant Beta vulgaris L

FEBS Letters ◽  
1991 ◽  
Vol 283 (2) ◽  
pp. 255-258 ◽  
Author(s):  
G. Montoya ◽  
I. Yruela ◽  
R. Picorel
Keyword(s):  
Beta Vulgaris ◽  
Cyt B ◽  
Higher Plant
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