scholarly journals Specific amplification of iron receptor genes in Xylella fastidiosa strains from different hosts

2006 ◽  
Vol 29 (1) ◽  
pp. 137-141 ◽  
Author(s):  
Flávia Teresa Hansen Pacheco ◽  
Maria Estela Silva-Stenico ◽  
Augusto Etchegaray ◽  
José Elias Gomes ◽  
Emanuel Carrilho ◽  
...  
2003 ◽  
Vol 93 (8) ◽  
pp. 953-958 ◽  
Author(s):  
W.-B. Li ◽  
W. D. Pria ◽  
P. M. Lacava ◽  
X. Qin ◽  
J. S. Hartung

Xylella fastidiosa, a xylem-limited bacterium, causes several economically important diseases in North, Central, and South America. These diseases are transmitted by sharpshooter insects, contaminated budwood, and natural root-grafts. X. fastidiosa extensively colonizes the xylem vessels of susceptible plants. Citrus fruit have a well-developed vascular system, which is continuous with the vascular system of the plant. Citrus seeds develop very prominent vascular bundles, which are attached through ovular and seed bundles to the xylem system of the fruit. Sweet orange (Citrus sinensis) fruit of cvs. Pera, Natal, and Valencia with characteristic symptoms of citrus variegated chlorosis disease were collected for analysis. X. fastidiosa was detected by polymerase chain reaction (PCR) in all main fruit vascular bundles, as well as in the seed and in dissected seed parts. No visual abnormalities were observed in seeds infected with the bacterium. However, the embryos of the infected seeds weighed 25% less than those of healthy seeds, and their germination rate was lower than uninfected seeds. There were about 2,500 cells of X. fastidiosa per infected seed of sweet orange, as quantified using real-time PCR techniques. The identification of X. fastidiosa in the infected seeds was confirmed by cloning and sequencing the specific amplification product, obtained by standard PCR with specific primers. X. fastidiosa was also detected in and recovered from seedlings by isolation in vitro. Our results show that X. fastidiosa can infect and colonize fruit tissues including the seed. We also have shown that X. fastidiosa can be transmitted from seeds to seedlings of sweet orange. To our knowledge, this is the first report of the presence of X. fastidiosa in seeds and its transmission to seedlings.


Plant Disease ◽  
2000 ◽  
Vol 84 (2) ◽  
pp. 198-198 ◽  
Author(s):  
R. L. Wichman ◽  
D. L. Hopkins ◽  
T. A. Wichman

During the spring of 1998, mature oleanders (Nerium oleander L.), pruned to form a 2-m-high hedge along an interstate highway in Orlando, FL, were observed declining and dying. Numerous plants along a 200-m section of highway were in various stages of decline. Symptoms began as chlorotic mottling along the edges of leaves and as the disease progressed, mottling became more severe and leaf margins became necrotic. Scorched leaves died, and symptoms spread throughout the plants, resulting in defoliation. New growth from the base of affected plants was stunted and severely mottled. Petioles and leaf midribs were taken from leaves with mottling symptoms and assayed for the presence of Xylella fastidiosa by polymerase chain reaction (PCR) and culturing on periwinkle wilt agar medium. For PCR assay, infected tissue from three plants was extracted by grinding in SCP buffer (1.0 g of trisodium citrate and 1.0 g of disodium succinate per liter, in 0.015 M phosphate buffer, pH 7.0) containing 0.02 M sodium ascorbate and 5% acid-washed polyvinylpyrrolidone. Amplification was performed with primers RST31 and RST33, as previously described, for specific detection of X. fastidiosa strains (1). A X. fastidiosa-specific amplification product was produced from all three extracts. For culturing, petioles and leaf midribs were cut into 0.5-cm sections, and sap was extracted from the tissue by squeezing with a forceps. Sap was blotted directly onto the medium and incubated at 28°C. Colonies typical of X. fastidiosa were observed after 10 to 14 days of incubation, and single colonies were transferred to fresh periwinkle wilt agar. The colonies were confirmed as X. fastidiosa by PCR assay. Two of the oleander strains were used to inoculate three red and three white 18-month-old oleanders by needle-puncture of the stem through a cloudy drop of bacterium in SCP buffer (108 CFU/ml). For controls, three red and three white oleanders were inoculated with SCP buffer alone. After 9 weeks in a screenhouse, marginal leaf mottling was observed in both the red and white oleanders inoculated with X. fastidiosa, and the bacterium was reisolated from leaves as described above, completing Koch's postulates. Control plants remained symptomless. Oleander leaf scorch caused by X. fastidiosa has been described previously in California and Texas (2). This is the first report of oleander leaf scorch in Florida and the eastern United States. References: (1) G. V. Minsavage et al. Phytopathology 84:456, 1994. (2) A. H. Purcell et al. Phytopathology 89:53, 1999.


1996 ◽  
Vol 75 (05) ◽  
pp. 757-759 ◽  
Author(s):  
Rainer Blasczyk ◽  
Markus Ritter ◽  
Christian Thiede ◽  
Jenny Wehling ◽  
Günter Hintz ◽  
...  

SummaryResistance to activated protein C is the most common hereditary cause for thrombosis and significantly linked to factor V Leiden. In this study, primers were designed to identify the factor V mutation by allele-specific PCR amplification. 126 patients with thromboembolic events were analysed using this technique, PCR-RFLP and direct sequencing. The concordance between these techniques was 100%. In 27 patients a heterozygous factor VGln506 mutation was detected, whereas one patient with recurrent thromboembolism was homozygous for the point mutation. Due to its time- and cost-saving features allele-specific amplification should be considered for screening of factor VGln506.


2003 ◽  
Author(s):  
Charles Thomas Parker ◽  
Dorothea Taylor ◽  
George M Garrity
Keyword(s):  

2003 ◽  
Author(s):  
Charles Thomas Parker ◽  
George M Garrity
Keyword(s):  

2020 ◽  
Vol 13 (1) ◽  
pp. 14
Author(s):  
Annamaria Castrignanò ◽  
Antonella Belmonte ◽  
Ilaria Antelmi ◽  
Ruggiero Quarto ◽  
Francesco Quarto ◽  
...  

Xylella fastidiosa subsp. pauca (Xfp) is one of the most dangerous plant pathogens in the world. Identified in 2013 in olive trees in south–eastern Italy, it is spreading to the Mediterranean countries. The bacterium is transmitted by insects that feed on sap, and causes rapid wilting in olive trees. The paper explores the use of Unmanned Aerial Vehicle (UAV) in combination with a multispectral radiometer for early detection of infection. The study was carried out in three olive groves in the Apulia region (Italy) and involved four drone flights from 2017 to 2019. To classify Xfp severity level in olive trees at an early stage, a combined method of geostatistics and discriminant analysis was implemented. The results of cross-validation for the non-parametric classification method were of overall accuracy = 0.69, mean error rate = 0.31, and for the early detection class of accuracy 0.77 and misclassification probability 0.23. The results are promising and encourage the application of UAV technology for the early detection of Xfp infection.


2021 ◽  
Vol 11 (4) ◽  
pp. 1943
Author(s):  
Joo-Young Kim ◽  
Ju Yeon Jung ◽  
Da-Hye Kim ◽  
Seohyun Moon ◽  
Won-Hae Lee ◽  
...  

Analytical techniques such as DNA profiling are widely used in various fields, including forensic science, and novel technologies such as direct polymerase chain reaction (PCR) amplification are continuously being developed in order to acquire DNA profiles efficiently. However, non-specific amplification may occur depending on the quality of the crime scene evidence and amplification methods employed. In particular, the ski-slope effect observed in direct PCR amplification has led to inaccurate interpretations of the DNA profile results. In this study, we aimed to reduce the ski-slope effect by using dimethyl sulfoxide (DMSO) in direct PCR. We confirmed that DMSO (3.75%, v/v) increased the amplification yield of large-sized DNA sequences more than that of small-sized ones. Using 50 Korean buccal samples, we further demonstrated that DMSO reduced the ski-slope effect in direct PCR. These results suggest that the experimental method developed in this study is suitable for direct PCR and may help to successfully obtain DNA profiles from various types of evidence at crime scenes.


Author(s):  
Sabrina Di Masi ◽  
Giuseppe E. De Benedetto ◽  
Cosimino Malitesta ◽  
Maria Saponari ◽  
Cinzia Citti ◽  
...  

AbstractOlive quick decline syndrome (OQDS) is a disorder associated with bacterial infections caused by Xylella fastidiosa subsp. pauca ST53 in olive trees. Metabolic profile changes occurring in infected olive trees are still poorly investigated, but have the potential to unravel reliable biomarkers to be exploited for early diagnosis of infections. In this study, an untargeted metabolomic method using high-performance liquid chromatography coupled to quadrupole-time-of-flight high-resolution mass spectrometry (HPLC-ESI-Q-TOF-MS) was used to detect differences in samples (leaves) from healthy (Ctrl) and infected (Xf) olive trees. Both unsupervised and supervised data analysis clearly differentiated the groups. Different metabolites have been identified as potential specific biomarkers, and their characterization strongly suggests that metabolism of flavonoids and long-chain fatty acids is perturbed in Xf samples. In particular, a decrease in the defence capabilities of the host after Xf infection is proposed because of a significant dysregulation of some metabolites belonging to flavonoid family. Moreover, oleic acid is confirmed as a putative diffusible signal factor (DSF). This study provides new insights into the host-pathogen interactions and confirms LC-HRMS-based metabolomics as a powerful approach for disease-associated biomarkers discovery in plants. Graphical abstract


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