Relationships of Oxylobus, an Alpine Genus of Eupatorieae (Asteraceae)

2021 ◽  
Vol 46 (4) ◽  
pp. 1121-1130
Author(s):  
Edward E. Schilling ◽  
Rosario Redonda-Martínez ◽  
Esteban Manuel Martínez Salas ◽  
Jose L. Panero
Keyword(s):  
Sequence Data ◽  
Sister Group ◽  
Nrdna Its ◽  
Molecular Phylogenetic ◽  
Group A ◽  
Plastid Markers

Abstract— A molecular phylogenetic investigation was carried out to clarify aspects of the systematics of Oxylobus, a primarily Mexican alpine genus of Eupatorieae. Analysis of sequence data from two nuclear (nrDNA ITS, ETS) and three plastid markers (rbcL, ndhF, matK) confirmed the monophyly of Oxylobus and placed species of Ageratina as its sister group. A survey of 56 samples of Oxylobus using nrDNA ITS and ETS provided support for the currently accepted species, and showed the recently described O. coyulensis to be distinct and the sister group to the rest of the genus. The results also confirmed the placement of O. juarezensis in synonymy with O. subglabrus. The results of a broad survey of Ageratina for ITS data showed that it is likely not monophyletic as currently circumscribed. The phylogenetic results also highlighted the distinctiveness of Piqueria and Piqueriopsis as a distinct clade at the base of Eupatorieae.

Phylogenetic reassignment of basal cyclostome braconid parasitoid wasps (Hymenoptera) with description of a new, enigmatic Afrotropical tribe with a highly anomalous 28S D2 secondary structure

2020 ◽  
Vol 190 (3) ◽  
pp. 1002-1019 ◽  
Author(s):  
Donald L J Quicke ◽  
Sergey A Belokobylskij ◽  
Yves Braet ◽  
Cornelis van Achterberg ◽  
Paul D N Hebert ◽  
...  
Keyword(s):  
Sequence Data ◽  
Elongation Factor ◽  
Sequence Divergence ◽  
Sister Group ◽  
Morphological Characters ◽  
Dna Sequence Data ◽  
Elongation Factor 1 Alpha ◽  
Molecular Phylogenetic ◽  
Molecular Dataset ◽  
First Time

Abstract A new tribe of braconid wasps provisionally included in the Rhyssalinae, Laibaleini trib. nov., type genus Laibalea gen. nov. (type species Laibalea enigmatica sp. nov.), from Kenya and the Central African Republic, is described. A molecular dataset, with emphasis on basally derived taxa based on four gene fragments (28S D2–D3 expansion region, COI barcode, elongation factor 1-alpha and 16S ribosomal DNA), was analysed both alone and in combination with a morphological dataset. Molecular phylogenetic placement of the new species into an existing subfamily is complicated by the extreme sequence divergence of the three sequences obtained for Laibalea. In both the combined sequence analysis and the combined DNA plus morphological tree, Laibalea is recovered as a sister group to the Rhyssalinae plus all non-cyclostome lineage braconids excluding Mesostoinae, Maxfischeriinae and Aphidiinae. A consensus of morphological characters and molecular analyses suggests inclusion of Laibalea either in the otherwise principally Holarctic subfamily Rhyssalinae or perhap more basally, in the principally Gondwanan Mesostoinae s.l., although we cannot exclude the possibility that it might represent a separate basal lineage. We place Laibalea in its own tribe, provisionally included in Rhyssalinae. The DNA sequence data are presented for several genera for the first time. Avga, the type genus of Avgini, is shown not to belong to Mesostoinae s.l. or Hormiinae, but its exact relationships remain uncertain. The generic compositions of Rhyssalinae and Mesostoinae s.l. are revised. Anachyra, Apoavga, Neptihormius, Neoavga and Opiopterus are shown to belong to Mesostoinae s.s. A key to the tribes of Rhyssalinae is provided.

Molecular Systematics of Lecanora Subgenus Placodium

1998 ◽  
Vol 30 (4-5) ◽  
pp. 415-425 ◽  
Author(s):  
Ulf Arup ◽  
Martin Grube
Keyword(s):  
Dna Sequence ◽  
Molecular Systematics ◽  
Sequence Data ◽  
Sister Group ◽  
Molecular Data ◽  
Monotypic Genus ◽  
Secondary Chemistry ◽  
Dna Sequence Data ◽  
Group A ◽  
Nuclear Its

AbstractA first hypothesis for the phylogeny of Lecanora subgen. Placodium is presented by using molecular data. Previous evolutionary ideas and classification concepts for this group with non-molecular data are re-investigated using DNA sequence data from the nuclear ITS and 5.8S regions. Using Protoparmelia as an outgroup, the Lecanora subfusca group together with the L. rupicola group appear as a sister group to assemblages with lobate species. Subgen. Placodium as currently accepted, is not monophyletic. Molecular data suggest that the Lecanora dispersa group and the L. polytropa group are widened by lobate species and there is evidence from the ITS data that the monotypic genus Arctopeltis Poelt is closely related to the L. dispersa group. A congruence between molecular data and secondary chemistry supports the broader concept of the L. dispersa group suggested by the molecular data.

scholarly journals Phylogeny of Muhlenbergia subg. Pseudosporobolus, including M. spatha (Poaceae, Chloridoideae, Cynodonteae, Muhlenbergiinae) now found in Zacatecas, Mexico

PhytoKeys ◽  
2018 ◽  
Vol 103 ◽  
pp. 83-94 ◽  
Author(s):  
Paul M. Peterson ◽  
Yolanda Herrera Arrieta ◽  
Konstantin Romaschenko
Keyword(s):  
Molecular Phylogeny ◽  
Sequence Data ◽  
Type Locality ◽  
Nrdna Its ◽  
San Luis ◽  
San Luis Potosi ◽  
Plastid Markers ◽  
San Luis Potosí

Muhlenbergiaspatha, previously known only from near the type locality in San Luis Potosí, is reported from two localities in Zacatecas, Mexico. Historically, botanists have overlooked this diminutive annual. To clarify affinities of M.spatha, we present a molecular phylogeny emphasising species in M.subg.Pseudosporobolus using sequence data from two plastid markers (rpl32-trnL and rps16 intron) and nrDNA ITS. In addition, we include an updated description, illustration and discussion of the habitat of M.spatha.

Setting the Molecular Phylogenetic Framework for the Dermaptera

2003 ◽  
Vol 34 (1) ◽  
pp. 65-79 ◽  
Author(s):  
◽  
◽  
Keyword(s):  
16S Rdna ◽  
18S Rdna ◽  
Sequence Data ◽  
Indirect Evidence ◽  
Sister Group ◽  
Bootstrap Support ◽  
Molecular Phylogenetic ◽  
Phylogenetic Framework ◽  
Insect Group ◽  
Basal Position

AbstractThe insect group Dermaptera is traditionally divided into the Forficulina, comprising the majority of the species, the African rodent commensals, Hemimerina, and the Indo-Malayan bat commensals, Arixeniina. Numerous contrasting classifications and phylogenies exist for the Dermaptera, based on morphological, molecular and biogeographic data. We have collected varying number of sequences from fifteen Forficulina and six outgroups to establish a molecular hypothesis of the group's phylogeny. Despite repeated attempts, we were unable to obtain sequence data for Arixeniina and Hemimerina. We obtained partial sequences for four taxa for cytochrome oxidase 1 (with two additional taxa from GenBank), twelve for 16S rDNA, fifteen for 28S rDNA expansion region 1, seven for expansion region 9-10, and nine for 18S rDNA (plus seven sequences from GenBank). In combined analyses, the root of the Dermaptera lies between Anisolabididae and other families. This position is not directly supported by bootstrap analyses. Indirect evidence for the basal position of Anisolabididae, Pygidicranidae and Apachyidae is however found in the association of the four other studied groups (Labiduridae, Spongiphoridae, Chelisochidae and Forficulidae) in a derived clade with significant bootstrap support. The division of Forficulina into Catadermaptera and Eudermaptera is not supported as the former is paraphyletic in the present analyses. Eudermaptera is monophyletic with bootstrap support but is sister group to Labiduridae, a taxon usually assigned to the Catadermaptera.

Russula buyckii, a new species of Russula subgenus Incrustatula from Eastern Himalaya, India

Phytotaxa ◽  
2016 ◽  
Vol 252 (2) ◽  
pp. 123 ◽  
Author(s):  
SOUMITRA PALOI ◽  
ARUN KUMAR DUTTA ◽  
PRAKASH PRADHAN ◽  
ANIRBAN ROY ◽  
KRISHNENDU ACHARYA
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Identification ◽  
Sequence Data ◽  
Eastern Himalaya ◽  
Its Sequence ◽  
Similar Species ◽  
Nrdna Its ◽  
Molecular Phylogenetic ◽  
A New Species

Russula buyckii, a new species of Russula (subgen. Incrustatula, sect. Lilaceinae and subsect. Lilaceinae) is described from Eastern Himalaya, India. Its macro- and micro-morphological features are described in detail and compared with those of similar species. Identification and categorization of R. buyckii was supported by the molecular phylogenetic analysis based on the nrDNA ITS sequence data.

A five-marker molecular phylogeny of the Styphelieae (Epacridoideae, Ericaceae) supports a broad concept of Styphelia

2015 ◽  
Vol 28 (6) ◽  
pp. 368 ◽  
Author(s):  
Caroline Puente-Lelièvre ◽  
Michael Hislop ◽  
Mark Harrington ◽  
Elizabeth A. Brown ◽  
Maria Kuzmina ◽  
...  
Keyword(s):  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Morphological Diversity ◽  
Morphological Characters ◽  
Bayesian Analyses ◽  
Close Phylogenetic Relationship ◽  
Broad Concept ◽  
Molecular Phylogenetic ◽  
Large Genus ◽  
Plastid Markers

The Styphelieae is the largest of the seven tribes within the subfamily Epacridoideae Arn. (Ericaceae Juss.). Recent molecular phylogenetic work has resulted in the recircumscription of some genera and the erection of new ones, but several non-monophyletic genera remain. Most of them are concentrated in the well-supported Styphelia–Astroloma clade, which contains species currently assigned to Leucopogon R.Br., Styphelia Sm., Astroloma R.Br., Croninia J.M. Powell and Coleanthera Stschegl. Parsimony and Bayesian analyses of sequence data from four plastid markers (rbcL, matK, trnH–psbA, and atpB–rbcL), and the nuclear ribosomal internal transcribed spacer (ITS) for 207 taxa corroborate the polyphyly of the genera Astroloma, Leucopogon and Styphelia and resolve 12 well supported groups. Of these groups, two can be distinguished by unique morphological features and another six by different character combinations. The remaining groups are morphologically heterogeneous and inconsistent, and not readily distinguishable. A number of species remain ungrouped either because their phylogenetic relationships are not clear or because they do not show strong morphological affinities with the group to which they have a close phylogenetic relationship. Translating the results into a phylogenetic classification is a choice between accepting a single, large genus or at least 12 smaller genera. The first option would result in a heterogeneous assemblage conveying limited morphological information. The multi-generic option would be a better reflection of the morphological diversity of the clade, but would result in many genera lacking readily observable, diagnostic morphological characters. We prioritise the nomenclatural stability inherent in the former approach and advocate expanding Styphelia to include all taxa in the Styphelia–Astroloma clade.

Diversification of the North American Doellingeria-Eucephalus Clade (Astereae: Asteraceae) Inferred from Molecular and Morphological Evidence

2019 ◽  
Vol 44 (4) ◽  
pp. 930-942
Author(s):  
Geraldine A. Allen ◽  
Luc Brouillet ◽  
John C. Semple ◽  
Heidi J. Guest ◽  
Robert Underhill
Keyword(s):  
North American ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
Morphological Evidence ◽  
South American ◽  
New Combinations ◽  
The North ◽  
Hybridization Event ◽  
Ancient Hybridization

Abstract—Doellingeria and Eucephalus form the earliest-diverging clade of the North American Astereae lineage. Phylogenetic analyses of both nuclear and plastid sequence data show that the Doellingeria-Eucephalus clade consists of two main subclades that differ from current circumscriptions of the two genera. Doellingeria is the sister group to E. elegans, and the Doellingeria + E. elegans subclade in turn is sister to the subclade containing all remaining species of Eucephalus. In the plastid phylogeny, the two subclades are deeply divergent, a pattern that is consistent with an ancient hybridization event involving ancestral species of the Doellingeria-Eucephalus clade and an ancestral taxon of a related North American or South American group. Divergence of the two Doellingeria-Eucephalus subclades may have occurred in association with northward migration from South American ancestors. We combine these two genera under the older of the two names, Doellingeria, and propose 12 new combinations (10 species and two varieties) for all species of Eucephalus.

scholarly journals Sequence data from isolated lichen-associated melanized fungi enhance delimitation of two new lineages within Chaetothyriomycetidae

2021 ◽  
Vol 20 (7) ◽  
pp. 911-927
Author(s):  
Lucia Muggia ◽  
Yu Quan ◽  
Cécile Gueidan ◽  
Abdullah M. S. Al-Hatmi ◽  
Martin Grube ◽  
...  
Keyword(s):  
Sequence Data ◽  
Single Species ◽  
Sister Group ◽  
Asexual Propagation ◽  
Dna Sequence Data ◽  
Wide Range ◽  
The Family ◽  
Rock Inhabiting Fungi ◽  
Stable Habitat

AbstractLichen thalli provide a long-lived and stable habitat for colonization by a wide range of microorganisms. Increased interest in these lichen-associated microbial communities has revealed an impressive diversity of fungi, including several novel lineages which still await formal taxonomic recognition. Among these, members of the Eurotiomycetes and Dothideomycetes usually occur asymptomatically in the lichen thalli, even if they share ancestry with fungi that may be parasitic on their host. Mycelia of the isolates are characterized by melanized cell walls and the fungi display exclusively asexual propagation. Their taxonomic placement requires, therefore, the use of DNA sequence data. Here, we consider recently published sequence data from lichen-associated fungi and characterize and formally describe two new, individually monophyletic lineages at family, genus, and species levels. The Pleostigmataceae fam. nov. and Melanina gen. nov. both comprise rock-inhabiting fungi that associate with epilithic, crust-forming lichens in subalpine habitats. The phylogenetic placement and the monophyly of Pleostigmataceae lack statistical support, but the family was resolved as sister to the order Verrucariales. This family comprises the species Pleostigma alpinum sp. nov., P. frigidum sp. nov., P. jungermannicola, and P. lichenophilum sp. nov. The placement of the genus Melanina is supported as a lineage within the Chaetothyriales. To date, this genus comprises the single species M. gunde-cimermaniae sp. nov. and forms a sister group to a large lineage including Herpotrichiellaceae, Chaetothyriaceae, Cyphellophoraceae, and Trichomeriaceae. The new phylogenetic analysis of the subclass Chaetothyiomycetidae provides new insight into genus and family level delimitation and classification of this ecologically diverse group of fungi.

scholarly journals Molecular phylogeny of Astragalus section Anthylloidei (Fabaceae) inferred from nrDNA ITS and plastid rpl32-trnL(UAG) sequence data

2014 ◽  
Vol 38 ◽  
pp. 637-652 ◽  
Author(s):  
Kosar NADERI SAFAR ◽  
Shahrokh KAZEMPOUR OSALOO ◽  
Ali Asghar MAASSOUMI ◽  
Shahin ZARRE
Keyword(s):  
Molecular Phylogeny ◽  
Sequence Data ◽  
Nrdna Its

scholarly journals Noteworthy record of the Ethiopian genet, Genetta abyssinica, (Carnivora, Viverridae) from Djibouti informs its phylogenetic position within Genetta

Mammalia ◽  
2019 ◽  
Vol 83 (2) ◽  
pp. 180-189 ◽  
Author(s):  
Adam W. Ferguson ◽  
Houssein R. Roble ◽  
Molly M. McDonough
Keyword(s):  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Alternative Hypothesis ◽  
Phylogenetic Analyses ◽  
Phylogenetic Position ◽  
Sister Relationship ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Molecular Phylogenetic ◽  
Relationship Of

AbstractThe molecular phylogeny of extant genets (Carnivora, Viverridae,Genetta) was generated using all species with the exception of the Ethiopian genetGenetta abyssinica. Herein, we provide the first molecular phylogenetic assessment ofG. abyssinicausing molecular sequence data from multiple mitochondrial genes generated from a recent record of this species from the Forêt du Day (the Day Forest) in Djibouti. This record represents the first verified museum specimen ofG. abyssinicacollected in over 60 years and the first specimen with a specific locality for the country of Djibouti. Multiple phylogenetic analyses revealed conflicting results as to the exact relationship ofG. abyssinicato otherGenettaspecies, providing statistical support for a sister relationship to all other extant genets for only a subset of mitochondrial analyses. Despite the inclusion of this species for the first time, phylogenetic relationships amongGenettaspecies remain unclear, with limited nodal support for many species. In addition to providing an alternative hypothesis of the phylogenetic relationships among extant genets, this recent record provides the first complete skeleton of this species to our knowledge and helps to shed light on the distribution and habitat use of this understudied African small carnivore.

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