scholarly journals Accomplishments in wheat rust research in South Africa

2020 ◽  
Vol 116 (11/12) ◽  
Author(s):  
Zacharias A. Pretorius van der Walt ◽  
Renée Prins ◽  
Elsabet Wessels ◽  
Cornel M. Bender ◽  
Botma Visser ◽  
...  

Rust diseases, although seasonal, have been severe constraints in wheat production in South Africa for almost 300 years. Rust research gained momentum with the institution of annual surveys in the 1980s, followed by race identification, an understanding of rust epidemiology, and eventually a focused collaboration amongst pathologists, breeders and geneticists. Diversity in South African populations of Puccinia triticina, P. graminis f. sp. tritici and P. striiformis f. sp. tritici has been described and isolates are available to accurately phenotype wheat germplasm and study pathogen populations at national, regional and global levels. Sources of resistance have been, and still are, methodically analysed and molecular marker systems were developed to incorporate, stack and verify complex resistance gene combinations in breeding lines and cultivars. Vigilance, capacity, new technologies, collaboration and sustained funding are critical for maintaining and improving the current research impetus for future management of these important diseases.

1998 ◽  
Vol 12 (1) ◽  
pp. 27-31
Author(s):  
N.P. du Preez ◽  
P. van Eldik ◽  
M. Möhr ◽  
H.H. van der Watt

In a two-part analysis (see pp 17–26 for Part 1), the authors discuss the key results of a South African project conducted during 1996 which focused on the factors relating to the development and establishment of technology in a country. The study investigated through a detailed questionnaire survey and a literature survey the various factors that promote the development and establishment of technology by comparing their perceived importance with the actual role they currently play in South Africa. This paper, Part 2, concentrates on the role of industry. The study showed that the availability of high-level technological people dominated the top (at 90%) of the list of factors relating to individual organizations and the role they play in the development of technology. Other prominent factors were the existence of a corporate technology strategy (88.4%), the need to improve manufacturing efficiency and processes (88.4%), the ability of top management to understand new technologies (87.9%), and the availability of funds for research and development (86.2%). The survey clearly indicated that South African organizations were not performing well with respect to these and other factors evaluated. All of them have been rated below 50%, indicating the seriousness of the problem. The corresponding recommendations made are of importance to younger countries with developing economies.


Zootaxa ◽  
2009 ◽  
Vol 1990 (1) ◽  
pp. 41-54 ◽  
Author(s):  
ARTEM YU SINEV

Study of South African populations of chydorid cladocerans in the Alona affinis-group (Anomopoda: Chydoridae) revealed two closely related species, Alona affinis (Leydig, 1860) and a second, previously unknown, species A. martensi sp. n. No significant differences were seen between South African and Eurasian populations of A. affinis sensu stricto. A. martensi sp. n. differs from other species of the affinis-group by a shorter spine on the basal segment of antennal exopodite, and can be distinguished from A. affinis by a number of additional morphological characters. A. affinis is distributed mainly in the East and South regions of the Republic of South Africa, and is less frequented in this region. Confined mainly to artificial water bodies its presence may be human-mediated. A. martensi sp. n. sems to be endemic to the Drakensberg mountains within the borders of the KwaZulu-Natal Province and Lesotho.


2017 ◽  
Vol 27 (5) ◽  
pp. 299-305 ◽  
Author(s):  
Adam Kuzdraliński ◽  
Anna Kot ◽  
Hubert Szczerba ◽  
Agnieszka Ostrowska ◽  
Michał Nowak ◽  
...  

The species <i>Puccinia triticina</i> (Pt) and <i>Puccinia striiformis</i> f. sp. <i>tritici </i>(Pst) are devastating cereal pathogens that cause leaf and stripe rust diseases. We developed PCR assays for the species-specific detection of Pt and Pst, 2 biological agents that cause wheat rust disease. For each pathogen, we validated 3 primer sets that target the second largest subunits of the RNA polymerase II (<i>rpb2</i>) and β-tubulin 1 (<i>tub1</i>) genes. The specificities of the primers were verified using naturally infected plant materials with visual symptoms of disease. All primer sets amplified a single DNA fragment of the expected length. The primer sets LidPr15/16, LidPr1/2, and LidPs13/14 were able to detect small amounts of pure fungal DNA with sensitivities of 0.1, 1, and 10 pg/μL, respectively. A sufficient detection limit (1 pg/μL to 5 ng/μL) was observed for all assays when the sensitivity test was performed with host plant DNA. The study also evaluated the simultaneous detection of both rust pathogens, and the multiplex PCR assay generated amplicons of 240 and 144 bp in length for Pts (LidPs9/10) and Pt (LidPr1/2), respectively.


Plant Disease ◽  
2011 ◽  
Vol 95 (5) ◽  
pp. 611-611 ◽  
Author(s):  
T. Terefe ◽  
Z. A. Pretorius ◽  
C. M. Bender ◽  
B. Visser ◽  
L. Herselman ◽  
...  

A new race of Puccinia triticina was collected from common wheat (Triticum aestivum) in the Eastern and Western Cape provinces during the annual rust survey in 2009. Six single-pustule isolates from a field collection, which were shown to be a new race in preliminary analyses, were inoculated onto seedlings of 16 Thatcher (Tc) near-isogenic differential lines (1) and other tester lines with known Lr genes. Standard procedures for inoculation, incubation, and rust evaluation were followed (4) and all infection studies were repeated. The low infection type of Lr18 was confirmed at 18°C. All six isolates were avirulent (infection types [ITs] 0; to 2) to Lr1, 2a, 2c, 9, 11, 16, 18, and 24 and virulent (ITs 3 to 4) to Lr3, 3ka, 10, 14a, 17, 26, 30, B, and Tc (control). The new race, named 3SA145 according to the ARC-Small Grain Institute notation, corresponds to race CCPS in the North American system (1). On the basis of seedling ITs of the extended Lr gene set, 3SA145 was avirulent (ITs 0; to 22+) to Lr2b, 19, 21, 23, 25, 28, 29, 32, 36 (E84081), 38, 45, 47 (KS90H450), 50 (KS96WGRC36), 51 (R05), and 52 and virulent to Lr3bg, 15, 20 (Thew), 27+31 (Gatcher), and 33. Lines containing the adult plant resistance (APR) genes Lr12 (RL6011, IT 3++), Lr13 (CT263, IT 3), Lr22b (Tc, IT 4), and Lr37 (RL6081, IT 3) were susceptible in the adult stage to 3SA145, whereas lines with the APR genes Lr22a (RL6044, IT ;1), Lr34 (RL6058, IT Z1), and Lr35 (RL6082, IT ;1) were resistant in controlled infection studies in a greenhouse. A control, the common race (3SA133), was virulent only on Tc adult plants. In seedlings, 3SA133 was avirulent to Lr15, 17, 26, and 27+31, but unlike 3SA145, it was virulent to Lr1, 2c, 11, 18, 24, and 28. Races 3SA133 and 3SA145 did not differ in their virulence to the remaining seedling genes. Virulence to Lr37 has been reported in several countries, including Australia, Canada, Uruguay, and the United States (1,2). Prior to the detection of 3SA145, adult plants of RL6081 were resistant to all wheat leaf rust races in South Africa. In 2009, however, RL6081 showed severity levels of up to 30S at certain Western Cape trap plot sites. Of 124 South African bread wheat cultivars and advanced breeding lines tested at the seedling stage, 3SA145 was virulent to 48, whereas 3SA133 was virulent to 36 entries. A further six entries were heterogeneous in their reaction to 3SA145. In adult plant infection studies of 48 South African spring wheats in a greenhouse, 19 were susceptible (flag leaf IT ≥3) and 22 were resistant to 3SA145. Seven entries showed a Z3 flag leaf IT indicating adult plant resistance. According to a simple sequence repeat (SSR) study using 17 primer-pair combinations described by Szabo and Kolmer (3), 3SA145 showed 30% homology with the dominant South African races. Although virulence to Lr12 and Lr13 has been known in different leaf rust races in South Africa, to our knowledge, this is the first report of combined virulence to Lr12, 13, and 37. The SSR data and unique avirulence/virulence profile suggest that 3SA145 may be an exotic introduction to South Africa. References: (1) J. A. Kolmer et al. Plant Dis. 89:1201, 2005. (2) B. McCallum and P. Seto-Goh. Can. J. Plant Pathol. 31:80, 2009. (3) L. Szabo and J. Kolmer. Mol. Ecol. Notes 7:708, 2007. (4) T. Terefe et al. S. Afr. J. Plant Soil 26:51, 2009.


Author(s):  
Margaret D.M. Cullen ◽  
Andre P. Calitz ◽  
Mary-Ann Chetty

Background: Research universities in South Africa are well-recognised sources of new knowledge and their contributions to innovation are manifested through the creation, transfer and commercialisation of new technologies originating from academic research. Research collaboration between universities, industry and the community offer various benefits, which include funding for students and researchers and third-stream income for universities. Additionally, industry can gain access to new technologies to incorporate in improved products and services.Aim: The aim of this study was to identify the factors that encourage academic researchers’ involvement in technology commercialisation.Setting: The growth in university technology transfer in South Africa can be attributed to the South African Intellectual Property Rights from the Publicly Financed Research and Development Act (Act 51 of 2008). The establishment of Technology Transfer Offices at universities across South Africa, aims to involve researchers in commercialisation activities, champion the innovation conversation within universities and to progress innovations from concept to application in society.Methods: The study followed a positivistic research philosophy and a deductive approach. Researchers (n=38) in two faculties at the Nelson Mandela University participated in this exploratory study and completed an online survey. The respondents were selected through purposeful sampling.  Results: The findings indicate that a combination of incentives is necessary to enable and to encourage researcher involvement in the commercialisation of research. A set of recommendations based on the findings and implementation suggestions are proposed.Conclusion: A combination of monetary and non-monetary incentives are required to enable academics’ involvement in commercialisation activities.


Zootaxa ◽  
2018 ◽  
Vol 4370 (2) ◽  
pp. 137
Author(s):  
CHANTELLE GIRGAN ◽  
ANTOINETTE SWART ◽  
MARIETTE MARAIS ◽  
HENDRIKA FOURIE

As part of the South African Plant-Parasitic Nematode Survey (SAPPNS), an extensive nematode diversity survey was conducted in the Telperion Nature Reserve, Mpumalanga, South Africa. During this survey, samples of grass seeds were collected. Some of these seeds yielded specimens of the genera Aphelenchoides, Aphelenchus and Panagrolaimus. Identified species include Aphelenchoides africanus, A. besseyi, A. lichenicola, A. rutgersi, A. spicomucronatus and Panagrolaimus leperisini. Four of these species are new records for South Africa and the South African populations of these species are described in this paper. 


Plant Disease ◽  
2001 ◽  
Vol 85 (7) ◽  
pp. 713-717 ◽  
Author(s):  
B. D. van Niekerk ◽  
Z. A. Pretorius ◽  
W. H. P. Boshoff

Although leaf rust, caused by Puccinia hordei, is considered an important disease of barley (Hordeum vulgare) and regularly reaches epidemic proportions, pathogenic variability has never been studied in South Africa. From 1994 to 1997, only one pathotype (SAPh 3231) was identified with virulence to resistance genes Rph1, Rph4, Rph5, Rph10, and Rph11. During 1998, a second pathotype (SAPh 7321) was identified, differing from pathotype SAPh 3231 only in virulence to Rph12. Pathotype SAPh 7321 increased rapidly in the area where it was first detected, resulting in localized epidemic outbreaks in 1999. The reactions of various South African cultivars and breeding lines toward these pathotypes were determined, and the presence of Rph12 was postulated for B93/4, Krona, Optic, Prisma, and SSG 532. Rph genes showed varying degrees of temperature sensitivity, with none of the known genes displaying major changes in their phenotypes except Rph8, which was less effective at higher temperatures. Eight accessions of two wild Hordeum spp. occurring abundantly in the barley growing regions were found to be either weak or nonhosts for P. hordei.


1997 ◽  
Vol 87 (3) ◽  
pp. 289-298 ◽  
Author(s):  
T.-K. Qin

AbstractA population genetic study of Halotydeus destructor (Tucker) and H. anthropus Qin & Halliday was undertaken using allozyme electrophoresis. Allele frequency data were collected from five polymorphic loci (Gpi—glucose phosphate isomerase, G6pd—glucose-6-phosphate dehydrogenase, Idh — isocitrate dehydrogenase, Mdh — malate dehydrogenase, and Pgm–phosphoglucomutase) to determine genetic variability and levels of gene flow among Australian and South African populations. The two species could be distinguished by the most common allele at Gpi and usually Pgm. There was no evidence for subdivision among the Australian populations of H. destructor, but the levels of substructuring among the South African populations of H. destructor and those of H. anthropus were high. The geographic origin of H. destructor is discussed; the evidence suggests that the original source of the Australian populations of H. destructor was from Cape Town, South Africa.


Zootaxa ◽  
2011 ◽  
Vol 2786 (1) ◽  
pp. 51 ◽  
Author(s):  
LAURENCE A. MOUND ◽  
MICHAEL STILLER

A key is provided to 14 species of Scirtothrips recorded from Africa south of the Sahara, including Cape Verde Islands. S. dodonaeae sp. n. is described from Dodonaea in South Africa, and the possibility is discussed that South African populations here referred to as S. aff. dorsalis represent a new species. Type specimens of the six Scirtothrips species described by J.C.Faure have been re-examined, and brief diagnoses are provided for all 14 species.


2021 ◽  
pp. 15-38
Author(s):  
Vanessa Bueno-Sancho ◽  
◽  
Clare M. Lewis ◽  
Diane G. O. Saunders ◽  
◽  
...  

Rust fungi (order: Pucciniales) constitute the largest group of plant parasitic fungi and include many species of agricultural importance. This includes the three wheat rust fungi (Puccinia graminis f. sp. tritici, Puccinia striiformis f. sp. tritici and Puccinia triticina) that have posed a threat to crop production throughout history. This chapter provides an overview of the wheat rust pathogen lifecycle that has been critical to the design of effective disease management strategies and discusses recent integration of basic biological knowledge and genomic-led tools within an epidemiological framework. Furthermore, we include a case study on the “field pathogenomics” technique, illustrating the value of genomic-based tools in disease surveillance activities. Bringing together advances in understanding basic pathogen biology, developments in modelling for disease forecasting and identification, alongside genomic-led advances in surveillance and resistance gene cloning, holds great promise for curtailing the threat of these notorious pathogens.


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