scholarly journals Erwinia mallotivora is the causal agent of papaya bacterial crown rot disease in Lampung Timur, Indonesia

2021 ◽  
Vol 57 (No. 2) ◽  
pp. 122-133
Author(s):  
Radix Suharjo ◽  
Hani Anggrainy Oktaviana ◽  
Titik Nur Aeny ◽  
Cipta Ginting ◽  
Rachmansyah Arianto Wardhana ◽  
...  

Sixteen bacterial strains showing oval, convex with a white colony colour were obtained from the water-soaked lesions on the petioles and leaves of infected papaya (cv. calina) collected from a papaya field in Lampung Timur, Indonesia. The pathogenicity test showed that all the strains produced the same symptoms with those found in the field. Four representative strains were then chosen for further investigation. The phenotypic characteristics revealed that the strains resembled Erwinia mallotivora. Two representative strains were further identified using a 16SrDNA sequence analysis. The result showed that the strains were placed within the group of the type strain and the reference strains of E. mallotivora. To the best of our knowledge, this is the first finding of E. mallotivora as the causal agent of papaya crown rot disease in Indonesia. Among the sixteen plants used for the host range test, the symptom was only observed on eggplants, but not on the other fifteen plant species.

2004 ◽  
Vol 54 (3) ◽  
pp. 693-697 ◽  
Author(s):  
Midori Kurahashi ◽  
Akira Yokota

Six bacterial strains were isolated from healthy marine organisms that were collected from the coast of the Kanto area in Japan. Phylogenetic analysis based on 16S rDNA sequence similarity showed that the six isolates formed a separate cluster in the γ-Proteobacteria and were related to the genera Alteromonas and Glaciecola (<91·6 % similarity). The isolates were related closely to each other (DNA–DNA reassociation values of 74–93 %). The isolates had a polar flagellum and were Gram-negative, mesophilic, strictly aerobic rods that required salt for growth. Distinct phenotypic features of this group included the ability to hydrolyse agar and white pigmentation of colonies. The DNA G+C content of the isolates was 48–50 mol%. The major quinone was Q-8. Phenotypic characteristics of the isolates differed from those of members of the genera Alteromonas and Glaciecola. The name Agarivorans albus gen. nov., sp. nov. is proposed for the six isolates; the type strain is MKT 106T (=IAM 14998T=LMG 21761T).


2014 ◽  
Vol 64 (Pt_11) ◽  
pp. 3760-3767 ◽  
Author(s):  
Min-Jung Kwak ◽  
Jung-Sook Lee ◽  
Keun Chul Lee ◽  
Kwang Kyu Kim ◽  
Mi Kyung Eom ◽  
...  

Four Gram-stain-negative, aerobic, rod-shaped bacterial strains, MM-124, MM-126, NB-68 and NB-77, were isolated from the coastal seawater or a region with a bloom of sea sparkle around Geoje island in Korea. The sequence similarity values of the 16S rRNA gene between the isolates and Sulfitobacter mediterraneus DSM 12244T ranged from 97.7 to 98.2 %, and phylogenetic relationships suggested that they belong to a phylogenetic branch that includes the genera Sulfitobacter and Roseobacter . The isoprenoid quinone of all three novel strains was ubiquinone-10 and the major fatty acid was cis-vaccenic acid, as in other species of the genus Sulfitobacter . However, there were several differences in the morphological, physiological and biochemical characteristics among the four strains and the reference species of the genus Sulfitobacter . Moreover, the average nucleotide identity values between the three sequenced isolates and the reference strains were below 76.33, indicating that genomic variation exists between the isolates and reference strains. Chemotaxonomic characteristics together with phylogenetic affiliations and genomic distances illustrate that strains MM-124, NB-68 and NB-77 represent novel species of the genus Sulfitobacter , for which the names Sulfitobacter geojensis sp. nov. (type strain MM-124T = KCTC 32124T = JCM 18835T), Sulfitobacter noctilucae sp. nov. (type strain NB-68T = KCTC 32122T = JCM 18833T) and Sulfitobacter noctilucicola sp. nov. (type strain NB-77T = KCTC 32123T = JCM 18834T) are proposed.


2006 ◽  
Vol 56 (2) ◽  
pp. 459-463 ◽  
Author(s):  
Yu-Qin Zhang ◽  
Wen-Jun Li ◽  
Ke-Yun Zhang ◽  
Xin-Peng Tian ◽  
Yi Jiang ◽  
...  

Four Gram-negative, motile, rod-shaped bacterial strains were isolated from soil samples collected from south-east China. A taxonomic study including phylogenetic analysis based on 16S rRNA gene sequences and phenotypic characteristics was performed. DNA G+C contents of the four strains were 63–66 mol%. Their predominant ubiquinone was Q-8. The fatty acid profiles contained C16 : 1 ω7c (36·9–54·7 %) and C16 : 0 (22·8–25·5 %) as the major components. Based on their phenotypic characteristics, phylogenetic position as determined by 16S rRNA gene sequence analysis and DNA–DNA hybridization results, the four isolates are considered to represent four novel species of the genus Massilia, for which the names Massilia dura sp. nov. (type strain 16T=CCTCC AB 204070T=KCTC 12342T), Massilia albidiflava sp. nov. (type strain 45T=CCTCC AB 204071T=KCTC 12343T), Massilia plicata sp. nov. (type strain 76T=CCTCC AB 204072T=KCTC 12344T) and Massilia lutea sp. nov. (type strain 101T=CCTCC AB 204073T=KCTC 12345T) are proposed.


2010 ◽  
Vol 60 (6) ◽  
pp. 1418-1426 ◽  
Author(s):  
Anatoly P. Dobritsa ◽  
M. C. S. Reddy ◽  
Mansour Samadpour

Resequencing of the 16S rRNA gene of the type strain of Herbaspirillum putei Ding and Yokota 2004 revealed 99.9 % sequence similarity to that of the type strain of Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004. This high phylogenetic relatedness of H. putei and H. huttiense was confirmed by the results of DNA–DNA hybridization between H. huttiense DSM 10281T and H. putei ATCC BAA-806T (reassociation value 96 %). Therefore, it is proposed to reclassify the type strain of H. putei as a strain of H. huttiense. However, the genome of the type strain of H. putei is about 0.9 Mb larger than that of the H. huttiense type strain. This results in a decrease in the reassociation value in the reciprocal DNA–DNA hybridization to 72 %, a level slightly above the threshold for delineating bacterial species. These data and distinctive phenotypic characteristics indicate that the name Herbaspirillum putei is a later heterotypic synonym of Herbaspirillum huttiense and permit the description of two novel subspecies, Herbaspirillum huttiense subsp. huttiense subsp. nov. (type strain ATCC 14670T =JCM 21423T =DSM 10281T) and Herbaspirillum huttiense subsp. putei subsp. nov., comb. nov. (type strain 7-2T =JCM 21495T =ATCC BAA-806T). Three bacterial strains, IEH 4430T, IEH 4515 and IEH 8757, isolated from water were found to be the closest relatives of these strains. Strain IEH 8757 was classified as a strain of H. huttiense subsp. putei. Studies of genotypic and phenotypic features of strains IEH 4430T and IEH 4515 showed that the strains represent a novel species, which is most closely related to H. huttiense and for which the name Herbaspirillum aquaticum sp. nov. is proposed (type strain IEH 4430T =DSM 21191T =ATCC BAA-1628T).


2007 ◽  
Vol 57 (5) ◽  
pp. 923-931 ◽  
Author(s):  
Beatriz Cámara ◽  
Carsten Strömpl ◽  
Susanne Verbarg ◽  
Cathrin Spröer ◽  
Dietmar H. Pieper ◽  
...  

Three bacterial strains, designated MT1T, RW10T and IpA-2T, had been isolated previously for their ability to degrade chlorosalicylates or isopimaric acid. 16S rRNA gene sequence analysis demonstrated that these bacteria are related to species of the genus Pseudomonas. Analysis of the results of DNA–DNA hybridization with several close phylogenetic neighbours revealed a low level of hybridization (less than 57 %). On the basis of phenotypic characteristics, phylogenetic analysis, DNA–DNA relatedness data and chemotaxonomic analysis, it is concluded that these isolates represent separate novel species, for which the names Pseudomonas reinekei sp. nov. (type strain MT1T =DSM 18361T=CCUG 53116T), Pseudomonas moorei sp. nov. (type strain RW10T =DSM 12647T=CCUG 53114T) and Pseudomonas mohnii sp. nov. (type strain IpA-2T =DSM 18327T=CCUG 53115T) are proposed.


2012 ◽  
Vol 62 (Pt_10) ◽  
pp. 2400-2404 ◽  
Author(s):  
Tamae Seki ◽  
Atsuko Matsumoto ◽  
Risa Shimada ◽  
Yuki Inahashi ◽  
Satoshi Ōmura ◽  
...  

Two bacterial strains, designated KV-962T and KV-963, were isolated from soil collected from a field in Japan. Cells of both strains were Gram-staining-positive, non-spore-forming, short rod-shaped and motile. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains were related to Conexibacter woesei DSM 14684T, with a similarity value of 98.6 %. These strains possessed MK-7 (H4) as the sole menaquinone and contained C18 : 1ω9c, C17 : 1ω6c and iso-C16 : 0 as the major fatty acids. On the basis of genotypic and phenotypic characteristics, strain KV-962T and KV-963 were indicated as a novel species of the genus Conexibacter , for which the name Conexibacter arvalis sp. nov. is proposed. The type strain is KV-962T ( = DSM 23288T  = NBRC 106558T)


EDIS ◽  
2007 ◽  
Vol 2007 (20) ◽  
Author(s):  
Natalia A. Peres ◽  
James C. Mertely

PP 242, a 2-page illustrated fact sheet by N.A. Peres and James C. Mertely, describes this new crown-rot disease in Florida -- causal agent and symptoms, disease development and spread, and control. Published by the UF Department of Plant Pathology, November 2007. PP242/PP161: Charcoal Rot of Strawberries Caused by Macrophomina phaseolina (ufl.edu)


2020 ◽  
Author(s):  
Yuan Xie ◽  
Zhifang Wang ◽  
Ke Li ◽  
Dongwei Liu ◽  
Yifan Jia ◽  
...  

Abstract Background: Fusarium pseudograminearum is the predomenant causal agent of devastating crown rot diseases in cereal crops around the world. Mycoviruses have attracted increasing attention as potential biological control agents on plant diseases. The unique mycoviruse isolated from F. pseudograminearum is Fusarium pseudograminearum megabirnavirus 1 (FpgMBV1), which is a new member of the family Megabirnaviridae. To determine the hypovirulence effects of FpgMBV1 on F. pseudograminearum to wheat plants is critical for the potential application of FpgMBV1 in the control of cereal crown rot disease. Methods: Hyphal tip cultures were conducted to obtain a FpgMBV1-free strain, named as FC136-2A-V-. A hyg gene was transformed into a highly virulent virus-negative stain WZ-8A of F. pseudograminearum to obtain the deduced strain WZ-8A-HygR-V-. WZ-8A-HygR-V- was used in pairing culture with the FpgMBV1-carrying F. pseudograminearum strain FC136-2A to obtain a FpgMBV1-positive strain WZ-8A-HygR-V+. Then the two pairs of strains, FC136-2A-V-/FC136-2A and WZ-8A-HygR-V-/WZ-8A-HygR-V+, were used to determine the potential effect on F. pseudograminearum by the infection of FpgMBV1 through tests on the growth, sensitivity to stress and cellophane penetrating ability in vitro and the pathogenicity to wheat plants.Results: FpgMBV1 could be cured by hyphal tip culture and horizontally transferred between F. pseudograminearum strains through pairing culture. Reduction of FpgMBV1-carrying strains on hyphal growth were found under the treatment of 0.5% SDS. No differences in the growth rates of tested strains in the treatments with 1 M NaCl, 1 M KCl, or 15 mM H2O2. Comparing to virus-negative strains, the In vitro cellophane penetrating ability was lost in FpgMBV1-carrying strains. The disease index of wheat plants inoculated with FC136-2A-V- was significantly higher than that inoculated with FC136-2A, while the pathogenicity of WZ-8A-HygR-V+ reduced significantly comparing to that of WZ-8A-HygR-V-.Conclusions: FpgMBV1 is the causal agent of the low pathogenicity to wheat plants of its original host F. pseudograminearum strain FC136-2A. And FpgMBV1 could be horizontally transferred to another F. pseudograminearum strain and reduce its pathogenicity to wheat plants.


Plant Disease ◽  
2021 ◽  
Author(s):  
Chang-Gi Back ◽  
Walftor Dumin ◽  
You-Kyoung Han ◽  
Yeong-Seok Bae ◽  
Jong-Han Park

Botryosphaeria dothidea (B. dothidea) is a fungal pathogen commonly associated with stem canker, dieback, and rot disease in a variety of woody plants worldwide (Dong and Guo, 2020). In Korea, B. dothidea was reported to cause a disease problem to serval crops such as apple and blueberry (Kim, 1995; Choi, 2011). In early 2020, a typical symptom resembling the stem rot disease was spotted to occur at a plumcot cultivation area around Wanju (35.827870, 127.030380) province, Korea. At the early stage of infection, a small blister appeared on the plumcot branch and stem. However, as the blister extended, a light brown canker was observed appeared on the infected area and in some cases a sticky sap oozed from the branch bark crack. If not managed or treated properly, all leaves beyond the infection site will turn brown, wilt, and the whole plumcot tree eventually dies. A survey in the affected area showed that approximately 5% of the plumcot trees were infected which cause up to 10% reduction in total production. To identify the causal agent, symptomatic tissues were excised and surface sterilized with 70% ethanol for 30 sec followed by 1% NaClO for 30 sec before rinsing with sterile water, thrice. The samples were then dried with a piece of filter paper and later air-dried before being placed on a potato dextrose agar (PDA). The PDA plates were then incubated at 25°C for 5 days with 12 hours light/dark cycles period. Among several fungal isolates obtained, four were selected for further analyses. Morphological identification revealed that the fungal conidia were hyaline, ovoid, fusiform (type that rarely form a septum) and unicellular with an average size of 18 - 20 μm × 4.5 -5.5 μm (n = 50). These morphological characters have a strong resemblance to B. dothidea that described by Slipper et al., (2004). For molecular identification, Internal transcribed spacer (ITS), beta-tubulin (β-tubulin) and elongation factor 1 alpha (EF-1α) were amplified and sequenced using universal primer pairs ITS1/ITS4 (White et al., 1990), Bt2a/Bt2b (Glass and Donaldson, 1995) and EF1/EF2 (O’Donnell et al. 1998) respectively. Alignment analysis showed that ITS (LC602817), β-tubulin (LC602820) and EF-1α (LC602821) sequences were 99-100% identical to the orthologous genes identified in B. dothidea infecting soybean in China [MW130133 (identity 537/536 bp), MW147482 (identity 394/394 bp) and MW147481 (identify 250/250 bp) respectively] (Chen et al. 2021). However, phylogenetic analysis of concatenated ITS, β-tubulin and EF-1α genes sequence established the identity of these isolate as B. dothidea. Due to the 100% identical at the molecular level, isolate NIHHS 20-262 was selected as a representative for further analysis. For the pathogenicity test, fungal mycelium (via PDA plug) was used as a source of inoculum for both intact and detached plumcot stems trials. For the intact trial, mycelium was inoculated on the wounded spots of ten plumcot stems that grew at the NIHHS trial farm. Ten days post-inoculation (dpi), disease symptoms i.e. stem colour turn from greenish to dark brown was observed at the inoculated sites. For the detached trial, mycelium was inoculated on the wounded spots of ten detached plumcot stems. The inoculated stems were kept in a closed container to maintain 90% humidity before incubated at 25ºC in the dark. Interestingly, on the detached stems, disease symptoms (greenish colour turn to dark brown) were observed to appear seven days early compare to intact stems. A sterile PDA plug replacing fungal mycelium served as a negative control and the result shows no symptoms were observed on either intact or detached control stems. For consistency purposes, pathogenicity tests on intact stems were performed on three different plumcot trees, whereas three biological replicates for detached stems. Isolation and re-identification of two colonies from the infected sites (intact and detached stems) were attempted and the results obtained were identical to the original isolate, thus fulfilling Koch’s postulates. Local farmers described this disease as a “certain death disease” in plumcot. Therefore, accurate identification of B. dothidea as the causal agent is critical for effective disease management to minimise qualitative and quantitative losses in the plumcot industry. Although has been reported to cause dieback disease in blueberry in Korea (Choi, 2011), to our knowledge, this is the first study to report B. dothidea causing stem rot diseases on the plumcot trees in Korea.


2020 ◽  
Vol 21 (2) ◽  
Author(s):  
Titik Nur Aeny ◽  
Radix Suharjo ◽  
Cipta Ginting ◽  
Dwi Hapsoro ◽  
Ainin Niswati

Abstract. Aeny TN, Suharjo R, Ginting C, Hapsoro D, Niswati A. 2020. Characterization and host range assessment of Dickey zeae associated with pineapple soft rot disease in East Lampung, Indonesia. Biodiversitas 21: 587-595. The study aims to characterize the Dickeya zeae associated with pineapple soft rot in East Lampung, Indonesia and to assess the bacterial host range. From the blister-like lesion-symptom, bacteria were isolated with the morphological characteristics: circular, convex, cream white milk-colored, with diameter colonies ranging from 1-2 mm in diameter. Two strains (N-Unila 5 and N-Unila 10) were selected for further investigation including pathogenicity test on pineapple seedling, species identification by phenotypic characteristics and molecular techniques using sequence analysis of 16SrDNA, recA, and dnaX as well as host range test on 25 different plant species. The result of the pathogenicity test showed similar symptoms to those observed in the field. Physiological and biochemical characterization revealed that the two isolates were Gram-negative bacteria, fermentative, lecithinase positive, non-fluorescent on King’s B medium, able to grow on YDC medium at 41oC, did not produce H2S and did not grow in the presence of 5% NaCl. The isolates capable of using Myo-inositol, M-tartrate, mannitol, L-tartrate, lactose, glycerol, D-melibiose, D-arabinose, citrate, and cis-aconitic acid but did not utilize starch, S-ketoglucanate, L-ascorbic acid, inulin, folic acid, D-raffinose and tartrate as a sole carbon source. Phenotypic characteristics indicated that the strains were in the group of Dickeya spp. bv. 3 (phenon 1). Sequence analysis of 16S rDNA, recA, and dnaX revealed that the strains were placed in the same cluster with the reference strain of D. zeae. Host range assessment showed positive soft rot symptoms in Aloe vera, chinese cabbage, dragon-fruit, eggplant, lettuce, and welsh onion that have never been reported before.


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