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Plant Disease ◽  
2021 ◽  
Author(s):  
Chang-Gi Back ◽  
Walftor Dumin ◽  
You-Kyoung Han ◽  
Yeong-Seok Bae ◽  
Jong-Han Park

Botryosphaeria dothidea (B. dothidea) is a fungal pathogen commonly associated with stem canker, dieback, and rot disease in a variety of woody plants worldwide (Dong and Guo, 2020). In Korea, B. dothidea was reported to cause a disease problem to serval crops such as apple and blueberry (Kim, 1995; Choi, 2011). In early 2020, a typical symptom resembling the stem rot disease was spotted to occur at a plumcot cultivation area around Wanju (35.827870, 127.030380) province, Korea. At the early stage of infection, a small blister appeared on the plumcot branch and stem. However, as the blister extended, a light brown canker was observed appeared on the infected area and in some cases a sticky sap oozed from the branch bark crack. If not managed or treated properly, all leaves beyond the infection site will turn brown, wilt, and the whole plumcot tree eventually dies. A survey in the affected area showed that approximately 5% of the plumcot trees were infected which cause up to 10% reduction in total production. To identify the causal agent, symptomatic tissues were excised and surface sterilized with 70% ethanol for 30 sec followed by 1% NaClO for 30 sec before rinsing with sterile water, thrice. The samples were then dried with a piece of filter paper and later air-dried before being placed on a potato dextrose agar (PDA). The PDA plates were then incubated at 25°C for 5 days with 12 hours light/dark cycles period. Among several fungal isolates obtained, four were selected for further analyses. Morphological identification revealed that the fungal conidia were hyaline, ovoid, fusiform (type that rarely form a septum) and unicellular with an average size of 18 - 20 μm × 4.5 -5.5 μm (n = 50). These morphological characters have a strong resemblance to B. dothidea that described by Slipper et al., (2004). For molecular identification, Internal transcribed spacer (ITS), beta-tubulin (β-tubulin) and elongation factor 1 alpha (EF-1α) were amplified and sequenced using universal primer pairs ITS1/ITS4 (White et al., 1990), Bt2a/Bt2b (Glass and Donaldson, 1995) and EF1/EF2 (O’Donnell et al. 1998) respectively. Alignment analysis showed that ITS (LC602817), β-tubulin (LC602820) and EF-1α (LC602821) sequences were 99-100% identical to the orthologous genes identified in B. dothidea infecting soybean in China [MW130133 (identity 537/536 bp), MW147482 (identity 394/394 bp) and MW147481 (identify 250/250 bp) respectively] (Chen et al. 2021). However, phylogenetic analysis of concatenated ITS, β-tubulin and EF-1α genes sequence established the identity of these isolate as B. dothidea. Due to the 100% identical at the molecular level, isolate NIHHS 20-262 was selected as a representative for further analysis. For the pathogenicity test, fungal mycelium (via PDA plug) was used as a source of inoculum for both intact and detached plumcot stems trials. For the intact trial, mycelium was inoculated on the wounded spots of ten plumcot stems that grew at the NIHHS trial farm. Ten days post-inoculation (dpi), disease symptoms i.e. stem colour turn from greenish to dark brown was observed at the inoculated sites. For the detached trial, mycelium was inoculated on the wounded spots of ten detached plumcot stems. The inoculated stems were kept in a closed container to maintain 90% humidity before incubated at 25ºC in the dark. Interestingly, on the detached stems, disease symptoms (greenish colour turn to dark brown) were observed to appear seven days early compare to intact stems. A sterile PDA plug replacing fungal mycelium served as a negative control and the result shows no symptoms were observed on either intact or detached control stems. For consistency purposes, pathogenicity tests on intact stems were performed on three different plumcot trees, whereas three biological replicates for detached stems. Isolation and re-identification of two colonies from the infected sites (intact and detached stems) were attempted and the results obtained were identical to the original isolate, thus fulfilling Koch’s postulates. Local farmers described this disease as a “certain death disease” in plumcot. Therefore, accurate identification of B. dothidea as the causal agent is critical for effective disease management to minimise qualitative and quantitative losses in the plumcot industry. Although has been reported to cause dieback disease in blueberry in Korea (Choi, 2011), to our knowledge, this is the first study to report B. dothidea causing stem rot diseases on the plumcot trees in Korea.


Author(s):  
C. Vanniarajan ◽  
P. Magudeeswari ◽  
R. Gowthami ◽  
S.M. Indhu ◽  
K.R. Ramya ◽  
...  

Background: Pigeon pea is an important dietary protein source for humans but the production was constrained by various biotic and abiotic factors. Breeding strategies were followed to improve yield and developing high yielding varieties but at the same time utilization of genetic resources have declined. Pigeon pea is native to India with huge natural genetic variability in the local germplasm and its wild relatives. So it is necessary to identify and select breeding material from germplasm with considerable genetic and morphological variability to utilize in breeding programmes. As an initial study, 200 pre-breeding lines developed were evaluated for morphological variability patterns.Methods: A total of two hundred lines selected from F4 generation of pigeon pea developed at ICAR-NBPGR were evaluated in Randomized Block design (RBD) during 2014-2015 kharif season under Indo-Swiss collaboration in Biotechnology at Agricultural College and Research Institute, Madurai (TNAU). The accessions found to be superior in seed yield than the local check APK1were forwarded to the next generation (2015-2016) for assessment of genetic variability, heritability, genetic advance and association studies.Result: Qualitative traits were evaluated and variation in leaflet shape, stem colour, pattern of streaks and base seed colour were observed. All tested lines expressed greater variability for most of the traits. Maximum coefficient of variation was observed for number of pods per plant followed by number of primary branches per plant. Selection of traits with moderate heritability coupled with high genetic advance like number of pods per plant, number of primary branches per plant could help in crop improvement program. Seed yield was positively correlated with number of seeds per pod, number of pods per plant and hundred seed weight. Potential genetic stocks and donors for high yield were selected based on hundred seed weight and seeds per pod. The accessions superior in number of pods and seed yield than check were forwarded to next generation for assessment. The identified trait-specific accessions will help in future breeding program.


Author(s):  
K. Satish ◽  
S. Muniswamy ◽  
G. Girish ◽  
Vikas Kulkarni ◽  
J.R. Diwan ◽  
...  

Background: Association of several morphological traits such as trichome length and trichome density on the pod surface have been found to influence host plant resistance to insect pests. Genetic diversity analysis is used to identify the divergent genotypes and to utilize these genotypes to exploit heterosis. Further, morphological characters are stable across environments owing to oligogeneic nature, they serve as morphological markers in breeding which can be used in varietal or genotypic identification, varietal purification and even in seed production. Hence, the current study aimed to investigate on host plant resistance using portable paper microscope ‘foldscope’, genetic diversity and morphological characters.Methods: A total of 154 germplasm lines with three checks were evaluated in Augmented Block Design (ABD) at Zonal Agricultural Research Station (ZARS), Kalaburagi, during kharif, 2018 to study their genetic diversity. Trichome length and trichome density were recorded using ‘foldscope’ 75 randomly selected genotypes, then correlated with shrivelled seed yield per plot due to pod fly incidence. Morphological characterization of 14 qualitative traits were recorded.Result: Grouping of 157 germplasm lines into twelve clusters indicated a wider genetic diversity for the traits studied, of which 7 clusters were solitary with one entry each. The genotypes with more trichome density and length had less damage by the pod fly. Large variations for morphological characters was observed among the genotypes for qualitative traits such as pod colour, stem colour, flower colour, seed morphology and pod trichomes. 


2020 ◽  
Vol 31 (1) ◽  
pp. 10-18
Author(s):  
A Miah ◽  
NR Saha ◽  
MY Ali ◽  
M Kamrujjaman ◽  
MSMS Parvej

Twenty-two morpho-agronomic traits of 42 jute genotypes, including 4 varieties with 38 accessions of C. capsularis were evaluated to assess the extent and patterns of variability and their relationships. Seed traits exhibited a wider range of variation than fiber traits. Qualitative traits were also the most informative. Considerable ranges of variability were observed in stem colour, petiole colour, stipule colour, plant technical height, base diameter, dry fibre weight and dry stick weight. Based on major yield contributing characters’ accessions 628, 633, 635 and 646 performed better in most of the cases than the control variety   CVL-1, CVE-3, BJC-7370 and BJC-83. Progressive Agriculture 31 (1): 10-18, 2020


2020 ◽  
pp. 5-12
Author(s):  
Arju Miah ◽  
A. K. M. Shahadat Hossain ◽  
Nihar Ranjan Saha ◽  
Md. S. M. Shahriar Parvej ◽  
Md. Younus Ali ◽  
...  

Kenaf (Hibiscus cannabinus L.) is a fiber crop classified in the genus Hibiscus (Malvaceae), and has a great potential for its multipurpose utilization, in addition to its traditional usage. Varietal identification of kenaf is always problematic and knowledge on genetic variability of kenaf varieties is also limited, which significantly hindered our effective utilization and conservation of the valuable kenaf germplasm. In order to find a proper method for identifying kenaf varieties and studying their variation, morpho-agronomic characters were analyzed. Fifty eight accessions of kenaf germplasm collected from Gene Bank Department of Bangladesh Jute Research Institute were characterized at Jute Agriculture Experiment Station, Manikganj during April 2014 to December 2014. The accessions were characterized for fifteen morpho-agronomic attributes as per Hibiscus descriptor in order to select superior genotypes for the genetic improvement of kenaf. Considerable ranges of variability were observed in stem colour, petiole colour, plant height, base diameter, dry fibre weight, dry core weight, green weight with leaves and green weight without leaves. Based on major yield contributing characters accessions 1653, 3384, 3928 and 4202 performed better than the control varieties HC-2 and HC-95.


Author(s):  
I. T. Gbadamosi ◽  
M. Abberton ◽  
A. C. Igwe ◽  
F. Soyode ◽  
O. J. Olawuyi

Aims: This study investigated morphological characterization of eighty accessions of Dioscorea burkilliana obtained from the Genetic Resources Center of International Institute of Tropical Agriculture (IITA) Ibadan, Nigeria.  Study Design and Methods: The experimental field was laid out in a complete randomized design with three replicates on plots of 10 meters length spaced at one meter between rows and one meter within rows (10 m x 1 m x 1 m). Results: The evaluation of nine qualitative and six quantitative traits revealed phenotypic variations in D. burkilliana accessions using IPGRI’s descriptors. The mature stem colour of spot at spine base (MSCSSB) had the highest mean of 61.73 cm, while young stem with absence or presence of scale leaves (YSA/PSL) had least value of 0.37 cm. The principal component analysis (PCA) produced the highest eigenvector of 3.122 for Prin 1 with highest proportion of 20.81%, while Prin 15 had the least (0.11%). Also, in Prin 1, the mature leaf petiole at base (MLP A), mature leaf petiole at middle ( MLP B) and mature leaf petiole at top (MLP C) were closely related compared to matured leaf measurement  MLM-Breadth A, MLM-Breadth B and MSA-PCS. There was positive and strong relationship between mature leaf petiole at base (MLP-A) with mature leaf petiole at middle (MLP-B) (r = 0.84, p< 0.005) and mature leaf petiole at top (MLP-C) (r = 0.75). The dendrogram was delineated into seven cluster groups in which cluster V had 18 accessions which was the highest, while cluster VI had the least with one accession (DbB 222). Conclusion: The strong positive associations among MLP-A, MLP-B and MLP-C as well as MSS SAB and MSA/PCS suggested the consideration of these traits for future breedings. Accessions DbB 83, DbB 140 and DbB 254 could be recommended as parent material for the improvement of Discorea burkilliana.


Phytotaxa ◽  
2019 ◽  
Vol 408 (3) ◽  
pp. 178-194
Author(s):  
RANIA A. HASSAN ◽  
WAFAA M. AMER

Datura stramonium (Solanaceae) is an annual weed found in most temperate and subtropical regions of the world. The taxonomic identity of this species is still under debate since Linnaeus first published the name. Early on, many varieties and forms were recognized. In Egypt, D. stramonium presents in two forms: the white-flowered ‘stramonium’ form and violet-flowered ‘tatula’ form. Some authors treated D. stramonium and D. tatula as two distinct species, while others included D. tatula within D. stramonium as either a variety or forma. The present study aimed to elucidate the taxonomic identity of both the white ‘stramonium’ and the violet ‘tatula’ forms based on morphological, palynological and cytogenetic studies extended to karyotyping. A taxonomic study of these forms was carried out using 75 morphological and pollen characters. Significant morphological differences were observed; the most important ones were flower and stem colour, in addition to flower and fruit dimensions. The anatomical examination of juvenile-fruit in acropetal transverse sections, revealed the gradual displacement of parietal placentation at the fruit base to axile at the fruit apex. Pollen of both forms showed no significant differences. Cytogenetic results revealed the presence of a diploid chromosome number (2n=2x=24) in both forms, with minor aneuploidy in the ‘tatula’ form. According to the karyotyping, notable differences were found between the two studied forms, including the centromeric index, total genomic length, and intrachromosomal asymmetry index. Morphological and cytogenetic data revealed that the two forms are different enough to be treated taxonomically as two distinct varieties, namely D. stramonium var. stramonium and D. stramonium var. tatula.


2019 ◽  
Vol 99 (2) ◽  
pp. 138-151 ◽  
Author(s):  
Ashok Somalraju ◽  
Kaushik Ghose ◽  
David Main ◽  
Benoit Bizimungu ◽  
Bourlaye Fofana

Mutations are the key drivers for evolution and diversification in plants. In varietal selection, sources for variation are always sought as starting breeding materials. Thus, in the absence of desired natural variations in breeding populations, targeted or random mutagenesis is applied to induce variations. Cultivated potato (Solanum tuberosum L.) is autotetraploid crop species with a narrow and highly heterozygous genetic base, and the complexity of its genome makes its genetic studies more difficult. In the current study, induced mutagenesis was performed in diploid potato using ethyl methane sulfonate (EMS) to enlarge the genetic variability for its use as pre-breeding materials in both polyploid and diploid potato breeding. As starting materials, true potato seeds were treated with 1.2% EMS for 4–6 h along with untreated seeds as controls. A large variation in terms of germination rate, plant, flower, and tuber phenotype was observed in EMS-treated plants compared with their untreated counterparts. In particular, abnormal phenotypes including twisted stem, partial and (or) completely chlorotic leaves and stems, variations in stem colour and weak-stemmed plants with lateral growth habit as well as plants with determinate growth habit were observed along with normal plant characteristics. Moreover, variations in flower colour and tuber colour, shape, and size, as well as yield potential, were observed in EMS-treated lines. The reported phenotypic characterization of EMS mutagenized diploid potato collection is to our knowledge the first in its kind and represents a premium genetic resource for potato breeding programs and plant biologists for genes functional characterization in potato.


2018 ◽  
Vol 2018 ◽  
pp. 1-11
Author(s):  
Ann Kangai Munene ◽  
Felister Nzuve ◽  
Jane Ambuko ◽  
Damaris Odeny

Knowledge on phenotypic diversity among existing spider plant accessions is a milestone in the improvement of spider plant, which is a highly nutritious indigenous vegetable in Kenya. A study involving agronomic and morphological characterization of 49 spider plant accessions assembled from East and South Africa was carried out at the University of Nairobi Field Station for two seasons in a randomized complete block design with three replications. Phenotypic data was collected on growth habit, flower, petiole, leaf and stem colour, petiole, leaf and stem hairiness, number of leaves per plant, plant height, number of primary branches, leaf length and width, single leaf area, and chlorophyll content according to FAO descriptors with modifications. Data was analyzed using both DARwin software V6 and Genstat Version 14. We observed significant differences among the traits implying great genetic variability among the evaluated spider plant accessions. The high genetic variation was further validated using the Unweighted Pair Group Method with Arithmetic mean (UPGMA) clustering method with stem and flower colour as key traits. The 49-spider plant accessions were clustered into 2 major groups, each consisting of Kenyan and South African accessions. Stepwise regression revealed that plant height had the most influence on yield in terms of number of leaves per plant. We also observed high heritability for several traits including days to flowering (91%), number of leaves per plant (99%), plant height (99%), number of primary branches (94%), chlorophyll content (94%), and single leaf area (87%). Our results reveal the high genetic variation between different spider plant accessions, especially from different regions of Africa that could be further exploited to improve productivity in the plant. The high heritability of most of the yield related traits is promising for improving yield in the crop through direct selection.


2017 ◽  
Vol 10 (2) ◽  
pp. 77
Author(s):  
Untung Setyo-Budi ◽  
B. Heliyanto ◽  
NFN Sudjindro

<p><strong>Abstract</strong></p><p>Exploration was conducted to be used for genetic variation improvement of abaca germplasm. It was performed at Sangir Besar Island in Sangihe Achipilago and Karakelang Island in the Talaud Archipilago, both of them were located in the teritorial of Sangihe-Talaud District of North Sulawesi Province, in September 1999. Result indicated that Sangihe-Talaud District had many species of abaca introduced from Philippina. Fifteen accessions of abaca were collected. The difference characters of each accession were identified by stem colour, bloom shape and colour, stem height and diameter, and fibre strength. Those accessions were conserved in the RITFC&amp;rsquo;s Experimental Garden for characterization and evaluation.</p><p><strong>Abstrak</strong></p><p>Untuk memperluas keragaman sumber daya genetik tanaman abaca, telah dilakukan eksplorasi di Pulau Sangir Besar di gugusan Kepulauan Sangihe, dan di Pulau Karakelang di gugusan Kepulauan Talaud, Kabupaten Sangihe-Talaud, Propinsi Sulawesi Utara, pada bulan September 1999. Dari eksplorasi tersebut diketahui bahwa di Kabupaten Sangihe-Talaud, Propinsi Sulawesi Utara khususnya di Pulau Sangir Besar dan Pulau Karakelang, banyak terdapat jenis abaca yang diduga berasal dari Filipina. Diperoleh 15 aksesi abaca dari kedua pulau tersebut. Perbedaan yang mencolok dari masing-masing aksesi terletak pada karakter warna batang, warna dan bentuk jantung, tinggi dan diameter batang serta kekuatan seratnya. Aksesi-aksesi tersebut ditanam di kebun plasma nutfah Balittas untuk karakterisasi dan evaluasi.</p>


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