scholarly journals GENETIC VARIABILITY AND POPULATION DIFFERENTIATION OF OPISTHORCHIS FELINEUS (TREMATODA) FROM WEST SIBERIA RIVERS

2012 ◽  
Vol 10 (3) ◽  
pp. 10-16
Author(s):  
Oksana N Zhigileva ◽  
Daria V Zenovkina ◽  
Tatyana A Zamyatina

Genetic variability in Opisthorchis felineus from 6 Western Siberia rivers was studied using allozyme and multilocus DNA markers. Genetic subdivision of populations and the spatial genetic variability in O. felineus maritas were found to be the same when using two methods of analysis, but differed from these indices in metacercariae. Metacercariae from ide, dace and roach were not genetically different, indicating the absence of hostal subpopulations of the parasite. Low level of O. felineus genetic variability is not consistent with a pronounced population structure of intermediate hosts — Cyprinid fish.

2020 ◽  
Vol 49 (6) ◽  
pp. 1083-1092
Author(s):  
S Goitom ◽  
M.G. Gicheha ◽  
F.K. Njonge ◽  
N Kiplangat

Indigenous cattle play a vital role in subsistence and livelihood of pastoral producers in Eritrea. In order to optimally utilize and conserve these valuable indigenous cattle genetic resources, the need to carry out an inventory of their genetic diversity was recognized. This study assessed the genetic variability, population structure and admixture of the indigenous cattle populations (ICPs) of Eritrea using a genotype by sequencing (GBS) approach. The authors genotyped 188 animals, which were sampled from 27 cattle populations in three diverse agro-ecological zones (western lowlands, highlands and eastern lowlands). The genome-wide analysis results from this study revealed genetic diversity, population structure and admixture among the ICPs. Averages of the minor allele frequency (AF), observed heterozygosity (HO), expected heterozygosity (HE), and inbreeding coefficient (FIS) were 0.157, 0.255, 0.218, and -0.089, respectively. Nei’s genetic distance (Ds) between populations ranged from 0.24 to 0.27. Mean population differentiation (FST) ranged from 0.01 to 0.30. Analysis of molecular variance revealed high genetic variation between the populations. Principal component analysis and the distance-based unweighted pair group method and arithmetic mean analyses revealed weak substructure among the populations, separating them into three genetic clusters. However, multi-locus clustering had the lowest cross-validation error when two genetically distinct groups were modelled. This information about genetic diversity and population structure of Eritrean ICPs provided a basis for establishing their conservation and genetic improvement programmes. Keywords: genetic variability, molecular characterization, population differentiation


2014 ◽  
Vol 51 (4) ◽  
pp. 309-317 ◽  
Author(s):  
O. Zhigileva ◽  
V. Ozhireľev ◽  
T. Stepanova ◽  
T. Moiseenko

AbstractGenetic variability of West Siberian populations of Opisthorchis felineus and two species of cyprinid fish, its second intermediate hosts, was studied by isozyme analysis. Low levels of allozyme variation and genetic differentiation in O. felineus from the Ob-Irtysh focus of opisthorchiasis were detected. The proportion of polymorphic loci was 21.1 %, the average observed heterozygosity (Hobs) was 0.008, and expected heterozygosity (Hexp) was 0.052. For most loci in O. felineus deficit of heterozygotes (FIS = 0.7424) was observed. A comparison of population genetic structure of fish and parasites showed they were not congruent. Estimates of genetic differentiation of the parasite were smaller than for the fish — its intermediate host. Migration and population structure of the second intermediate hosts do not play an important role in formation of the population-genetic structure of O. felineus in the Ob-Irtysh focus of opisthorchiasis.


2016 ◽  
Vol 3 (3) ◽  
pp. 421-429 ◽  
Author(s):  
Сербина ◽  
E. Serbina

Objective of research: to perform the analysis of long-term (15 annum) dynamics of Bithyniidae snails infected by trematode parthenites from the Chany Lake, the biggest lake in the south of Western Siberia. Materials and methods: The Bithyniidae snails examined in the lake-river systems Chany Lake in 1994-2013 (in the middle reaches and in the estuary of the Kargat River) and in the Zolotye Rossypi Bay and the Malye Chany Lake. The Bithyniidae snails were collected from May to September (twice in any ten days) by hand from 4–6 plots of 0.25 m2 at a depth of 0.1–0.7 m. In total, 8,316 Bithynia troscheli (Paasch, 1842) and 766 В. tentaculata (L., 1758) were examined. Identification of parthenitae trematode was based on observation when mature cercariae were capable of leaving the shell of the host snail on their own. Results and discussion: In Bithyniidae snails, we found parthenites from trematodes from 12 families Cyathocotylidae Mühling, 1898 Poche, 1925; Prosthоgonimidae Luhe, 1909; Pleurogenetidae Looss, 1898; Lecithodendriidae Odhner, 1911; Microphallidae (Ward, 1901) Travassos, 1920; Plagiorchiidae Lühe, 1901 Echinostomatidae (Looss 1899) Dietz, 1909 Odhner 1910); Psilostomidae (Looss 1900) Odhner 1913; Notocotylidae Luhe, 1909; Monorchiidae Odhner, 1911; Cyclocoelidae Kossack, 1911 и Opisthorchidae (Lass, 1899) Braun, 1901. The prevalence of bithyniid snails infected by trematode parthenites varied from 1,6% to 24,1% in different years The double infection by trematode parthenites was found in 0,96% bithyniid snails from estuary of the Kargat River; 4,45% in the Malye Chany Lake, and 26,6%, in the Zolotye Rossypi Bay. The cercariae of Opisthorchidae family in four annum of the fifteen detected. The prevalence of bithyniid snails infected by trematode parthenites from Opisthorchis felineus (Rivolta, 1884) and Metorchis bilis (Braun, 1890) was observed in Chany Lake systems for the first time. Both species (O. felineus and M. bilis) of trematodes have danger to human health and causes very dangerous disease, opisthorchiasis and metorchiasis.


2018 ◽  
Vol 51 ◽  
pp. 185-192
Author(s):  
S. Kruhlyk ◽  
V. Dzitsiuk ◽  
V. Spyrydonov

Genetic variability of domestic dogs is a source for effective process of breed formation and creating unique gene complexes. In the world, for preservation of genetic resources of dogs, there are dog training associations which have great confidence: American Club Dog Breeders (AKC), the British Kennel Club (KC) and the Federation Cynologique Internationale (FCI), aimed at protecting breeding dogs, standards creation, registration of a breed, and issuance of accurate pedigrees. Evaluation of the genetic diversity of dog breeds is able to significantly complement and improve their breeding programs. Since breeds of dog differ in morphological and economic characteristics, the problem of finding of the breed features in the genome of animals is becoming more topical. From this point of view, French Bulldog is an interesting breed of dog (FRANC.BULLDOGGE, FCI standard number 101) which belongs by the classification of breeds, adopted in FCI, to the group IX – a dog-companion for health and fun, but to a subgroup of fighting dogs of a small format. French Bulldog breed has been researched slightly not only in Ukraine and also abroad, as the main work of all dog association is focused on solving theoretical and practical issues of breeding, keeping, feeding, veterinary protection and others. The study was conducted at Research Department of Molecular Diagnostic Tests of Ukrainian Laboratory of Quality and Safety of Agricultural Products. 33 animals of French Bulldog breed, admitted to use in dog breeding of Ukrainian Kennel Union (UKU), were involved for the genetic analysis using DNA markers. The materials of the research were buccal epithelial cells, selected before the morning feeding of animals by scraping mucous membrane of oral cavity with disposable, dry, sterile cotton swab. Genomic DNA was extracted using KIT-set of reagents for DNA isolation according to the manufacturer's instructions. PEZ1, PEZ3, PEZ6, PEZ8, FHC 2010, FHC 2054 markers, recommended by International Society for Animal Genetics (ISAG), ACN, КC and FCI, were used for research. As a result of research 25 alleles for all the loci were detected in the experimental sample of dogs. The average number of alleles at the locus Na, obtained by direct counting, was 4.16. The most polymorphic loci for this breed were PEZ6 and PEZ3 with 8 and 6 allelic variants. Monomorphic loci were PEZ8 and FHC 2054 which had 4 and 3 alleles and the lowest level of polymorphism was observed for PEZ 1 and FHC 2010 loci in which only 2 alleles were identified. On analyzing the molecular genetic characteristics of dogs of French Bulldog breed, we found a high variability of genotype on rare alleles, which included alleles: M, C, D, E, J, K, L, O, N and representing 60% of the total number of the identified alleles. C, D, E alleles for PEZ3 locus and O allele at PEZ6 locus are unique to the sampling of dogs because they are not repeated in other loci. Typical alleles: N, F, R, I, P, K, M are 40% of the total. But F, R alleles for PEZ3 locus and P allele for locus PEZ6 are not repeated either in standard allelic variants or in rare one, indicating a high information content of these alleles and loci to be used for further monitoring of allele pool, genetic certification and identification of dogs. Microsatellite DNA loci were analyzed as a result of investigations of French Bulldogs and the most informative: PEZ3, PEZ6 and PEZ8 were found, which have high efficiency in individual and breed certification of dogs due to high variability. These data allow further monitoring of the state of genetic diversity of the breed and the development of measures for improvement of breeding to preserve the structure of breeding material. The study of individual and population genetic variability is advisable to continue for breeding of French Bulldogs "in purity" and preserving valuable gene complexes. The results are the basis for further monitoring of the proposed informative panels of microsatellite DNA markers for genotyping dog of French Bulldog breed and their complex evaluation.


2010 ◽  
Vol 3 (1) ◽  
pp. 1-3 ◽  
Author(s):  
A. V. Polyakov ◽  
A. V. Katokhin ◽  
T. A. Bocharova ◽  
K. V. Romanov ◽  
M. N. L’vova ◽  
...  

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