scholarly journals ISOLATION AND IDENTIFICATION OF PHYTOPATHOGENIC FUNGI FROM INFECTED PLANT PARTS

Author(s):  
R. Thilagam ◽  
G. Kalaivani ◽  
N. Hemalatha

Objective: The present study deals with the isolation and identification of phytopathogenic fungi. The fungal isolates were Alternaria spp (Tomato early blight), Fusarium oxysporum (Fusarium wilt), Fusarium solani (daming off and root rot), Aspergillus flavus (Ear rot) and Collectotricumspp (Anthracnose).Methods: They were isolated from infected plant parts and were identified on the basis of colony morphology andlacto phenol cotton blue (LPCB) stains were used to identifymicroscopic examination of spore structures. Pure cultures of the isolates were sub cultured and transferred onto differential media; potato dextrose agar, malt extract agar, czapek yeast extract agar and czapek dox agar for species identification using macro morphological characteristicsThe morphological characteristics of these fungal elements showed various kinds of spores have been identified up to genus/species level.Results: This study proves rapid and less expensive techniques to validate a primary alarm of contamination.Conclusion: The fivefungus which were isolated from different plant parts were very effective in distruction of the plant and found that the producionwere reduced due to the infection. This rapid and less expensive techniques to validate a primary alarm of contamination.

Plant Disease ◽  
2007 ◽  
Vol 91 (11) ◽  
pp. 1517-1517 ◽  
Author(s):  
F. M. Grasso ◽  
A. Pane ◽  
S. O. Cacciola

During 2006, in a garden in the Mount Etna Piedmont, eastern Sicily (Italy), a 40-year-old specimen of Canary Island date palm (Phoenix canariensis hort. ex Chabaud) with a trunk circumference at breast height of 220 cm showed a rotted lesion with a viscous, brown ooze at the stem base and root initials. The lesion extended to approximately one-third of the trunk circumference. Trunk excavation exposed a wet rot of internal tissues, a cream-colored mycelial mat, and a mushroom-like smell. Although the rot spread inward (approximately 25 cm deep) with decay of nonlignified ground tissues and blackening of wood fibers, the palm did not show symptoms on the canopy. Conversely, ferns, apricot, and cedar trees growing at the same site had died from Armillaria rot over the last 10 years (2). In late autumn, clumps of honey mushroom-like sphorophores with a prominent annulus encircling the stalk formed at the base of the trunk. The spore print of the basidiocarp was light cream. The morphology of 100 basidiospores was determined microscopically. The basidiospores were smooth, elliptical, hyaline, and measured 7 to 9.5 × 5 to 7 μm. The fungus was isolated from diseased tissues on selective benomyl-dichloran medium (3) and was transferred to 2% malt extract agar where it formed ribbon-shaped, fast-growing, and profusely branching rhizomorphs. Armillaria mellea (Vahl.) P. Kumm. was identified on the basis of cultural and morphological characteristics. Identification was confirmed by electrophoresis of mycelial proteins and isozymes in polyacrylamide and starch slab gels (1,2). The electrophoretic patterns of the isolate from P. canariensis were identical to those of reference isolates of A. mellea from grapevine and fern isolated previously at the same site (2). The pathogenicity of the A. mellea isolate from palm (A-palm5) was tested on 20 3-year-old potted seedlings of P. canariensis grown in a greenhouse at 24 ± 4°C. Seedlings were inoculated with wood pieces of holly oak (Quercus ilex L.) colonized by the fungus (two pieces for each seedling) (4). Ten noninoculated plants served as controls. After 12 months, mycelial fans colonizing the root initials, the base of the stem, and the leaf stalks were observed on 14 inoculated seedlings. Although only four infected seedlings showed decline symptoms, the fungus was reisolated from all inoculated plants. No infections were observed in control plants. To our knowledge, this is the first report of Armillaria butt rot on a palm in Europe. References: (1) M. Bragaloni et al. Eur. J. For. Pathol. 27:147, 1997. (2) S. Grasso et al. Plant Dis. 84:592, 2000. (3) T. C. Harrington et al. Armillaria. Page 81 in: Methods for Research on Soilborne Phytopathogenic Fungi. The American Phytopathological Society, St. Paul, MN, 1992. (4) R. Metaliaj et al. Phytopathol. Mediterr. 45:3, 2006.


2016 ◽  
Vol 22 ◽  
pp. 69-76
Author(s):  
AU Ahmed ◽  
S Zaman ◽  
MA Mazid ◽  
MM Rahman ◽  
MMR Sarkar ◽  
...  

Context: To investigate the morphological and pathological information on causal organism Botrytis cinerea for better understanding of the infection process and controlling outbreaks of the most damaging disease, Botrytis Gray Mold (BGM),of chickpea.Objectives: To study the cultural and morphological characteristics and growth requirements of Botrytis cinerea Pers. ex. Fr. This study was also aimed to know about the cytological and genetic behavior of B. cinerea in relation to its pathogenicity and the infection process on chickpea.Materials and Methods: A total of 83 isolates of Botrytis cinerea Pers. ex. Fr. collected from the major chickpea growing areas of Bangladesh were studied under 5 and 2 different groups based on their cultural and morphological characteristics, respectively. Four different types of isolates were observed and characterized considering the arrangement of sclerotia by growing them on PDA. Cultural characteristics such as colony color, shape, margin and texture of B. cinerea isolates were observed on the prepared PDA medium. Morphological characteristics in terms of sclerotia color, shape and size, ability of sclerotia production and their arrangement were observed on PDA medium after three days of incubation at 20°C. The prepared samples were placed in a platinum coater providing 10 mA current flow and then placed into the Scanning Electron Microscope (SEM) for obtaining the image. The conidial observation was taken using aqua suspension under the fluorescence microscope at 19V/100W. SEM observation was made to study the infection process of B. cinerea. Data on quantitative and qualitative cultural characteristics were put into analytical software 'SPSS 11.5 for Windows' and nonhierarchical clustering was performed.Results: The mean sizes of five isolates of B. cinerea were 8.02-12.3x 5.1-9.0 ?m (volume 158.12-445.38 ?m3). The pathogen B. cinerea grew well on malt-extract agar (MEA) and chickpea dextrose agar (CDA) medium. The highest (81.26 mm) average mycelial radial growth was obtained on MEA followed by CDA (81.11 mm). Maximum disease in the shortest incubation period was produced with the inoculum concentration of 2.5×104. More pathogenicity and higher disease score was performed by the isolates containing higher mean number of nucleus per conidia than the isolates containing lower values. Optimum temperature and incubation time for conidial germination was observed at 20°C and 24 h, respectively. More than 90% relative humidity was needed for the germination of B. cinerea conidia. B. cinerea survived in all plant parts up to next cropping season. Sclerotia of B. cinerea were also found to survive in the soil up to 9 months. All the 5 isolates of B. cinerea remained viable after 3 years of storage in sterile water at -80°C and in sand at 4°C with same pathogenicity.Conclusion: The cyto-pathological observations including cultural and morphological information of the causal pathogen B. cinerea might be useful in controlling the outbreaks of the disease BGM and ultimately reducing the yield loss of the valuable crop chickpea.J. bio-sci. 22: 69-76, 2014


Topola ◽  
2020 ◽  
pp. 5-13
Author(s):  
Sheillah Cherotich ◽  
Japhet Muthamia ◽  
Jane Njuguna ◽  
Alice Muchugi ◽  
Daniel Otaye ◽  
...  

A study was conducted in Eastern Kenya to assess incidence and severity of Adansonia digitata and Sclerocarya birrea diseases under seasonal variations, and to assess associated fungal genera and their distribution. Asymptomatic and symptomatic tissues were sampled from 175 randomly selected trees. Isolations were done from leaves, twigs and bark following laboratory standard procedures. Samples were plated on Malt Extract Agar (MEA) and incubated at 25°C for 7 days. Fungal colonies were evaluated, and pure cultures were obtained using a single hypha. Fungal pathogens were identified based on morphological characteristics of cultures and spores. Statistical analysis were done using GENSTAT version 18. Fungal morphotypes isolated included: Pestalotia (39.0%), Botryosphaeria (41.0%), Fusarium (12.0%), Alternaria (7.9%) and Cladosporium (0.1%). There were no stastically significant differences (p<0.01) in number of isolated fungi among different plant samples and sampling locations. This is the first detailed study on fungal diversity associated with diseased and healthy A. digitata and S. birrea trees in Kenya and it clearly indicates the need for detailed studies of fungal species isolated to develop mitigation strategies.


Plant Disease ◽  
2012 ◽  
Vol 96 (2) ◽  
pp. 293-293 ◽  
Author(s):  
A. Saroj ◽  
A. Kumar ◽  
N. Qamar ◽  
M. Alam ◽  
H. N. Singh ◽  
...  

Withania somnifera (Ashwagandha) is native to India and commercially cultivated for the production of root withanolides that have anticarcinogenic properties. A disease appeared on plantings of W. somnifera during the 2010 monsoon at the CIMAP and in adjoining areas of northern India. Symptoms first appeared as water-soaked lesions on leaves and stems that progressed to a wet rot. Mature lesions harbored black fructifications of the suspect pathogen. Pathogen isolations were done by placing pieces of infected tissues on potato dextrose agar. A fungus tentatively identified as a Choanephora sp. that produced white aerial mycelia that later turned pale yellow was consistently isolated from infected plant parts. Mycelia were hyaline and nonseptate. Sporangiophores bearing sporangiola were erect, hyaline, unbranched, apically dilated to form a clavate vesicle from which arose dichotomously branched distally clavate secondary vesicles. Sporangiola were indehiscent, ellipsoid, brown to dark brown with distinct longitudinal striations, and measured 12 to 20 × 6 to 12 μm. Sporangia were multispored, spherical, initially white to yellow and pale brown to dark brown at maturity, and measured 40 to 160 μm. Sporangiospores from sporangia were ellipsoid to broadly ellipsoid, brown to dark brown, indistinctly striate with fine hyaline polar appendages, and measured 16 to 20 × 8 to 12 μm. On the basis of the cultural as well as morphological characteristics and description in the monograph by Kirk (2), the fungus was identified as a Choanephora sp. The identification was also confirmed by IMTECH, Chandigarh, India with Accession No. MTCC-10731. The species was later characterized as Choanephora cucurbitarum (Berk. & Ravenel) Thaxt (GenBank Accession No. AB470642) by using universal primers ITS-1 and ITS-4. Its sequence comprising of 18S rRNA partial, complete ITS 1, 5.8S rRNA, ITS 2, and 28S rRNA partial was submitted to NCBI GenBank with Accession No. JN639861. Pathogenicity of the fungus was established on five healthy plants by artificial inoculation with spray of an aqueous spore suspension containing 106 spores/ml. Plants sprayed with sterile distilled water were used as controls. Both inoculated and control plants were kept in a humidity chamber (96%) for 3 days and thereafter placed in the glasshouse at 28 ± 2°C. Initial symptoms developed in 2 to 3 days while typical disease symptoms appeared on all the inoculated plants after 7 to 10 days. Control plants were free from infection. The reisolation from artificially infected plants again yielded a Choanephora sp., thus fulfilling Koch's postulates. W. somnifera cultivation has been affected by root rot and wilt caused by Fusarium solani and leaf spot caused by Alternaria dianthicola (3). The occurrence of a Choanephora sp. was reported on periwinkle, petunia (1), and Boerhavia diffusa (4). However, to our knowledge, incidence of this pathogen on W. somnifera has not been reported so far. Thus, wet rot of W. somnifera caused by C. cucurbitarum is a new report from India and worldwide. References: (1) G. E. Holcomb. Plant Dis. 87:751, 2003. (2) P. M. Kirk. Mycol. Pap. 152:1, 1984. (3) C. K. Maiti et al. Plant Dis. 91:467, 2007. (4) N. Singh et al. New Dis. Rep. 23:29, 2011.


2014 ◽  
Vol 67 ◽  
pp. 116-122 ◽  
Author(s):  
N.T. Amponsah ◽  
M. Walter ◽  
R.W.A. Scheper

European canker pathogen caused by the fungus Neonectria ditissima could not be isolated when infected woody tissues were plated directly onto potato dextrose agar (PDA) malt extract agar (MEA) or acidified PDA (pH 45) However the alternative media water agar (WA) and apple sapamended water agar (ASAWA) were successfully used to isolate the pathogen In the preparation of ASAWA green shoots of 1yearold fresh Scilate apple were frozen overnight then allowed to thaw The tissues were then centrifuged and the sap collected to prepare the medium Neonectria ditissima could be isolated from both symptomatic and asymptomatic apple tissues on both WA and ASAWA Both media supported the production of large numbers of conidia in vitro with more conidia being produced on ASAWA than on WA The conidia produced in vitro had morphological characteristics and pathogenicity similar to those produced in the field


Plant Disease ◽  
2007 ◽  
Vol 91 (11) ◽  
pp. 1516-1516 ◽  
Author(s):  
D. Novotný ◽  
I. Křížková ◽  
J. Krátká ◽  
J. Salava

Colletotrichum acutatum J. H. Simmond is the causal agent of anthracnose rot and strawberry blackspot. This pathogen is listed by the EPPO as a regulated (formerly quarantined) organism for all European countries and is widely distributed throughout Europe (e.g., the United Kingdom, France, and Germany) (2). In the autumn of 2005, typical symptoms of anthracnose caused by C. acutatum (circular, dark, and sunken spots on fruit, dark, sunken lesions on petioles, and withering of the leaf, buds, and flowers) were repeatedly observed on field-grown strawberry plants in the Mělník Region of central Bohemia and Břeclav Region in southern Moravia, Czech Republic. Strawberry fruits and petioles showing typical symptoms were surface sterilized (30 s in 70% ethanol, 1 min in 10% NaOCl, and 15 s in 70% ethanol), rinsed in sterile water, dissected under aseptic conditions, and plated on 2% malt extract agar or placed in wet chambers and incubated at room temperature (18 to 20°C) for 10 days. All isolated strains were independently identified by morphological characteristics, plate-trapped antigen enzyme-linked immunosorbent assay (PTA-ELISA) (1), and PCR with the C. acutatum-specific primers ITS4 and CaInt2 (3). Morphological studies of C. acutatum were carried out on potato dextrose agar (4). The colonies were white, cream, grayish, or rose-orange before sporulation and the colony reverse was cream to orange with brown spots. The mycelial growth rate was 7.5 mm per day at 25°C. The conidia were one-celled, hyaline, cylindrical, 11.3 to 19.7 × 3.6 to 5.5 μm, and the majority of conidia were pointed at either or both ends. The appresoria were brown, globose to ellipsoidal, 5.0 to 7.5 × 5.0 to 6.2 μm, and the sclerotia were absent. Ten strawberry plants with green fruits of each cultivar Elsanta and Kama were sprayed with 500 ml of suspension of C. acutatum conidia (104 conidia per ml). This test was carried out in the glasshouse under quarantine conditions at 20 to 25°C. C. acutatum caused withering of the flowers or dark brown spots on green fruits on five plants of cv. Elsanta and on four plants of cv. Kama after a 6-week incubation period. Isolation and identification of the pathogen from the diseased tissues were done as described above. C. acutatum was reisolated from three fruits, four leaf blades, and four petioles from five plants of cv. Elsanta and four fruits, four leaf blades, and two petioles from four plants of cv. Kama. The fungus was not reisolated from the control strawberry plants. In three cases, the pathogen was detected in the crown of plants of cv. Elsanta by PCR and ELISA. References: (1) Anonymous. OEPP/EPPO Bull. 34:155, 2004. (2) I. M. Smith and L. M. F. Charles, eds. Distribution Maps of Quarantine Pests for the European Union and for the European and Mediterranean Plant Protection Organization. CABI Publishing, Wallingford, UK, 1998. (3) S. Sreenivasaprasad et al. Plant Pathol. 45:650, 1996. (4) P. Talhinhas et al. Phytopathology 92:986, 2002.


1978 ◽  
Vol 56 (1) ◽  
pp. 57-62 ◽  
Author(s):  
Felix Bärlocher ◽  
J. J. Oertli

Dead needles of Abies alba, Pinus sylvestris, P. leucodermis, and Sequoia gigantea were immersed in a stream for 28 days and then examined for conidiophores of aquatic hyphomycetes. Contrary to statements in the literature, these fungi were found to colonize untreated needles. However, numbers of species and conidiophores were significantly higher on needles treated with steam before immersion than on untreated needles; both values were also higher on cut surfaces (mesophyll) than on intact surfaces (epidermis with cuticle) of longitudinally halved needles.Addition of untreated needle powder (Sequoia, P. leucodermis) to malt extract agar depressed linear growth of pure cultures of five aquatic hyphomycetes. The inhibition persisted when a 0.2-μm membrane filter was placed between medium and fungal cultures. On water agar, by itself unsuitable for fungal growth, low doses of needle powder allowed growth of the same fungi. At higher doses, inhibition again became predominant. Steam distillation of needle powder yielded three fractions: solid residue, soluble residue, and steam distillate. Steam distillate did not influence fungal growth on the two media, while the other two fractions supported growth on water agar but did not lead to a clear dosage–effect curve on malt extract agar.


1969 ◽  
Vol 15 (12) ◽  
pp. 1365-1371 ◽  
Author(s):  
K. -J. Cheng ◽  
G. A. Jones ◽  
F. J. Simpson ◽  
M. P. Bryant

Fifteen strains of bacteria capable of degrading rutin anaerobically were isolated from bovine rumen contents and identified by morphological and biochemical evidence as strains of Butyrivibrio sp. Three cultures from a laboratory collection of 53 strains of rumen bacteria also used rutin anaerobically. Two, Butyrivibrio fibrisolvens D1 and Selenomonas ruminantium GA192, cleaved the glycosidic bond of rutin and fermented the sugar but did not degrade the insoluble aglycone produced; the third strain, Peptostreptococcus sp. B178, degraded the substrate to soluble products. Butyrivibrio sp. C3 degraded rutin, quercitrin, and naringin to water-soluble products, showing that the organism cleaved the heterocyclic ring of these compounds. Butyrivibrio sp. C3 fermented the sugar moiety of hesperidin but did not cleave the heterocyclic ring. It did not attack quercetin, taxifolin, protocatechuic acid, or phloroglucinol. In a medium containing rumen fluid, Butyrivibrio sp. C3 degraded rutin more than twice as fast as it did in a medium containing enzymatic casein hydrolyzate, volatile fatty acids, yeast extract, and hemin in place of rumen fluid.The observations reported in this paper are believed to represent the first recorded demonstration of degradation of the heterocyclic ring structure of rutin and other bioflavonoids in pure cultures of anaerobic bacteria.


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