scholarly journals Genome-wide evolutionary signatures of climate adaptation in spotted sea bass inhabiting different latitudinal regions

Author(s):  
Baohua Chen ◽  
Zhixiong Zhou ◽  
Yue Shi ◽  
Jie Gong ◽  
Chengyu Li ◽  
...  

Temperature is an important climatic factor that shapes the distribution of eurythermal species. Thermal adaptation of species is important to both evolutionary biology and climate-change biology because it frequently leads to latitudinal gradients of various phenotypes among populations. Spotted sea bass (Lateolabrax maculatus) has a broad latitudinal distribution range along the marginal seas of the Northwest Pacific, providing an excellent teleost model for climate adaptation studies. We generated over 8.57 million SNP loci using whole genome re-sequencing from 100 samples collected at 14 geographic loci. We built the phylogeographic structure and demographic history of L. maculatus and determined sea surface temperature as the key environmental factor and major driving force for genetic divergence and local adaptation. We also identified distinct selective signatures and functional genes underlying adaptive mechanisms and ecological tradeoffs in the southernmost and northernmost populations inhabiting distinct climatic and latitudinal zones. The results offer an opportunity to better understand the genetic basis of the phenotypic variation in eurythermal fishes inhabiting different climatic regions.

LWT ◽  
2021 ◽  
pp. 111521
Author(s):  
Jiali Chen ◽  
Weibin Bai ◽  
Dongbao Cai ◽  
Zhiling Yu ◽  
Baojun Xu

2010 ◽  
Vol 60 (4) ◽  
pp. 449-465
Author(s):  
Wen Longying ◽  
Zhang Lixun ◽  
An Bei ◽  
Luo Huaxing ◽  
Liu Naifa ◽  
...  

AbstractWe have used phylogeographic methods to investigate the genetic structure and population history of the endangered Himalayan snowcock (Tetraogallus himalayensis) in northwestern China. The mitochondrial cytochrome b gene was sequenced of 102 individuals sampled throughout the distribution range. In total, we found 26 different haplotypes defined by 28 polymorphic sites. Phylogenetic analyses indicated that the samples were divided into two major haplogroups corresponding to one western and one eastern clade. The divergence time between these major clades was estimated to be approximately one million years. An analysis of molecular variance showed that 40% of the total genetic variability was found within local populations, 12% among populations within regional groups and 48% among groups. An analysis of the demographic history of the populations suggested that major expansions have occurred in the Himalayan snowcock populations and these correlate mainly with the first and the second largest glaciations during the Pleistocene. In addition, the data indicate that there was a population expansion of the Tianshan population during the uplift of the Qinghai-Tibet Plateau, approximately 2 million years ago.


2018 ◽  
Vol 35 (2) ◽  
pp. 551-557 ◽  
Author(s):  
Wenhao Wang ◽  
Hongbiao Dong ◽  
Yongxu Sun ◽  
Ming Cao ◽  
Yafei Duan ◽  
...  

2021 ◽  
Vol 4 (1) ◽  
pp. 946-954
Author(s):  
Nguyen Van Giang ◽  
Phan Thanh Nghi ◽  
Nguyen Bich Hanh

Spotted sea bass (Lateolabrax maculatus, McClelland, 1844) is a species belonging to the genus Lateolabrax (Lateolabracidae), and is characterized by the many distinct black spots on the bodies of mature fish. For the first time, six specimens have been recorded in Quang Ninh province. The specimens were collected from Luon Cave in Bai Tu Long National Park in May-June 2019. The new specimens collected from Quang Ninh, Vietnam are different from the recorded specimens from Japan, Korea, Taiwan, and China in terms of lateral line scales (LLS) as the samples collected in Quang Ninh, Vietnam have 94-97 scales and the samples collected from the other countries have 66-82 scales. Phylogenetic analysis of the 16S rDNA sequence confirmed that all of the samples collected in Quang Ninh, Vietnam belonged to the species of spotted sea bass.


2018 ◽  
Vol 49 (11) ◽  
pp. 3517-3528 ◽  
Author(s):  
Meili Chi ◽  
Meng Ni ◽  
Yongyi Jia ◽  
Zhimin Gu ◽  
HaiShen Wen

2020 ◽  
Vol 51 (9) ◽  
pp. 3495-3505
Author(s):  
Ruipeng He ◽  
Yuepeng Su ◽  
Anli Wang ◽  
Bo Lei ◽  
Kuopeng Cui

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Sara Lado ◽  
Jean Pierre Elbers ◽  
Angela Doskocil ◽  
Davide Scaglione ◽  
Emiliano Trucchi ◽  
...  

AbstractDromedaries have been essential for the prosperity of civilizations in arid environments and the dispersal of humans, goods and cultures along ancient, cross-continental trading routes. With increasing desertification their importance as livestock species is rising rapidly, but little is known about their genome-wide diversity and demographic history. As previous studies using few nuclear markers found weak phylogeographic structure, here we detected fine-scale population differentiation in dromedaries across Asia and Africa by adopting a genome-wide approach. Global patterns of effective migration rates revealed pathways of dispersal after domestication, following historic caravan routes like the Silk and Incense Roads. Our results show that a Pleistocene bottleneck and Medieval expansions during the rise of the Ottoman empire have shaped genome-wide diversity in modern dromedaries. By understanding subtle population structure we recognize the value of small, locally adapted populations and appeal for securing genomic diversity for a sustainable utilization of this key desert species.


2019 ◽  
Vol 20 (12) ◽  
pp. 2907 ◽  
Author(s):  
Jiali Chen ◽  
Muthukumaran Jayachandran ◽  
Wenxia Zhang ◽  
Lingyuqing Chen ◽  
Bin Du ◽  
...  

Sea bass (Lateolabrax maculatus) is a kind of food material commonly consumed in daily life. In traditional Chinese medicinal books, it has been indicated that sea bass can be applied for managing many inflammation-associated conditions. However, the studies on the pharmacological mechanisms of inflammation of sea bass remain scarce. Hence, this study aims to investigate the molecular mechanisms of the anti-inflammatory activity of sea bass. Anti-inflammatory activities of sea bass were assessed using dextran sulfate sodium (DSS)-induced colitis in a mice model and lipopolysaccharide (LPS)-activated macrophages model. Low body weight and short colon length were observed in DSS-fed mice that were significantly recovered upon sea bass treatments. Moreover, the colon histopathology score showed that sea bass-treated mice had decreased crypt damage, focal inflammation infiltration and the extent of inflammation, suggesting that treatment with sea bass could attenuate intestinal inflammation. In addition, the in-vitro study conjointly indicated that sea bass could suppress the inflammatory mediators in LPS-activated macrophage by inhibiting the TLR4-linked pathway. The present findings demonstrated that sea bass has an inhibitory effect on TLR4 signaling; thus, it could be a promising candidate for treating inflammation-associated conditions. A further justification for the clinical application of sea bass in treating inflammation-associated conditions is necessary.


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