scholarly journals Deep Attributed Network Embedding

2018 ◽  
Author(s):  
Hongchang Gao ◽  
Heng Huang
Keyword(s):  
Topological Structure ◽  
Link Prediction ◽  
Network Embedding ◽  
Dimensional Representation ◽  
Attributed Network ◽  
Real World Applications ◽  
Benchmark Datasets ◽  
Node Attributes ◽  
Novel Strategy ◽  
Low Dimensional

Network embedding has attracted a surge of attention in recent years. It is to learn the low-dimensional representation for nodes in a network, which benefits downstream tasks such as node classification and link prediction. Most of the existing approaches learn node representations only based on the topological structure, yet nodes are often associated with rich attributes in many real-world applications. Thus, it is important and necessary to learn node representations based on both the topological structure and node attributes. In this paper, we propose a novel deep attributed network embedding approach, which can capture the high non-linearity and preserve various proximities in both topological structure and node attributes. At the same time, a novel strategy is proposed to guarantee the learned node representation can encode the consistent and complementary information from the topological structure and node attributes. Extensive experiments on benchmark datasets have verified the effectiveness of our proposed approach.

scholarly journals Structural Adversarial Variational Auto-Encoder for Attributed Network Embedding

2021 ◽  
Vol 11 (5) ◽  
pp. 2371
Author(s):  
Junjian Zhan ◽  
Feng Li ◽  
Yang Wang ◽  
Daoyu Lin ◽  
Guangluan Xu
Keyword(s):  
State Of The Art ◽  
Global Information ◽  
Network Embedding ◽  
Sampling Process ◽  
Attributed Network ◽  
Benchmark Datasets ◽  
Adversarial Training ◽  
Low Dimensional ◽  
Embedding Methods ◽  
Local Proximity

As most networks come with some content in each node, attributed network embedding has aroused much research interest. Most existing attributed network embedding methods aim at learning a fixed representation for each node encoding its local proximity. However, those methods usually neglect the global information between nodes distant from each other and distribution of the latent codes. We propose Structural Adversarial Variational Graph Auto-Encoder (SAVGAE), a novel framework which encodes the network structure and node content into low-dimensional embeddings. On one hand, our model captures the local proximity and proximities at any distance of a network by exploiting a high-order proximity indicator named Rooted Pagerank. On the other hand, our method learns the data distribution of each node representation while circumvents the side effect its sampling process causes on learning a robust embedding through adversarial training. On benchmark datasets, we demonstrate that our method performs competitively compared with state-of-the-art models.

scholarly journals Efficient Attributed Network Embedding via Recursive Randomized Hashing

2018 ◽  
Author(s):  
Wei Wu ◽  
Bin Li ◽  
Ling Chen ◽  
Chengqi Zhang
Keyword(s):  
Rooted Tree ◽  
Main Idea ◽  
Network Embedding ◽  
Dimensional Representation ◽  
Substantial Cost ◽  
Structure Information ◽  
Root Node ◽  
Attributed Network ◽  
Low Dimensional ◽  
Embedding Methods

Attributed network embedding aims to learn a low-dimensional representation for each node of a network, considering both attributes and structure information of the node. However, the learning based methods usually involve substantial cost in time, which makes them impractical without the help of a powerful workhorse. In this paper, we propose a simple yet effective algorithm, named NetHash, to solve this problem only with moderate computing capacity. NetHash employs the randomized hashing technique to encode shallow trees, each of which is rooted at a node of the network. The main idea is to efficiently encode both attributes and structure information of each node by recursively sketching the corresponding rooted tree from bottom (i.e., the predefined highest-order neighboring nodes) to top (i.e., the root node), and particularly, to preserve as much information closer to the root node as possible. Our extensive experimental results show that the proposed algorithm, which does not need learning, runs significantly faster than the state-of-the-art learning-based network embedding methods while achieving competitive or even better performance in accuracy. 

scholarly journals Deep attributed network embedding by mutual information maximization

2021 ◽  
Vol 2132 (1) ◽  
pp. 012035
Author(s):  
Wujun Tao ◽  
Yu Ye ◽  
Bailin Feng
Keyword(s):  
Mutual Information ◽  
Network Embedding ◽  
Structure Information ◽  
Attributed Network ◽  
Information Maximization ◽  
Node Attributes ◽  
Real World Datasets ◽  
Low Dimensional ◽  
Mutual Information Maximization ◽  
Node Embeddings

Abstract There is a growing body of literature that recognizes the importance of network embedding. It intends to encode the graph structure information into a low-dimensional vector for each node in the graph, which benefits the downstream tasks. Most of recent works focus on supervised learning. But they are usually not feasible in real-world datasets owing to the high cost to obtain labels. To address this issue, we design a new unsupervised attributed network embedding method, deep attributed network embedding by mutual information maximization (DMIM). Our method focuses on maximizing mutual information between the hidden representations of the global topological structure and the node attributes, which allows us to obtain the node embedding without manual labeling. To illustrate the effectiveness of our method, we carry out the node classification task using the learned node embeddings. Compared with the state-of-the-art unsupervised methods, our method achieves superior results on various datasets.

scholarly journals SNEQ: Semi-Supervised Attributed Network Embedding with Attention-Based Quantisation

2020 ◽  
Vol 34 (04) ◽  
pp. 4091-4098 ◽  
Author(s):  
Tao He ◽  
Lianli Gao ◽  
Jingkuan Song ◽  
Xin Wang ◽  
Kejie Huang ◽  
...  
Keyword(s):  
Link Prediction ◽  
Large Scale ◽  
State Of The Art ◽  
Network Embedding ◽  
Compression Method ◽  
Network Analytics ◽  
Attributed Network ◽  
Large Scale Networks ◽  
Low Dimensional ◽  
Embedding Methods

Learning accurate low-dimensional embeddings for a network is a crucial task as it facilitates many network analytics tasks. Moreover, the trained embeddings often require a significant amount of space to store, making storage and processing a challenge, especially as large-scale networks become more prevalent. In this paper, we present a novel semi-supervised network embedding and compression method, SNEQ, that is competitive with state-of-art embedding methods while being far more space- and time-efficient. SNEQ incorporates a novel quantisation method based on a self-attention layer that is trained in an end-to-end fashion, which is able to dramatically compress the size of the trained embeddings, thus reduces storage footprint and accelerates retrieval speed. Our evaluation on four real-world networks of diverse characteristics shows that SNEQ outperforms a number of state-of-the-art embedding methods in link prediction, node classification and node recommendation. Moreover, the quantised embedding shows a great advantage in terms of storage and time compared with continuous embeddings as well as hashing methods.

scholarly journals Semisupervised Community Preserving Network Embedding with Pairwise Constraints

Complexity ◽  
2020 ◽  
Vol 2020 ◽  
pp. 1-14
Author(s):  
Dong Liu ◽  
Yan Ru ◽  
Qinpeng Li ◽  
Shibin Wang ◽  
Jianwei Niu
Keyword(s):  
Community Structure ◽  
Link Prediction ◽  
Learning Algorithms ◽  
Nonnegative Matrix ◽  
Machine Learning Algorithms ◽  
Network Visualization ◽  
Network Embedding ◽  
Pairwise Constraints ◽  
Node Clustering ◽  
Low Dimensional

Network embedding aims to learn the low-dimensional representations of nodes in networks. It preserves the structure and internal attributes of the networks while representing nodes as low-dimensional dense real-valued vectors. These vectors are used as inputs of machine learning algorithms for network analysis tasks such as node clustering, classification, link prediction, and network visualization. The network embedding algorithms, which considered the community structure, impose a higher level of constraint on the similarity of nodes, and they make the learned node embedding results more discriminative. However, the existing network representation learning algorithms are mostly unsupervised models; the pairwise constraint information, which represents community membership, is not effectively utilized to obtain node embedding results that are more consistent with prior knowledge. This paper proposes a semisupervised modularized nonnegative matrix factorization model, SMNMF, while preserving the community structure for network embedding; the pairwise constraints (must-link and cannot-link) information are effectively fused with the adjacency matrix and node similarity matrix of the network so that the node representations learned by the model are more interpretable. Experimental results on eight real network datasets show that, comparing with the representative network embedding methods, the node representations learned after incorporating the pairwise constraints can obtain higher accuracy in node clustering task and the results of link prediction, and network visualization tasks indicate that the semisupervised model SMNMF is more discriminative than unsupervised ones.

scholarly journals GLEE: Geometric Laplacian Eigenmap Embedding

2020 ◽  
Vol 8 (2) ◽  
Author(s):  
Leo Torres ◽  
Kevin S Chan ◽  
Tina Eliassi-Rad
Keyword(s):  
Link Prediction ◽  
Graph Embedding ◽  
Laplacian Matrix ◽  
Dimensional Representation ◽  
Laplacian Eigenmaps ◽  
New Approach ◽  
Graph Reconstruction ◽  
Node Similarity ◽  
Distance Minimization ◽  
Low Dimensional

Abstract Graph embedding seeks to build a low-dimensional representation of a graph $G$. This low-dimensional representation is then used for various downstream tasks. One popular approach is Laplacian Eigenmaps (LE), which constructs a graph embedding based on the spectral properties of the Laplacian matrix of $G$. The intuition behind it, and many other embedding techniques, is that the embedding of a graph must respect node similarity: similar nodes must have embeddings that are close to one another. Here, we dispose of this distance-minimization assumption. Instead, we use the Laplacian matrix to find an embedding with geometric properties instead of spectral ones, by leveraging the so-called simplex geometry of $G$. We introduce a new approach, Geometric Laplacian Eigenmap Embedding, and demonstrate that it outperforms various other techniques (including LE) in the tasks of graph reconstruction and link prediction.

scholarly journals Proximity Measures as Graph Convolution Matrices for Link Prediction in Biological Networks

2020 ◽  
Author(s):  
Mustafa Coşkun ◽  
Mehmet Koyutürk
Keyword(s):  
Link Prediction ◽  
Similarity Measures ◽  
Graph Representation ◽  
Supplementary Information ◽  
Great Promise ◽  
Network Embedding ◽  
Common Neighbor ◽  
Node Similarity ◽  
Topological Characteristics ◽  
Low Dimensional

AbstractMotivationLink prediction is an important and well-studied problem in computational biology, with a broad range of applications including disease gene prioritization, drug-disease associations, and drug response in cancer. The general principle in link prediction is to use the topological characteristics and the attributes–if available– of the nodes in the network to predict new links that are likely to emerge/disappear. Recently, graph representation learning methods, which aim to learn a low-dimensional representation of topological characteristics and the attributes of the nodes, have drawn increasing attention to solve the link prediction problem via learnt low-dimensional features. Most prominently, Graph Convolution Network (GCN)-based network embedding methods have demonstrated great promise in link prediction due to their ability of capturing non-linear information of the network. To date, GCN-based network embedding algorithms utilize a Laplacian matrix in their convolution layers as the convolution matrix and the effect of the convolution matrix on algorithm performance has not been comprehensively characterized in the context of link prediction in biomedical networks. On the other hand, for a variety of biomedical link prediction tasks, traditional node similarity measures such as Common Neighbor, Ademic-Adar, and other have shown promising results, and hence there is a need to systematically evaluate the node similarity measures as convolution matrices in terms of their usability and potential to further the state-of-the-art.ResultsWe select 8 representative node similarity measures as convolution matrices within the single-layered GCN graph embedding method and conduct a systematic comparison on 3 important biomedical link prediction tasks: drug-disease association (DDA) prediction, drug–drug interaction (DDI) prediction, protein–protein interaction (PPI) prediction. Our experimental results demonstrate that the node similarity-based convolution matrices significantly improves GCN-based embedding algorithms and deserve more attention in the future biomedical link predictionAvailabilityOur method is implemented as a python library and is available at [email protected] informationSupplementary data are available at Bioinformatics online.

scholarly journals Learning Network Embedding with Community Structural Information

2019 ◽  
Author(s):  
Yu Li ◽  
Ying Wang ◽  
Tingting Zhang ◽  
Jiawei Zhang ◽  
Yi Chang
Keyword(s):  
Community Structure ◽  
Link Prediction ◽  
Structural Information ◽  
Representation Learning ◽  
Network Embedding ◽  
Learning Network ◽  
Optimization Framework ◽  
Vertex Representation ◽  
Low Dimensional ◽  
Embedding Methods

Network embedding is an effective approach to learn the low-dimensional representations of vertices in networks, aiming to capture and preserve the structure and inherent properties of networks. The vast majority of existing network embedding methods exclusively focus on vertex proximity of networks, while ignoring the network internal community structure. However, the homophily principle indicates that vertices within the same community are more similar to each other than those from different communities, thus vertices within the same community should have similar vertex representations. Motivated by this, we propose a novel network embedding framework NECS to learn the Network Embedding with Community Structural information, which preserves the high-order proximity and incorporates the community structure in vertex representation learning. We formulate the problem into a principled optimization framework and provide an effective alternating algorithm to solve it. Extensive experimental results on several benchmark network datasets demonstrate the effectiveness of the proposed framework in various network analysis tasks including network reconstruction, link prediction and vertex classification.

scholarly journals Effective Attributed Network Embedding with Information Behavior Extraction

2021 ◽  
Author(s):  
Ganglin Hu ◽  
Jun Pang ◽  
Xian Mo
Keyword(s):  
Link Prediction ◽  
Feature Vector ◽  
Information Behavior ◽  
Network Embedding ◽  
Basic Vector ◽  
Implicit Information ◽  
Topological Features ◽  
Attributed Network ◽  
Joint Embedding ◽  
Embedding Methods

Abstract Network embedding has shown its effectiveness in many tasks such as link prediction, node classification, and community detection. Most attributed network embedding methods consider topological features and attributed features to obtain a node embedding, but ignore its implicit information behavior features, including information inquiry, interaction, and sharing. This can potentially lead to ineffective performance for downstream applications. In this paper, we propose a novel network embedding framework named information behavior extraction ( IBE ), that incorporates nodes' topological features, attributed features, and information behavior features into a joint embedding framework. To design IBE , we use an existing embedding method (e.g., SDNE, CANE, or CENE) to extract a node's topological features and attributed features into a basic vector. Then, we propose a topic-sensitive network embedding ( TNE ) model to extract node information behavior features and eventually generate information behavior feature vectors. In our TNE model, we propose an importance score rating algorithm ( ISR ), which considers both effects of the topic-based community of a node and its interaction with adjacent nodes to capture a node information behavior features. Eventually, we concatenate a node information behavior feature vector with its basic vector to get its ultimate joint embedding vector. Extensive experiments demonstrate that our method achieves significant and consistent improvements, compared to several state-of-the-art embedding methods on link prediction.

scholarly journals DGE: Deep Generative Network Embedding Based on Commonality and Individuality

2020 ◽  
Vol 34 (04) ◽  
pp. 6949-6956
Author(s):  
Sheng Zhou ◽  
Xin Wang ◽  
Jiajun Bu ◽  
Martin Ester ◽  
Pinggang Yu ◽  
...  
Keyword(s):  
Network Topology ◽  
Real World ◽  
Information Source ◽  
Model Parameters ◽  
Network Embedding ◽  
Generative Process ◽  
Attributed Network ◽  
Node Attributes ◽  
Real World Datasets ◽  
The One

Network embedding plays a crucial role in network analysis to provide effective representations for a variety of learning tasks. Existing attributed network embedding methods mainly focus on preserving the observed node attributes and network topology in the latent embedding space, with the assumption that nodes connected through edges will share similar attributes. However, our empirical analysis of real-world datasets shows that there exist both commonality and individuality between node attributes and network topology. On the one hand, similar nodes are expected to share similar attributes and have edges connecting them (commonality). On the other hand, each information source may maintain individual differences as well (individuality). Simultaneously capturing commonality and individuality is very challenging due to their exclusive nature and existing work fail to do so. In this paper, we propose a deep generative embedding (DGE) framework which simultaneously captures commonality and individuality between network topology and node attributes in a generative process. Stochastic gradient variational Bayesian (SGVB) optimization is employed to infer model parameters as well as the node embeddings. Extensive experiments on four real-world datasets show the superiority of our proposed DGE framework in various tasks including node classification and link prediction.

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