scholarly journals Assessment of potentiality of known bacterial blight resistant genes against Xanthomonas oryzae pv. oryzae pathotypes exist in Bangladesh

2021 ◽  
Vol 6 (3) ◽  
pp. 257-267
Author(s):  
Md. Mahbubul Haque ◽  
Md. Mostafa Masud ◽  
Md. Mokarram Hossain ◽  
Md. Mamunur Rashid ◽  
Md. Zahangir Alam ◽  
...  
Keyword(s):  
Host Resistance ◽  
Bacterial Blight ◽  
Xanthomonas Oryzae ◽  
R Gene ◽  
R Genes ◽  
Near Isogenic Lines ◽  
Rice Varieties ◽  
Isogenic Lines ◽  
Resistant Genes ◽  
Resistance Reaction

Bacterial blight (BB) caused by X. oryzae pv. oryzae is a destructive disease of rice and causes 30-50% losses to rice depending on the outbreak. Development BB resistant rice varieties have long been considered as one of the most effective approach to control the disease. However, the durability of host resistance is breaking down due to the change of pathotypes of X. oryzae pv. oryzae globally. Pathotypic analyses of 239 X. oryzae pv. oryzae Bangladeshi isolates on Near Isogenic Lines (NILs) containing resistance (R) gene (s) revealed the existence of eight pathotypes of X. oryzae pv. oryzae. Among eight pathotypes, pathotypes IV and V were considered as major comprising  maximum number of isolates, (30.13% and 23.01%, respectively), whereas pathotype VIII considered as minor consisting only 2.51% of total isolates. Pathotype, I showed highest virulence or aggressiveness compatible with all NILs, whereas pathotype VIII exhibited lowest virulence to these NILs. Bacterial blight resistant genes viz. Xa1 (75.00%), Xa11 (62.50%) and Xa21 (50.00%) showed resistance to most of the pathotypes while Xa4 performed worst as compared to all others R-genes. In pyramid lines, IRBBB63 (Xa5+Xa7+Xa13) and IRBB57 (Xa5+Xa7 +Xa21) showed resistance reaction and IRBB61 (Xa4+Xa5+Xa7), IRBB60 (Xa4+Xa5+Xa13+Xa21), IRBB54 (Xa5+Xa21), and IRBB53 (Xa4+Xa21) showed susceptible reaction to X. oryzae pv. oryzae pathotypes. These results collectively indicated the deployment of Xa1, Xa11, Xa4, Xa5, Xa7, Xa13 and Xa21 either alone or in combination against BB would be a best choice for the development of BB resistant rice varieties in Bangladesh.

scholarly journals Dynamics of Xanthomonas oryzae pv. oryzae Populations in Korea and Their Relationship to Known Bacterial Blight Resistance Genes

2006 ◽  
Vol 96 (8) ◽  
pp. 867-875 ◽  
Author(s):  
J. U. Jeung ◽  
S. G. Heu ◽  
M. S. Shin ◽  
C. M. Vera Cruz ◽  
K. K. Jena
Keyword(s):  
Bacterial Blight ◽  
Xanthomonas Oryzae ◽  
R Gene ◽  
R Genes ◽  
Near Isogenic Lines ◽  
Bacterial Blight Resistance ◽  
Quantitative Analyses ◽  
Functional Alleles ◽  
Pathogen Populations ◽  
Main Effects

Developing resistant cultivars requires an understanding of the dynamics of the pathogen populations as well as the genetics of host resistance. Bacterial leaf blight (BB), caused by the vascular pathogen Xanthomonas oryzae pv. oryzae, has become one of the most devastating diseases of rice. We demonstrate here the quantitative analyses of responses of near-isogenic lines carrying various BB resistance (R) genes and R-gene combinations against 16 X. oryzae pv. oryzae isolates representing Korean BB pathotypes. The estimated main effects of each R gene against the 16 isolates identified prominent differences in BB pathotypes between Korea and other countries. Three major aspects of our quantitative observations and statistical analysis are (i) strong and broad resistance of xa5; (ii) independent and additive genetic actions of Xa4, xa5, and Xa21 under digenic or trigenic status; and (iii) a strong quantitative complementation effect contributed by the functional alleles of Xa4 and Xa21. We conclude that the pyramid line containing genes Xa4, xa5, and Xa21 would be the most promising and valuable genotype for improving Korean japonica cultivars for BB resistance.

scholarly journals Inhibition of Resistance Gene-Mediated Defense in Rice by Xanthomonas oryzae pv. oryzicola

2006 ◽  
Vol 19 (3) ◽  
pp. 240-249 ◽  
Author(s):  
Seiko Makino ◽  
Akiko Sugio ◽  
Frank White ◽  
Adam J. Bogdanove
Keyword(s):  
Bacterial Blight ◽  
Major Gene ◽  
Rice Cultivar ◽  
Hypersensitive Reaction ◽  
Xanthomonas Oryzae ◽  
R Gene ◽  
R Genes ◽  
Apparent Lack ◽  
Type Iii ◽  
Major Gene Resistance

Xanthomonas oryzae pv. oryzae and the closely related X. oryzae pv. oryzicola cause bacterial blight and bacterial leaf streak of rice, respectively. Although many rice resistance (R) genes and some corresponding avirulence (avr) genes have been characterized for bacterial blight, no endogenous avr/R gene interactions have been identified for leaf streak. Genes avrXa7 and avrXa10 from X. oryzae pv. oryzae failed to elicit the plant defense-associated hypersensitive reaction (HR) and failed to prevent development of leaf streak in rice cultivars with the corresponding R genes after introduction into X. oryzae pv. oryzicola despite the ability of this pathovar to deliver an AvrXa10:Cya fusion protein into rice cells. Furthermore, coinoculation of X. oryzae pv. oryzicola inhibited the HR of rice cultivar IRBB10 to X. oryzae pv. oryzae carrying avrXa10. Inhibition was quantitative and dependent on the type III secretion system of X. oryzae pv. oryzicola. The results suggest that one or more X. oryzae pv. oryzicola type III effectors interfere with avr/R gene-mediated recognition or signaling and subsequent defense response in the host. Inhibition of R gene-mediated defense by X. oryzae pv. oryzicola may explain, in part, the apparent lack of major gene resistance to leaf streak.

scholarly journals PATOGENISITAS ISOLAT BAKTERI Xanthomonas oryzae pv. oryzae DAN PEMANTAUAN PENYAKIT HAWAR DAUN BAKTERI PADA PADI GALUR ISOGENIK

2017 ◽  
Vol 16 (2) ◽  
Author(s):  
Yadi Suryadi ◽  
Triny Suryani Kadir
Keyword(s):  
Xanthomonas Oryzae ◽  
Resistant Variety ◽  
Elisa Assay ◽  
Pathogenicity Test ◽  
R Gene ◽  
R Genes ◽  
Near Isogenic Lines ◽  
West Java ◽  
Rice Disease ◽  
Lower Severity

Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is an important rice disease due to its high intensity that and  the mereased durability of its resistant variety. This study was aimed  to determine the pathogenicity of Xoo isolates, which obtained from four regions/districts in West Java on three rice near isogenic lines (NILs) containing a single resistance (R) gene; and  to study reaction of rice NILs/ differential genotypes containing mixture of resistant genes to Xoo population under endemic areas. Out of 22 Xoo isolates have been collected and further determined by ELISA assay. Ten Xoo isolates were selected and inoculated to identify their pathogenicity on three NILs i.e., IRBB5 (xa5), IRBB7 (Xa7) and IRBB21 (Xa21). Pathogenicity test showed that most of isolates produced large lesion, and four virulence groups were identified. Phylogenetic analysis suggested that the dominant virulent isolates were widely distributed at several district in West Java. It was shown that 11 NILs exhibited high levels of resistant reaction to the predominant Xoo pathotypes in Cianjur, while 10 lines were susceptible. The single R gene (IRBB7, IRBB21 and Java14) exhibited lower BLB severity. The IRBB50, IRBB51, IRBB52, IRBB53 lines (carrying two R genes), IRBB56, IRBB57 (carrying three R genes); IRBB64 (carrying four R genes), and IRBB66 (carrying five R genes) showed lower severity and thus produced higher resistance to Xoo. This study may implied further work to deploy effective R genes against certain Xoo pathotypes in differ  region.   

scholarly journals Linked, if Not the Same, Mi-1 Homologues Confer Resistance to Tomato Powdery Mildew and Root-Knot Nematodes

2011 ◽  
Vol 24 (4) ◽  
pp. 441-450 ◽  
Author(s):  
Alireza Seifi ◽  
Isgouhi Kaloshian ◽  
Jack Vossen ◽  
Daidi Che ◽  
Kishor K. Bhattarai ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Powdery Mildew ◽  
Gene Cluster ◽  
Chromosome 6 ◽  
R Genes ◽  
Near Isogenic Lines ◽  
Root Knot Nematodes ◽  
Isogenic Lines ◽  
Tomato Chromosome ◽  
Tomato Powdery Mildew

On the short arm of tomato chromosome 6, a cluster of disease resistance (R) genes have evolved harboring the Mi-1 and Cf genes. The Mi-1 gene confers resistance to root-knot nematodes, aphids, and whiteflies. Previously, we mapped two genes, Ol-4 and Ol-6, for resistance to tomato powdery mildew in this cluster. The aim of this study was to investigate whether Ol-4 and Ol-6 are homologues of the R genes located in this cluster. We show that near-isogenic lines (NIL) harboring Ol-4 (NIL-Ol-4) and Ol-6 (NIL-Ol-6) are also resistant to nematodes and aphids. Genetically, the resistance to nematodes cosegregates with Ol-4 and Ol-6, which are further fine-mapped to the Mi-1 cluster. We provide evidence that the composition of Mi-1 homologues in NIL-Ol-4 and NIL-Ol-6 is different from other nematode-resistant tomato lines, Motelle and VFNT, harboring the Mi-1 gene. Furthermore, we demonstrate that the resistance to both nematodes and tomato powdery mildew in these two NIL is governed by linked (if not the same) Mi-1 homologues in the Mi-1 gene cluster. Finally, we discuss how Solanum crops exploit Mi-1 homologues to defend themselves against distinct pathogens.

scholarly journals Breeding for Resistance to Fusarium Wilt of Tomato: A Review

Genes ◽  
2021 ◽  
Vol 12 (11) ◽  
pp. 1673
Author(s):  
Jessica Chitwood-Brown ◽  
Gary E. Vallad ◽  
Tong Geon Lee ◽  
Samuel F. Hutton
Keyword(s):  
Molecular Markers ◽  
Fusarium Wilt ◽  
Host Resistance ◽  
R Gene ◽  
Effective Strategy ◽  
R Genes ◽  
Wild Tomato Species ◽  
Tomato Species ◽  
Mapping Gene ◽  
Tomato Breeding

For over a century, breeders have worked to develop tomato (Solanum lycopersicum) cultivars with resistance to Fusarium wilt (Fol) caused by the soilborne fungus Fusarium oxysporum f. sp. lycopersici. Host resistance is the most effective strategy for the management of this disease. For each of the three Fol races, resistance has been introgressed from wild tomato species, predominately in the form of R genes. The I, I-2, I-3, and I-7 R genes have each been identified, as well as the corresponding Avr effectors in the fungus with the exception of Avr7. The mechanisms by which the R gene protein products recognize these effectors, however, has not been elucidated. Extensive genetic mapping, gene cloning, and genome sequencing efforts support the development of tightly-linked molecular markers, which greatly expedite tomato breeding and the development of elite, Fol resistant cultivars. These resources also provide important tools for pyramiding resistance genes and should support the durability of host resistance.

Phenotypic Mechanisms of Host Resistance Against Greenbug (Homoptera: Aphididae) Revealed by Near Isogenic Lines of Wheat

2004 ◽  
Vol 97 (2) ◽  
pp. 654-660 ◽  
Author(s):  
Yiqun Weng ◽  
Mark D. Lazar ◽  
Gerald J. Michels ◽  
Jackie C. Rudd
Keyword(s):  
Host Resistance ◽  
Near Isogenic Lines ◽  
Isogenic Lines

scholarly journals Genome Resource of a Hypervirulent Strain LN4 of Xanthomonas oryzae pv. oryzae Causing Bacterial Blight of Rice

Plant Disease ◽  
2020 ◽  
Vol 104 (11) ◽  
pp. 2764-2767
Author(s):  
Zhengyin Xu ◽  
Sai Wang ◽  
Liang Liu ◽  
Yangyang Yang ◽  
Bo Zhu ◽  
...  
Keyword(s):  
Bacterial Blight ◽  
Xanthomonas Oryzae ◽  
Nanopore Sequencing ◽  
Transcription Activator ◽  
Rice Varieties ◽  
Single Chromosome ◽  
Coding Sequences ◽  
Genome Data ◽  
Bacterial Blight Of Rice ◽  
Virulence Effectors

Xanthomonas oryzae pv. oryzae is the causative agent of bacterial blight of rice and causes severe harvest loss and challenges to a stable food supply globally. In this study, a hypervirulent strain, LN4, compatible in rice varieties carrying Xa3, Xa4, xa13, and xa25 resistance genes, was used to generate DNA for nanopore sequencing. After assembly, the genome comprises a single chromosome of 5,012,583 bp, consisting of a total of 6,700 predicted coding sequences. Seventeen transcription activator-like effectors (TALEs) were encoded in the genome, of which two (Tal7 and Tal6c) were major TALEs. The approach and genome data provide information for the discovery of new virulence effectors and understanding of the virulence mechanism of TALEs in rice.

scholarly journals Ketahanan Galur Isogenik IRBBN dan Galur Harapan Padi terhadap Patotipe Xanthomonas oryzae pv. oryzae Dominan pada Tanaman Padi di Indonesia

2018 ◽  
Vol 23 (1) ◽  
pp. 23
Author(s):  
Dini Yuliani ◽  
Untung Susanto ◽  
Sudir Sudir
Keyword(s):  
Block Design ◽  
International Rice Research Institute ◽  
Xanthomonas Oryzae ◽  
Near Isogenic Lines ◽  
Field Station ◽  
Isogenic Lines ◽  
Resistant Varieties ◽  
Dry Seasons ◽  
Cropping Seasons ◽  
Research Institute

<p><strong>Abstract</strong></p><p>The resistance genes in IRBB near isogenic lines (NILs) which was introduced from International Rice Research Institute (IRRI) have been known. It could be used as source of resistance to the dominant Xanthomonas oryzae pv. oryzae (Xoo) pathotype in Indonesia. The purpose of this research was to evaluate IRBBN NILs and promising lines to the dominant Xoo pathotype in Indonesia i.e. pathotype III, IV, and VIII. Research was conducted at Sukamandi exprerimental field station in Subang, West Java, at dry seasons (DS) 2012 and wet seasons (WS) 2012/2013. The experiment was conducted following Factorial Randomized Completely Block Design with three replications. The first factor were three pathotype Xoo that was pathotype III, IV, and VIII, while the second factor were 20 IRBB lines, 6 promising lines, and 6 refferer varieties such as Conde, Lusi, Logawa, Java 14, Angke, dan Inpari 1. The result showed that three isogenic lines i.e. IRBB 21, IRBB 50, and IRBB 52 were resistant to Xoo pathotype III, IV, and VIII at DS 2012. At WS 2012/2013 was obtained five isogenic lines i.e. IRBB 52, IRBB 53, IRBB 54, IRBB 56, and IRBB 57 resistant to Xoo pathotype III, IV, and VIII. IRBB 52 was consistently resistant to the three Xoo pathotypes in two cropping seasons. It could be recommended to be used as donor in developing new resistant varieties to bacterial leaf blight.</p><p> </p><p><strong>Abstrak</strong></p><p>Galur isogenik IRBB introduksi dari International Rice Research Institute (IRRI) telah diketahui gen ketahanannya dan dapat digunakan sebagai sumber ketahanan terhadap patotipe Xanthomonas oryzae pv. oryzae (Xoo) dominan di Indonesia. Kegiatan penelitian ini bertujuan untuk mengevaluasi ketahanan galur isogenik dan galur harapan terhadap patotipe Xoo dominan di Indonesia, yaitu patotipe III, IV, dan VIII. Penelitian dilaksanakan di Kebun Percobaan Sukamandi, Subang, Jawa Barat pada musim kemarau (MK) 2012 dan musim hujan (MH) 2012/2013. Penelitian dilakukan dengan Rancangan Faktorial Acak Kelompok dengan tiga ulangan. Faktor pertama adalah tiga patotipe Xoo, yaitu patotipe III, IV, dan VIII, sedangkan faktor kedua yaitu materi yang diuji sebanyak 20 galur IRBB, 6 galur harapan padi, dan 6 varietas pembanding, yaitu Conde, Lusi, Logawa, Java 14, Angke, dan Inpari 1. Hasil penelitian menunjukkan bahwa galur isogenik IRBB 21, IRBB 50, dan IRBB 52 bereaksi tahan terhadap Xoo patotipe III, IV, dan VIII pada MK 2012. Pada MH 2012/2013 diperoleh lima galur isogenik IRBB 52, IRBB 53, IRBB 54, IRBB 56, dan IRBB 57 bereaksi tahan terhadap Xoo patotipe III, IV, dan VIII. Galur isogenik IRBB 52 konsisten tahan terhadap Xoo patotipe III, IV, dan VIII pada dua musim tanam. Oleh karena itu, galur tersebut dapat direkomendasikan untuk dijadikan tetua tahan untuk perakitan varietas tahan HDB.</p>

scholarly journals Seleksi Lapang Ketahanan Beberapa Varietas Padi terhadap Infeksi Hawar Daun Bakteri Strain IV dan VIII

2016 ◽  
Vol 17 (2) ◽  
pp. 80 ◽  
Author(s):  
Lina Herlina ◽  
Tiur S. Silitonga
Keyword(s):  
Oryza Sativa ◽  
Block Design ◽  
Leaf Blight ◽  
Xanthomonas Oryzae ◽  
Bacterial Leaf Blight ◽  
Bacterial Cells ◽  
Bacterial Strains ◽  
Rice Varieties ◽  
Resistance Reaction ◽  
Index Of Severity

<p>Field Selection on Several Rice Varieties for Resistance to Bacterial Leaf Blight strain IV and VIII. Bacterial leaf blight (BLB) on rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (Xoo) is the major obstruction for rice production. Powerful strategy to control BLB is generally conducted by planting resistant plant. Meanwhile, the main way to explore germplasm as the source of resistance gene is conducted by selection a wide rice varieties. Field selection for resistance to BLB on 150 rice-varieties (BB-Biogen collection) was conducted in 2009 in Cianjur. Three leaves and flag leaves of individual hills at vegetative and flowering stage were inoculated by clipping the leaf tip with scissors which had been connected with a suspension bottle of bacterial cells (109- 1010 cells/ml) of the isolates which represented bacterial groups (strain) IV and VIII, respectively. Each plant was inoculated with one race. Two weeks after inoculation, length of the lesion developed on the inoculated leaf was measured, as an index of severity of infection by BLB. This experiment was treated as Factorial-Randomized Completed Block Design (two factor-with 3 replications, respectively). The resistancyreaction to strain IV and VIII was observed as the variable tested, while the factors measured consists of plant-varieties and two bacterial strains. The results showed that 11 varieties with a resistance-reaction to Xoo strain IV, inwhich 5 varieties poses a consistent resistance-reaction, i.e: Pulu Bolong, Pelopor, Gombal, Barito and Kapuas. While resistancereaction to Xoo strain VIII obtained only one variety : IR42 (score-1), while 17 others showed intermediate resistancy (score-3).</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv. oryzae (Xoo) pada padi (Oryza sativa) merupakan faktor pembatas upaya peningkatan produksi padi. Pencarian gen-gen tahan terhadap HDB sangat diperlukan untuk pengendalian penyakit tersebut. Seleksi ketahanan terhadap HDB dilakukan di Cianjur pada MT 2009 terhadap 150 varietas padi koleksi Bank Gen, BB-Biogen. Isolat Xoo yang diuji adalah strain IV dan VIII. Inokulasi dilakukan dua kali, yaitu pada fase vegetatif dan generatif dengan cara menggunting 3-5 cm dari ujung daun dan daun bendera dengan gunting yang telah dihubungkan dengan botol berisi suspensi Xoo strain IV dan VIII (109-1010 sel/ml). Rancangan percobaan yang digunakan dalam penelitian ini adalah acak kelompok faktorial dengan tiga ulangan. Sebagai varietas pembanding tahan digunakan IRBB7 dan pembanding rentan varietas Kencana Bali. Reaksi ketahanan tertinggi terhadap Xoo strain IV ditunjukkan oleh 11 varietas terpilih dengan reaksi agak tahan, lima varietas di antaranya menunjukkan reaksi yang konsisten agak tahan, yaitu varietas Pulu Bolong, Pelopor, Gombal, Barito, dan Kapuas. Reaksi &amp;lsquo;tahan&amp;rsquo; terhadap Xoo strain VIII ditunjukkan oleh satu varietas introduksi IR42. Untuk varietas terpilih dengan reaksi &amp;lsquo;agak tahan&amp;rsquo; terdapat 17 varietas.</p>

scholarly journals Development of Submergence-Tolerant, Bacterial Blight-Resistant, and High-Yielding Near Isogenic Lines of Popular Variety, ‘Swarna’ Through Marker-Assisted Breeding Approach

2021 ◽  
Vol 12 ◽  
Author(s):  
Shibani Mohapatra ◽  
Alok Kumar Panda ◽  
Akshaya Kumar Bastia ◽  
Arup Kumar Mukherjee ◽  
Priyadarshini Sanghamitra ◽  
...  
Keyword(s):  
Bacterial Blight ◽  
Target Genes ◽  
Rice Variety ◽  
Yield Component ◽  
Eastern Region ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
Rainfed Rice ◽  
Donor Parent ◽  
Recipient Parent

The rice variety ‘Swarna’ is highly popular in the eastern region of India. The farmers of eastern India cultivate mainly rainfed rice and face the adverse effects of climate change very frequently. Rice production in this region is not stable. Swarna variety is highly susceptible to bacterial blight (BB) disease and flash floods, which cause a heavy reduction in the yield. Transfer of five target genes/QTLs was targeted into the variety, Swarna by adopting marker-assisted backcross breeding approach. Direct markers for Sub1A, OsSPL14, and SCM2 QTLs and closely linked markers for xa5 and Xa21 BB resistance genes were screened in the backcross progenies. Swarna-Sub1, CR Dhan 800, and Swarna–Habataki near-isogenic lines (NILs) were used as donor parents in the breeding program. True multiple F1 plants were identified for backcrossing, and 796 BC1F1 seeds were generated. Foreground selection detected all the five target genes in six progenies in BC1F1 generation. The progeny containing all the target genes and more similar with the recipient parent was backcrossed, and a total of 446 BC2F1 seeds were produced. Foreground screening detected four BC2F1 plants carrying the five target genes. A total of 2,145 BC2F2 seeds were obtained from the best BC2F1 progeny. Screening of the progenies resulted in one plant with all five desirable genes, three plants with four, and another three progenies carrying three genes in homozygous conditions. The pyramided lines showed higher BB resistance and submergence tolerance than the recipient parent, Swarna. Culm strength of the pyramided lines showed higher breaking force than the recipient parent, Swarna. The pyramided line, SSBY-16-68-69 yielded the highest grain yield of 7.52 t/ha followed by the lines SSBY-16-68-511 (7.34 t/ha) and SSBY-16-68-1633 (7.02 t/ha). The best-pyramided line showed a yield advantage of 18% over the recipient parent and 6.8% over the yield component donor parent. Seven pyramided lines showed higher yield than the recipient parent, while five lines were better yielders than the yield component donor parent. The pyramided line SSBY-16-68-69 produced 365 grains/panicle, while the recipient had 152. The main morphologic and grain quality features of the recipient parent were retained in the pyramided lines.

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