scholarly journals Lessons of studies of karyotypic and genomic evolution in animals, application of developed technique in the studies of karyotype and genome organization in plants

Author(s):  
N. V. Rubtsov

The present report is devoted to analysis of results obtained with modern molecular and molecular-cytogenetic methods in studies of karyotype and genome organization in various animal species. Perspectives of their application for the study of karyotype and genome organization in plants are considered and discussed.

2017 ◽  
Vol 151 (2) ◽  
pp. 82-88 ◽  
Author(s):  
Naiara Pereira Araújo ◽  
Alice Alves do Espírito Santo ◽  
Valéria do Socorro Pereira ◽  
Roscoe Stanyon ◽  
Marta Svartman

We studied the chromosomes of Callicebus nigrifrons with conventional and molecular cytogenetic methods. Our chromosome painting analysis in C. nigrifrons together with previous reports allowed us to hypothesize an ancestral Callicebinae karyotype with 2n = 48. The associations of human chromosomes (HSA) 2/22, 7/15, 10/11, and the inverted HSA2/16 would link Callicebus, Cheracebus, and Plecturocebus and would thus be present in the ancestral Callicebinae karyotype. Four fusions (HSA1b/1c, 3c/8b, 13/20, and 14/15/3/21) and 1 fission (HSA2/22) are synapomorphies of Callicebus. The associations HSA3/15 and HSA3/9 are chromosome features linking Callicebus and Cheracebus, whereas the association HSA13/17 would represent a link between Callicebus and the moloch group (Plecturocebus). Only 6 of the 33 recognized titi monkey species have now been painted with human chromosome-specific probes. Further analyses are needed to clarify the phylogenomic relationships in this species-rich group.


2006 ◽  
Vol 14 (6) ◽  
pp. 629-635 ◽  
Author(s):  
G. González ◽  
C. Comas ◽  
V. Confalonieri ◽  
C. A. Naranjo ◽  
L. Poggio

2015 ◽  
Vol 146 (2) ◽  
pp. 109-114
Author(s):  
Maria A. Rigola ◽  
Neus Baena ◽  
Vicenç Català ◽  
Iris Lozano ◽  
Elisabet Gabau ◽  
...  

Most apparent balanced chromosomal inversions are usually clinically asymptomatic; however, infertility, miscarriages, and mental retardation have been reported in inversion carriers. We present a small family with a paracentric inversion 1q42.13q43 detected in routine prenatal diagnosis. Molecular cytogenetic methods defined the size of the inversion as 11.7 Mb and excluded other unbalanced chromosomal alterations in the patients. Our findings suggest that intellectual disability is caused by dysfunction, disruption, or position effects of genes located at or near the breakpoints involved in this inversion.


Genome ◽  
1997 ◽  
Vol 40 (1) ◽  
pp. 34-40 ◽  
Author(s):  
Yuanfu Ji ◽  
Dwaine A. Raska ◽  
M. Nurul Islam-Faridi ◽  
Charles F. Crane ◽  
Michael S. Zwick ◽  
...  

The extensive use of molecular cytogenetics in human genetics and clinical diagnostics indicates that analogous applications in plants are highly feasible. One sort of application would be the identification of new aneuploids, which traditionally involves either direct karyotypic identification, which is feasible in only a few plant species, or tests with markers (cytogenetic, genetic, or molecular), which require sexual hybridization and at least one subsequent seed or plant generation. We have used meiotic fluorescence in situ hybridization (FISH) to analyze a new monosome of cotton (Gossypium hirsutum L., 2n = 4x = 52, 2(AD)1) that had a phenotype which seemed to be distinct from monosomes in the Cotton Cytogenetic Collection. Painting with A2-genome DNA revealed the monosome's D-subgenome origin. DAPI–PI staining showed that the monosome carries a major NOR, delimiting it to the major NOR-bearing chromosomes of the D-subgenome, i.e., 16 or 23. Dual-color FISH with 5S and 18S–28S rDNAs indicated that the monosome contains separate major clusters of each of these two tandemly repeated rDNA elements, thus delimiting the monosome to chromosome 23, for which the Cotton Cytogenetic Collection has previously been devoid of any sort of deficiency. Of the 26 chromosomes in the cotton genome, the Collection now provides coverage for 16 (70%) in the form of monosomy, and 20 (77%) in the form of monosomy and (or) telosomy. Use of molecular cytogenetic methods to identify a new plant aneuploid in cotton exemplifies the fact that a physicochemical karyotypic chromosome identification system is not required a priori for application of new molecular cytogenetic methods, thus indicating their potential applicability to nearly all plant species.Key words: fluorescence in situ hybridization, monosome, aneuploid, Gossypium hirsutum.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Aftab Ahmad ◽  
Gabriel Luz Wallau ◽  
Zhumei Ren

AbstractTransposable elements (TEs), also known as jumping genes, are widely spread in the genomes of insects and play a considerable role in genomic evolution. Mariner/DD34D family belongs to class II transposable elements which is widely spread in the genomes of insects and have considerable role in genomic evolution. Mariner like elements (MLEs) were searched in the genomes of seven species of Rhus gall aphids belonging to six genera. In total, 121 MLEs were detected in the genomes of the seven investigated species of Rhus gall aphids, which showed a wide distribution in both close and distant related species. The sequences of MLEs ranged from 1 to 1.4 kb in length and the structural analysis of the MLEs showed that only five copies were potentially active with intact open reading frame (ORF) and terminal inverted repeats (TIRs). Phylogenetic analysis showed that all the 121 MLE sequences belonged to four subfamilies, i.e., Mauritiana, Drosophila, Vertumana and Irritans, among which Drosophila and Vertumana subfamilies were reported in aphids for the first time. Our present report revealed the diversity and distribution of MLEs in Rhus gall aphid genomes and expanded our understandings on the characterization of transposable elements in aphid genomes, which might be useful as genetic markers and tools and would play an important role in genomic evolution and adaptation of aphids.


2016 ◽  
pp. 42-44
Author(s):  
A.S. Dariy ◽  
◽  
A.A. Stepanov ◽  
S.V. Denisenko ◽  
◽  
...  

The objective: To define the percentage of molecular-cytogenetic methods in chromosomal anomalies diagnosis among the couples who had visited Human Reproduction Problems Clinic. To define the algoritm of pregravidate service of couples using the molecular-cytogenetic results. Patients and methods. Сytogenetic analysis was performed for 1812 couples (3624 patients) who visited Human Reproduction Problems Clinic. Molecular-cytogenetic analysis was performed for 426 patients. Results. Molecular-cytogenetic methods were used in 11.75% cases. Mostly (in 78.2% cases) it was used for knowing the correlation between normal and abnormal clones in karyotype. Also it was used for identification of balanced translocations breakpoints (in 15.8% cases) and for identification of marker chromosomes (2.9% cases). Conclusions. Our results demonstrate effectiveness of molecular-cytogenetic methods for genome and chromosomal mutations analysis among couples with reproductive problems. The results were taken in account during pregravidate service of couples with reproductive problems. Knowing of genetic mechanisms of reproductive failure is importing for preconception examination. Key words: infertility, pregravidate service, chromosomal pathology, genome mutations, mosaicism, molecular-cytogenetic methods.


Genes ◽  
2019 ◽  
Vol 10 (11) ◽  
pp. 934 ◽  
Author(s):  
Augstenová ◽  
Mazzoleni ◽  
Kostmann ◽  
Altmanová ◽  
Frynta ◽  
...  

Homologous and differentiated ZZ/ZW sex chromosomes (or derived multiple neo-sex chromosomes) were often described in caenophidian snakes, but sex chromosomes were unknown until recently in non-caenophidian snakes. Previous studies revealed that two species of boas (Boa imperator, B. constrictor) and one species of python (Python bivittatus) independently evolved XX/XY sex chromosomes. In addition, heteromorphic ZZ/ZW sex chromosomes were recently revealed in the Madagascar boa (Acrantophis sp. cf. dumerili) and putatively also in the blind snake Myriopholis macrorhyncha. Since the evolution of sex chromosomes in non-caenophidian snakes seems to be more complex than previously thought, we examined ten species of pythons and boas representing the families Boidae, Calabariidae, Candoiidae, Charinidae, Pythonidae, and Sanziniidae by conventional and molecular cytogenetic methods, aiming to reveal their sex chromosomes. Our results show that all examined species do not possess sex-specific differences in their genomes detectable by the applied cytogenetic methods, indicating the presence of poorly differentiated sex chromosomes or even the absence of sex chromosomes. Interestingly, fluorescence in situ hybridization with telomeric repeats revealed extensive distribution of interstitial telomeric repeats in eight species, which are likely a consequence of intra-chromosomal rearrangements.


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