scholarly journals Physically Inspired Dense Fusion Networks for Relighting

2021 ◽  
Author(s):  
Amirsaeed Yazdani
Keyword(s):  
State Of The Art ◽  
Model Performance ◽  
Ground Truth ◽  
Black Box ◽  
Training Stage ◽  
Physical Insight ◽  
Image Relighting ◽  
One To One ◽  
Normal Vectors ◽  
Weight Map

Image relighting has emerged as a problem of signif?icant research interest inspired by augmented reality ap?plications. Physics-based traditional methods, as well asblack box deep learning models, have been developed. The existing deep networks have exploited training to achieve a new state of the art; however, they may perform poorly when training is limited or does not represent problem phe?nomenology, such as the addition or removal of dense shad?ows. We propose a model which enriches neural networks with physical insight. More precisely, our method gener?ates the relighted image with new illumination settings via two different strategies and subsequently fuses them using a weight map (w). In the first strategy, our model predicts the material reflectance parameters (albedo) and illumina?tion/geometry parameters of the scene (shading) for the re?lit image (we refer to this strategy as intrinsic image de?composition (IID)). The second strategy is solely based on the black box approach, where the model optimizes its weights based on the ground-truth images and the loss terms in the training stage and generates the relit output directly (we refer to this strategy as direct). While our pro?posed method applies to both one-to-one and any-to-any relighting problems, for each case we introduce problem?specific components that enrich the model performance: 1) For one-to-one relighting we incorporate normal vectors of the surfaces in the scene to adjust gloss and shadows ac?cordingly in the image. 2) For any-to-any relighting, we propose an additional multiscale block to the architecture to enhance feature extraction. Experimental results on the VIDIT 2020 and the VIDIT 2021 dataset (used in the NTIRE 2021 relighting challenge) reveals that our proposal can outperform many state-of-the-art methods in terms of well?known fidelity metrics and perceptual loss

scholarly journals The Dangers of Post-hoc Interpretability: Unjustified Counterfactual Explanations

2019 ◽  
Author(s):  
Thibault Laugel ◽  
Marie-Jeanne Lesot ◽  
Christophe Marsala ◽  
Xavier Renard ◽  
Marcin Detyniecki
Keyword(s):  
State Of The Art ◽  
Ground Truth ◽  
Black Box ◽  
Box Model ◽  
Ground Truth Data ◽  
Actual Knowledge ◽  
Post Hoc

Post-hoc interpretability approaches have been proven to be powerful tools to generate explanations for the predictions made by a trained black-box model. However, they create the risk of having explanations that are a result of some artifacts learned by the model instead of actual knowledge from the data. This paper focuses on the case of counterfactual explanations and asks whether the generated instances can be justified, i.e. continuously connected to some ground-truth data. We evaluate the risk of generating unjustified counterfactual examples by investigating the local neighborhoods of instances whose predictions are to be explained and show that this risk is quite high for several datasets. Furthermore, we show that most state of the art approaches do not differentiate justified from unjustified counterfactual examples, leading to less useful explanations.

Building Attention and Edge Convolution Neural Networks for Bioactivity and Physical-Chemical Property Prediction

2019 ◽  
Author(s):  
Michael Withnall ◽  
Edvard Lindelöf ◽  
Ola Engkvist ◽  
Hongming Chen
Keyword(s):  
Message Passing ◽  
State Of The Art ◽  
A Priori ◽  
Model Performance ◽  
Learning Approaches ◽  
Physical Chemical ◽  
Chemical Descriptor ◽  
Derived Properties ◽  
Memory Schemes ◽  
Hyperparameter Selection

We introduce Attention and Edge Memory schemes to the existing Message Passing Neural Network framework for graph convolution, and benchmark our approaches against eight different physical-chemical and bioactivity datasets from the literature. We remove the need to introduce <i>a priori</i> knowledge of the task and chemical descriptor calculation by using only fundamental graph-derived properties. Our results consistently perform on-par with other state-of-the-art machine learning approaches, and set a new standard on sparse multi-task virtual screening targets. We also investigate model performance as a function of dataset preprocessing, and make some suggestions regarding hyperparameter selection.

Review of the Applications of Deep Learning in Bioinformatics

2021 ◽  
Vol 15 (8) ◽  
pp. 898-911
Author(s):  
Yongqing Zhang ◽  
Jianrong Yan ◽  
Siyu Chen ◽  
Meiqin Gong ◽  
Dongrui Gao ◽  
...  
Keyword(s):  
Deep Learning ◽  
Drug Discovery ◽  
Biomedical Imaging ◽  
State Of The Art ◽  
Black Box ◽  
Medical Data ◽  
Biological Data ◽  
High Dimensional ◽  
Biological Research ◽  
Process Data

Rapid advances in biological research over recent years have significantly enriched biological and medical data resources. Deep learning-based techniques have been successfully utilized to process data in this field, and they have exhibited state-of-the-art performances even on high-dimensional, nonstructural, and black-box biological data. The aim of the current study is to provide an overview of the deep learning-based techniques used in biology and medicine and their state-of-the-art applications. In particular, we introduce the fundamentals of deep learning and then review the success of applying such methods to bioinformatics, biomedical imaging, biomedicine, and drug discovery. We also discuss the challenges and limitations of this field, and outline possible directions for further research.

scholarly journals G-Tric: generating three-way synthetic datasets with triclustering solutions

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
João Lobo ◽  
Rui Henriques ◽  
Sara C. Madeira
Keyword(s):  
State Of The Art ◽  
Synthetic Data ◽  
Ground Truth ◽  
Real Data ◽  
Three Dimensions ◽  
Additional Advantage ◽  
Urban Dynamics ◽  
Data Generator ◽  
Real World Datasets ◽  
Synthetic Datasets

Abstract Background Three-way data started to gain popularity due to their increasing capacity to describe inherently multivariate and temporal events, such as biological responses, social interactions along time, urban dynamics, or complex geophysical phenomena. Triclustering, subspace clustering of three-way data, enables the discovery of patterns corresponding to data subspaces (triclusters) with values correlated across the three dimensions (observations $$\times$$ × features $$\times$$ × contexts). With increasing number of algorithms being proposed, effectively comparing them with state-of-the-art algorithms is paramount. These comparisons are usually performed using real data, without a known ground-truth, thus limiting the assessments. In this context, we propose a synthetic data generator, G-Tric, allowing the creation of synthetic datasets with configurable properties and the possibility to plant triclusters. The generator is prepared to create datasets resembling real 3-way data from biomedical and social data domains, with the additional advantage of further providing the ground truth (triclustering solution) as output. Results G-Tric can replicate real-world datasets and create new ones that match researchers needs across several properties, including data type (numeric or symbolic), dimensions, and background distribution. Users can tune the patterns and structure that characterize the planted triclusters (subspaces) and how they interact (overlapping). Data quality can also be controlled, by defining the amount of missing, noise or errors. Furthermore, a benchmark of datasets resembling real data is made available, together with the corresponding triclustering solutions (planted triclusters) and generating parameters. Conclusions Triclustering evaluation using G-Tric provides the possibility to combine both intrinsic and extrinsic metrics to compare solutions that produce more reliable analyses. A set of predefined datasets, mimicking widely used three-way data and exploring crucial properties was generated and made available, highlighting G-Tric’s potential to advance triclustering state-of-the-art by easing the process of evaluating the quality of new triclustering approaches.

scholarly journals COVID-19 infection map generation and detection from chest X-ray images

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Aysen Degerli ◽  
Mete Ahishali ◽  
Mehmet Yamac ◽  
Serkan Kiranyaz ◽  
Muhammad E. H. Chowdhury ◽  
...  
Keyword(s):  
State Of The Art ◽  
Ground Truth ◽  
Clinical Use ◽  
X Ray ◽  
Learning Techniques ◽  
Map Generation ◽  
Severity Grading ◽  
Chest X Ray ◽  
Novel Method ◽  
Aided Diagnosis

AbstractComputer-aided diagnosis has become a necessity for accurate and immediate coronavirus disease 2019 (COVID-19) detection to aid treatment and prevent the spread of the virus. Numerous studies have proposed to use Deep Learning techniques for COVID-19 diagnosis. However, they have used very limited chest X-ray (CXR) image repositories for evaluation with a small number, a few hundreds, of COVID-19 samples. Moreover, these methods can neither localize nor grade the severity of COVID-19 infection. For this purpose, recent studies proposed to explore the activation maps of deep networks. However, they remain inaccurate for localizing the actual infestation making them unreliable for clinical use. This study proposes a novel method for the joint localization, severity grading, and detection of COVID-19 from CXR images by generating the so-called infection maps. To accomplish this, we have compiled the largest dataset with 119,316 CXR images including 2951 COVID-19 samples, where the annotation of the ground-truth segmentation masks is performed on CXRs by a novel collaborative human–machine approach. Furthermore, we publicly release the first CXR dataset with the ground-truth segmentation masks of the COVID-19 infected regions. A detailed set of experiments show that state-of-the-art segmentation networks can learn to localize COVID-19 infection with an F1-score of 83.20%, which is significantly superior to the activation maps created by the previous methods. Finally, the proposed approach achieved a COVID-19 detection performance with 94.96% sensitivity and 99.88% specificity.

scholarly journals Evaluating the accuracy and uncertainty of atmospheric and wave model hindcasts during severe events using model ensembles

2021 ◽  
Author(s):  
Ali Abdolali ◽  
Andre van der Westhuysen ◽  
Zaizhong Ma ◽  
Avichal Mehra ◽  
Aron Roland ◽  
...  
Keyword(s):  
Extreme Event ◽  
Numerical Models ◽  
Model Performance ◽  
Ground Truth ◽  
Wave Model ◽  
Atmospheric Model ◽  
Stationary Source ◽  
Source Point ◽  
Spectral Wave Model ◽  
Model Ensembles

AbstractVarious uncertainties exist in a hindcast due to the inabilities of numerical models to resolve all the complicated atmosphere-sea interactions, and the lack of certain ground truth observations. Here, a comprehensive analysis of an atmospheric model performance in hindcast mode (Hurricane Weather and Research Forecasting model—HWRF) and its 40 ensembles during severe events is conducted, evaluating the model accuracy and uncertainty for hurricane track parameters, and wind speed collected along satellite altimeter tracks and at stationary source point observations. Subsequently, the downstream spectral wave model WAVEWATCH III is forced by two sets of wind field data, each includes 40 members. The first ones are randomly extracted from original HWRF simulations and the second ones are based on spread of best track parameters. The atmospheric model spread and wave model error along satellite altimeters tracks and at stationary source point observations are estimated. The study on Hurricane Irma reveals that wind and wave observations during this extreme event are within ensemble spreads. While both Models have wide spreads over areas with landmass, maximum uncertainty in the atmospheric model is at hurricane eye in contrast to the wave model.

scholarly journals Classification of Cattle Behaviours Using Neck-Mounted Accelerometer-Equipped Collars and Convolutional Neural Networks

Sensors ◽  
2021 ◽  
Vol 21 (12) ◽  
pp. 4050
Author(s):  
Dejan Pavlovic ◽  
Christopher Davison ◽  
Andrew Hamilton ◽  
Oskar Marko ◽  
Robert Atkinson ◽  
...  
Keyword(s):  
Neural Network ◽  
Model Performance ◽  
Ground Truth ◽  
Practical Implementation ◽  
Ground Truth Data ◽  
Battery Lifetime ◽  
Implementation Challenges ◽  
Memory Footprint ◽  
Commercial Farms ◽  
Using Data

Monitoring cattle behaviour is core to the early detection of health and welfare issues and to optimise the fertility of large herds. Accelerometer-based sensor systems that provide activity profiles are now used extensively on commercial farms and have evolved to identify behaviours such as the time spent ruminating and eating at an individual animal level. Acquiring this information at scale is central to informing on-farm management decisions. The paper presents the development of a Convolutional Neural Network (CNN) that classifies cattle behavioural states (`rumination’, `eating’ and `other’) using data generated from neck-mounted accelerometer collars. During three farm trials in the United Kingdom (Easter Howgate Farm, Edinburgh, UK), 18 steers were monitored to provide raw acceleration measurements, with ground truth data provided by muzzle-mounted pressure sensor halters. A range of neural network architectures are explored and rigorous hyper-parameter searches are performed to optimise the network. The computational complexity and memory footprint of CNN models are not readily compatible with deployment on low-power processors which are both memory and energy constrained. Thus, progressive reductions of the CNN were executed with minimal loss of performance in order to address the practical implementation challenges, defining the trade-off between model performance versus computation complexity and memory footprint to permit deployment on micro-controller architectures. The proposed methodology achieves a compression of 14.30 compared to the unpruned architecture but is nevertheless able to accurately classify cattle behaviours with an overall F1 score of 0.82 for both FP32 and FP16 precision while achieving a reasonable battery lifetime in excess of 5.7 years.

scholarly journals Critical Aspects of Person Counting and Density Estimation

2021 ◽  
Vol 7 (2) ◽  
pp. 21
Author(s):  
Roland Perko ◽  
Manfred Klopschitz ◽  
Alexander Almer ◽  
Peter M. Roth
Keyword(s):  
Density Estimation ◽  
Network Architecture ◽  
Reference Data ◽  
State Of The Art ◽  
Limit State ◽  
Ground Truth ◽  
Data Sets ◽  
Ground Truth Generation ◽  
Baseline Approach ◽  
Critical Aspects

Many scientific studies deal with person counting and density estimation from single images. Recently, convolutional neural networks (CNNs) have been applied for these tasks. Even though often better results are reported, it is often not clear where the improvements are resulting from, and if the proposed approaches would generalize. Thus, the main goal of this paper was to identify the critical aspects of these tasks and to show how these limit state-of-the-art approaches. Based on these findings, we show how to mitigate these limitations. To this end, we implemented a CNN-based baseline approach, which we extended to deal with identified problems. These include the discovery of bias in the reference data sets, ambiguity in ground truth generation, and mismatching of evaluation metrics w.r.t. the training loss function. The experimental results show that our modifications allow for significantly outperforming the baseline in terms of the accuracy of person counts and density estimation. In this way, we get a deeper understanding of CNN-based person density estimation beyond the network architecture. Furthermore, our insights would allow to advance the field of person density estimation in general by highlighting current limitations in the evaluation protocols.

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