scholarly journals Environmental DNA Monitoring of Biodiversity Hotspots in Danish Marine Waters

2022 ◽  
Vol 8 ◽  
Author(s):  
Peter A. U. Staehr ◽  
Karsten Dahl ◽  
Helle Buur ◽  
Cordula Göke ◽  
Rumakanta Sapkota ◽  
...  
Keyword(s):  
Community Structure ◽  
Species Composition ◽  
Water Temperature ◽  
Water Depth ◽  
Environmental Gradients ◽  
Environmental Dna ◽  
Marine Waters ◽  
The North ◽  
Site Water ◽  
Monitoring Of Biodiversity

We investigated the use of eDNA metabarcoding for supplementing traditional diver-based monitoring of biodiversity of marine boulder reefs within the photic zone. The applied sampling design made it possible to evaluate the usefulness of eDNA monitoring as a supplement for traditional monitoring. Specifically, this study aimed to (1) assess the local influence of boulder reefs on biodiversity across the North Sea to Baltic Sea transition zone and (2) investigate the importance of environmental gradients for patterns in community structure. On samples collected during August 2020, we compared the composition and abundance of species associated with nine reefs, representing an environmental gradient of salinity (16–33 psu), water temperature (16–21°C) and water depth (6–29 m). At each reef site, water was sampled near the bottom just above the reef and on average 2.6 km upstream and downstream (location) and sequenced with metabarcoding using COI, 18S and 12S rDNA primers. eDNA identified 400 species, diver-based observations identified 184 with an overlap of 70 species (12%) and 81 genera (18%). While eDNA identified many infaunal species, it did not detect several macroalgal species which dominated in the diver-based observations. Multivariate analysis of eDNA and diver-based community structure both distinguished between reef communities, with a significant match between patterns observed by the two methods (r = 0.37, p = 0.02). Furthermore, the eDNA approach made it possible to identify significant differences in species composition between upstream, above-reef and downstream locations, suggesting that eDNA leaves a local footprint in benthic habitats. Patterns in both eDNA and diver-based species composition and richness were significantly related to geographical distance, salinity, water temperature and water depth. Despite of low detection of macroalgae, the eDNA sampling provided a substantial supplement to traditional diver-based monitoring of biodiversity around benthic hotspots in the Danish marine waters and therefore we recommend to add eDNA methods to conventional monitoring programs in the future.

scholarly journals CARACTERIZACIÓN ECOLÓGICA DE LAS ASOCIACIONES DE PECES DEMERSALES DEL CARIBE COLOMBIANO NORTE, CON ENFÁSIS EN PARGO (LUTJANIDAE)

2016 ◽  
Vol 30 ◽  
Author(s):  
Luis Manjarrés ◽  
Camilo García ◽  
Arturo Acero P.
Keyword(s):  
Community Structure ◽  
Species Composition ◽  
Environmental Conditions ◽  
Time Scale ◽  
Environmental Gradients ◽  
Demersal Fish

The moan objectives of Iho prosenl study were to establish iho oxistonco ol domorsal lish associations in the sholf and suporior slop© ol tho Colombian Caribboan norlhorn zono and dolormine if tho biolical paltoms dolorminotod by these associations are corrolalioned with tho patloms structured by the environmental conditions evaluated. Data woro taken Irom threo domorsal rosources assessment surveys of tho INPA-VECEPAJE Program. earned out dunng the penod 1995-1996 Tho station groups were not conslstont In terms of species composition along the <»t1oreni periods. The dominant charactenstc of domorsal spocos associations was Iho absonco of terrÿoral persistence. Only It was possible to find somo partial associations which remain dunng a maximum of two sampling penods: Rhombophles auronibens/Pnacanthus aronatus. Lutjanus analis/Lutjanus synagns y Eucinoslomus argontousAJpeneus parvus It were observed seasonal changos in the set of environmental vanables which bettor explain tho community structure. but depth always appears in tho optimal correlation set. Apparently, species co-existence is rather duo to a common answer to environmental gradients, than to spocios interactions. Nevertheless, the relatively low corrolations seem to indicate that other factors, like migrations for biological reasons. could also affect the structuro and composition of demersal fish associations, on a smaller time scale.

scholarly journals Distribusi Spasial Dan Struktur Komunitas Plankton Di Daerah Teluk Penerusan, Kabupaten Buleleng

2017 ◽  
Vol 3 (2) ◽  
pp. 191
Author(s):  
Ni Made Dewi Damayanti ◽  
I Gede Hendrawan ◽  
Elok Faiqoh
Keyword(s):  
Water Quality ◽  
Spatial Distribution ◽  
Community Structure ◽  
Species Composition ◽  
Zooplankton Abundance ◽  
Chemical Parameters ◽  
Phytoplankton Abundance ◽  
The North ◽  
Average Brightness ◽  
Index Value

Research spatial distribution and community structure of plankton in the Penerusan bay has been done on 22 February 2016.Plankton samples were taken at 17 stations using the Horizontal haul. The results obtained by the group of phytoplankton of the most widely found are from class Bacillariophyceae with the abundance of species composition percentage of 77% and the group most zooplankton were found came from class Maxillopoda with the percentage of the species composition of 85%. Highest abundance of phytoplankton found in abundance station 5, while the highest abundance of zooplankton found in abundance station 4. Index values diversity, uniformity and dominance of phytoplankton that is 1,06, 0.40 and 0.11 while the index value of diversity, uniformity and dominance zooplankton are 0.52,0.40 and 0.34. Results of the spatial distribution of phytoplankton abundance scattered in the middle of the bay towards the outside while the spatial distribution of zooplankton abundance spread from the south of the bay towards the middle of the bay and to the north of the bay Forwarding. Water quality in Penerusan Bay of physicists chemical parameters such as temperature obtained ranged from 31.1to 32,5 0C, average brightness obtained 87 %, turbidity obtained ranges between 0,73 to 2.62 ntu, dissolved oxygen (DO) obtained ranged from 6 to 8.3 mg/l , the degree of acidity (pH) obtained ranged from 7.17 to 8.04, salinity obtained ranged from 31-35 ppt, nitrate values obtained ranged from 0.60 to 1.83 mg/l and phosphate values obtained ranged from 0.10 to 0.78 mg/l.

scholarly journals Seasonal Variations In Species Composition And Community Structure In The Eastern Coast of South Korea

2021 ◽  
Author(s):  
Jeonghoon Han ◽  
Do-Hyung Kang ◽  
Heung-Sik Park ◽  
Young-ung choi
Keyword(s):  
Community Structure ◽  
Species Composition ◽  
Water Temperature ◽  
Seasonal Variations ◽  
Eastern Coast ◽  
Monthly Variation ◽  
Fish Community Structure ◽  
Average Water Temperature ◽  
Number Of Individuals

Abstract The seasonal variations in species composition of set net fisheries were investigated in the eastern coast of Korea, from 2007 to 2008. In total, 51 species were found that were classified into 15 orders and 33 families. The water temperature of the study area was 0.1–2.1 °C during the study period, which was higher than the average water temperature in the last decade. Monthly variation in the number of species peaked twice, in May (spring) and November (autumn) when the water temperature increased and decreased, respectively, and monthly variation in the number of individuals showed a remarkably high trend in winter and autumn and was mainly caused by large migratory species. Based on the cluster analysis of the 18 most dominant species with more than 0.4% of the total number of individuals, we divided the species composition and community structure into three groups: fishes with temporary appearance (Group A), fishes with long-term appearance (Group B), and dominant pelagic fishes appearing with long-term appearance (Group C). We could conclude that seasonal variation in the fish community structure was mainly caused by pelagic migration of species under high water temperature conditions during the study period.

scholarly journals Combined Effects of Summer Water Temperature and Current Velocity on the Distribution of a Cold-Water-Adapted Sculpin (Cottus nozawae)

Water ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 975
Author(s):  
Kaiji Suzuki ◽  
Nobuo Ishiyama ◽  
Itsuro Koizumi ◽  
Futoshi Nakamura
Keyword(s):  
Water Temperature ◽  
Climate Warming ◽  
Current Velocity ◽  
Cold Water ◽  
Environmental Gradients ◽  
Combined Effect ◽  
Influential Factor ◽  
Combined Effects ◽  
River Catchment ◽  
Water Abstraction

Clarifying the combined effects of water temperature and other environmental factors on the species distributions of cold-water fishes is the first step toward obtaining a better understanding of the complex impacts of climate warming on these species. In the present study, we examined the abundance and occurrence of the fluvial sculpin, Cottus nozawae, in response to water temperature along environmental gradients in northern Japan. The abundance survey was conducted in the Sorachi River catchment with two-pass electrofishing with a backpack electrofisher. For the occurrence survey, we carried out one-pass electrofishing in the Sorachi, Chitose, and Tokachi River catchments. Fish sampling was conducted once from July to August 2018 in the Sorachi River catchment, from May to June 2011 in the Chitose River catchment, and from July to September 2012 in the Tokachi River catchment. Generalized linear mixed models (GLMMs) and generalized linear models (GLMs) were used for the abundance and occurrence analyses, respectively. We found that the mean summer water temperature was the most influential factor on the distribution of C. nozawae; the abundance and occurrence were both negatively affected by increased water temperatures. In the occurrence model, occurrence probabilities of 0.9 and 0.5 for C. nozawae corresponded to mean summer temperatures of 12.0 and 16.1 °C, respectively. Furthermore, we identified a combined effect of water temperature and current velocity on the abundance of C. nozawae. The increased mean summer water temperature had a stronger negative effect on C. nozawae abundance under gentle flow conditions. While the precise mechanisms of this combined effect could not be determined in this study, stressors associated with low current velocities may increase their vulnerability to higher water temperatures. Our findings indicate that flow disturbances caused by human activities such as excessive water abstraction may exacerbate the negative impacts of climate warming on populations of C. nozawae in the future.

scholarly journals Seasonal quantitative dynamics and ecology of pelagic rotifers in an acidified boreal lake

2017 ◽  
Vol 77 (1) ◽  
Author(s):  
Svein Birger Wærvågen ◽  
Tom Andersen
Keyword(s):  
Community Structure ◽  
Environmental Gradients ◽  
Seasonal Succession ◽  
Biotic Interactions ◽  
Resource Limitation ◽  
Local Environment ◽  
Food Competition ◽  
Variance Partitioning ◽  
Boreal Lake ◽  
Rotifer Community

Lake Gjerstadvann is a dimictic, oligotrophic, slightly acidified boreal lake in southern Norway (northwest Europe). The planktonic rotifer community of this lake was studied quantitatively during one year in order to investigate the impacts of the local environment and biotic interactions on seasonal succession and habitat selection. Pure suspension feeders (mainly Keratella spp., Conochilus spp., and Kellicottia longispina) together with raptorial graspers or specialised feeders (mainly Polyarthra spp. and Collotheca spp.) dominated the rotifer community over prolonged periods, whereas carnivorous/omnivorous species (mainly Asplanchna priodonta) were extremely uncommon. Low bicarbonate buffering capacity resulted in a distinctive seasonal oscillating pH between 5.0 and 5.6, defining a special acid-transition lake category. The pH values were highest in the productive period during summer, and lowest during ice break-up coinciding with the peak reactive aluminium concentrations of 250-300 mg L-1. As in typical Norwegian boreal perch lakes, the most abundant cladoceran was Bosmina longispina due to perch predation on the genus Daphnia. Rotifer community structure was significantly related to temperature and oxygen (P=0.001 and P=0.022), illustrating the important effects of the seasonal cycle and vertical density stratification. The most significant competition indicator species were B. longispina and Eudiaptomus gracilis (both with P=0.001). A variance partitioning indicated that 14% of the total community composition variance could only be explained by biotic interactions, while 19% of the variance could be attributed to environmental gradients. Of the variance, 23% could not be resolved between biotic interactions and environmental gradients, while a residual of 44% was not explainable by any of the variables. Acid conditions alone cannot account for all the observed changes in the rotifer community of this lake with low humic content, since resource limitation and food competition are also important factors shaping rotifer population dynamics and the community structure.

scholarly journals Life histories and distribution of ostracods with depth in western Lake Geneva (Petit-Lac), Switzerland: a reconnaissance study

Crustaceana ◽  
2014 ◽  
Vol 87 (8-9) ◽  
pp. 1095-1123 ◽  
Author(s):  
Laurent Decrouy ◽  
Torsten W. Vennemann
Keyword(s):  
Life History ◽  
Water Temperature ◽  
Water Depth ◽  
Organic Matter Content ◽  
Environmental Parameters ◽  
Late Winter ◽  
Lake Geneva ◽  
Monthly Basis ◽  
Sampling Campaign ◽  
Western Lake

Because environmental conditions within a given basin are different for each season and at different water depth, knowledge of the life history and depth distribution of target species is important for environmental and palaeoenvironmental interpretations based on ostracod species assemblages and/or the geochemical compositions of their valves. In order to determine the distribution of species with depth as well as the life history of species from Lake Geneva, a one-year sampling campaign of living ostracods was conducted at five sites (2, 5, 13, 33 and 70 m water depth) on a monthly basis in the Petit-Lac (western basin of Lake Geneva, Switzerland). Based on the results, the different species can be classified into three groups. Littoral taxa are found at 2 and 5 m water depth and include, in decreasing numbers of individuals,Cypridopsis vidua(O. F. Müller, 1776),Pseudocandona compressa(Koch, 1838),Limnocythere inopinata(Baird, 1843),Herpetocypris reptans(Baird, 1835),Potamocypris smaragdina(Vávra, 1891),Potamocypris similis(G. W. Müller, 1912),Plesiocypridopsis newtoni(Brady & Robertson, 1870),Prionocypris zenkeri(Chyzer & Toth, 1858) andIlyocyprissp. Brady & Norman, 1889. Sublittoral species are found in a majority at 13 m water depth and to a lesser extend at 33 m water depth and include, in decreasing numbers of individuals,Fabaeformiscandona caudata(Kaufmann, 1900),Limnocytherina sanctipatricii,Candona candida(O. F. Müller, 1776) andIsocypris beauchampi(Paris, 1920). Profundal species are found equally at 13, 33 and 70 m water depth and includes, in decreasing numbers of individuals,Cytherissa lacustris(Sars, 1863),Candona neglectaSars, 1887 andCypria lacustrisLilljeborg, 1890. The occurrence ofLimnocytherina sanctipatricii(Brady & Robertson, 1869) is restricted from late winter to late spring when temperatures are low, whileC. vidua,L. inopinata,P. smaragdina,P. similis,P. newtoniandIlyocyprissp. occur predominantly from spring to early autumn when temperatures are high. Individuals ofC. neglecta,C. candida,F. caudata,P. compressa,C. lacustris,H. reptansandCp. lacustrisoccur throughout the year with juveniles and adults occurring during the same period (C. neglectaat 70 m,C. lacustrisat 13, 33 and 70 m, andH. reptansat 2, 5 and 13 m water depth) or with juveniles occurring during a different period of the year than adults (C. neglectaat 13 and 33 m andC. candida,F. caudataandP. compressaat their respective depth of occurrence). Among the environmental parameters investigated, an estimate of the relationship between ostracod autoecology and environmental parameters suggests that in the Petit-Lac: (i) water temperature and substrate characteristics are important factors controlling the distribution of species with depth, (ii) water temperature is also important for determining the timing of species development and, hence, its specific life history, and (iii) water oxygen and sedimentary organic matter content is less important compared to the other environmental parameter monitored.

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