scholarly journals Association Mapping of Flowering Time QTLs and Insight into Their Contributions to Rapeseed Growth Habits

2016 ◽  
Vol 7 ◽  
Author(s):  
Nian Wang ◽  
Biyun Chen ◽  
Kun Xu ◽  
Guizhen Gao ◽  
Feng Li ◽  
...  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tian-Lei Zhao ◽  
Han Li ◽  
Hao-Fan Jiang ◽  
Qi-Zhi Yao ◽  
Ying Huang ◽  
...  

AbstractBacteria are able to induce struvite precipitation, and modify struvite morphology, leading to the mineral with various growth habits. However, the relevant work involving the morphogenesis is limited, thereby obstructing our understanding of bacterially mediated struvite mineralization. Here, an actinomycete Microbacterium marinum sp. nov. H207 was chosen to study its effect on struvite morphology. A combination of bacterial mineralization and biomimetic mineralization techniques was adopted. The bacterial mineralization results showed that strain H207 could induce the formation of struvite with grouping structure (i.e., a small coffin-like crystal grown on a large trapezoid-like substrate crystal), and the overgrowth structure gradually disappeared, while the substrate crystal further evolved into coffin-like, and quadrangular tabular morphology with time. The biomimetic experiments with different organic components confirmed that the soluble macromolecules rich in electronegative carboxyl groups secreted by strain H207 dominate the formation of the struvite grouping. The time-course biomimetic experiments with supernatant testified that the increase in pH and NH4+ content promoted the evolution of crystal habits. Moreover, the evolution process of substrate crystal can be divided into two stages. At the first stage, the crystal grew along the crystallographic b axis. At the later stage, coupled dissolution–precipitation process occurred, and the crystals grew along the corners (i.e., [110] and [1-10] directions). In the case of dissolution, it was also found that the (00-1) face of substrate crystal preferentially dissolved, which results from the low initial phosphate content and high PO43− density on this face. As a result, present work can provide a deeper insight into bio-struvite mineralization.


Author(s):  
Paul Vollrath ◽  
Harmeet S. Chawla ◽  
Sarah V. Schiessl ◽  
Iulian Gabur ◽  
HueyTyng Lee ◽  
...  

Abstract Key message A novel structural variant was discovered in the FLOWERING LOCUS T orthologue BnaFT.A02 by long-read sequencing. Nested association mapping in an elite winter oilseed rape population revealed that this 288 bp deletion associates with early flowering, putatively by modification of binding-sites for important flowering regulation genes. Abstract Perfect timing of flowering is crucial for optimal pollination and high seed yield. Extensive previous studies of flowering behavior in Brassica napus (canola, rapeseed) identified mutations in key flowering regulators which differentiate winter, semi-winter and spring ecotypes. However, because these are generally fixed in locally adapted genotypes, they have only limited relevance for fine adjustment of flowering time in elite cultivar gene pools. In crosses between ecotypes, the ecotype-specific major-effect mutations mask minor-effect loci of interest for breeding. Here, we investigated flowering time in a multiparental mapping population derived from seven elite winter oilseed rape cultivars which are fixed for major-effect mutations separating winter-type rapeseed from other ecotypes. Association mapping revealed eight genomic regions on chromosomes A02, C02 and C03 associating with fine modulation of flowering time. Long-read genomic resequencing of the seven parental lines identified seven structural variants coinciding with candidate genes for flowering time within chromosome regions associated with flowering time. Segregation patterns for these variants in the elite multiparental population and a diversity set of winter types using locus-specific assays revealed significant associations with flowering time for three deletions on chromosome A02. One of these was a previously undescribed 288 bp deletion within the second intron of FLOWERING LOCUS T on chromosome A02, emphasizing the advantage of long-read sequencing for detection of structural variants in this size range. Detailed analysis revealed the impact of this specific deletion on flowering-time modulation under extreme environments and varying day lengths in elite, winter-type oilseed rape.


1995 ◽  
Vol 46 (5) ◽  
pp. 1027 ◽  
Author(s):  
FP Smith ◽  
PS Cocks ◽  
MA Ewing

Cluster clover is a widely distributed and ecologically successful introduced legume in southern Australia. In an attempt to understand the role of genetic variation in this success, morphological and physiological traits were measured in 94 accessions from southern Australia and 6 from the Mediterranean basin. Flowering time ranged from 105 to 185 days after sowing, but was not strongly correlated with annual rainfall or length of growing season at the site of collection. Variation in other traits partitioned the populations into two morphs which, apart from flowering time and leaf marker, were largely homogeneous. The morphs differed significantly in floret number per inflorescence (22 v. 32-37) and seed mass (379 8g v. 523 8g), had different growth habits and strong within-morph associations between leaf markers and stipule and petal coloration. The morphs differed in their distributions within southern Australia and the pattern of distribution was related to summer maximum temperatures, winter minimum temperatures and spring rainfall. These results demonstrate that genetic variation has been important to the success of cluster clover and suggests that the variation is organized. The pattern of variation observed and its relationship to ecogeography is consistent with findings for other highly inbreeding species. A map of the species distribution in Western Australia is presented.


Genome ◽  
2010 ◽  
Vol 53 (11) ◽  
pp. 884-898 ◽  
Author(s):  
Jianjun Zhao ◽  
Anna Artemyeva ◽  
Dunia Pino Del Carpio ◽  
Ram Kumar Basnet ◽  
Ningwen Zhang ◽  
...  

A Brassica rapa collection of 239 accessions, based on two core collections representing different morphotypes from different geographical origins, is presented and its use for association mapping is illustrated for flowering time. We analyzed phenotypic variation of leaf and seed pod traits, plant architecture, and flowering time using data collected from three field experiments and evaluated the genetic diversity with a set of SSR markers. The Wageningen University and Research Centre (WUR) and the Vavilov Research Institute of Plant Industry (VIR) core collections had similar representations of most morphotypes, as illustrated by the phenotypic and genetic variation within these groups. The analysis of population structure revealed five subgroups in the collection, whereas previous studies of the WUR core collection indicated four subgroups; the fifth group identified consisted mainly of oil accessions from the VIR core collection, winter oils from Pakistan, and a number of other types. A very small group of summer oils is described, that is not related to other oil accessions. A candidate gene approach was chosen for association mapping of flowering time with a BrFLC1 biallelic CAPS marker and a BrFLC2 multiallelic SSR marker. The two markers were significantly associated with flowering time, but their effects were confined to certain morphotypes and (or) alleles. Based on these results, we discuss the optimal design for an association mapping population and the need to fix the heterogeneous accessions to facilitate phenotyping and genotyping.


2008 ◽  
Vol 118 (2) ◽  
pp. 259-273 ◽  
Author(s):  
Silke Stracke ◽  
Grit Haseneyer ◽  
Jean-Baptiste Veyrieras ◽  
Hartwig H. Geiger ◽  
Sascha Sauer ◽  
...  

2005 ◽  
Vol 69 (2) ◽  
pp. 410-414 ◽  
Author(s):  
Masaya MURAKAMI ◽  
Akinori MATSUSHIKA ◽  
Motoyuki ASHIKARI ◽  
Takafumi YAMASHINO ◽  
Takeshi MIZUNO

1960 ◽  
Vol 50 (1-2) ◽  
pp. 161-172 ◽  
Author(s):  
H. J. Rose

When, in 1911, the first volume of JRS appeared it contained among other matter an article by W. Warde Fowler on ‘The Original Meaning of the word Sacer’. This was later (1920) reprinted in Roman Essays and Interpretations, 15–24, and is characteristic of its author, not only because of its keen insight into Roman ways of thought and full acquaintance with the relevant passages in Latin authors, but in its cautious and moderate use of the Comparative Method in dealing with the history of an ancient and imperfectly known religion. A scrap of Polynesian information on the meaning of ‘tabu’ was got from R. R. Marett, whose Threshold of Religion was then a new book (1909), and whom Warde Fowler knew and appreciated. About this time, Fowler, who was meditating an elaborate edition of Plutarch, a project which his failing sight compelled him to drop, passed on to me some notes on the Roman Questions (see below, p. 163), a typical piece of readiness to help and advise a young scholar. So far as his contributions to Roman religion went, the first two decades of this century were his flowering-time. Roman Festivals of the Period of the Republic had appeared in 1899; his Gifford Lectures of 1909–10 appeared in book form (The Religious Experience of the Roman People) just in time to have a cordial and appreciative review from E. R. Bevan in the first number of JRS.


PLoS Genetics ◽  
2010 ◽  
Vol 6 (5) ◽  
pp. e1000940 ◽  
Author(s):  
Benjamin Brachi ◽  
Nathalie Faure ◽  
Matt Horton ◽  
Emilie Flahauw ◽  
Adeline Vazquez ◽  
...  

Genetics ◽  
2008 ◽  
Vol 178 (4) ◽  
pp. 2433-2437 ◽  
Author(s):  
Sébastien Ducrocq ◽  
Delphine Madur ◽  
Jean-Baptiste Veyrieras ◽  
Létizia Camus-Kulandaivelu ◽  
Monika Kloiber-Maitz ◽  
...  

2018 ◽  
Vol 21 (5) ◽  
pp. 245-252
Author(s):  
Adilson Ricken Sch ◽  
Elcio Friske ◽  
Kaian Albino Cor ◽  
Jonatas Marcolin ◽  
Mayara Fabiana da ◽  
...  

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