scholarly journals How to Build a Biological Machine Using Engineering Materials and Methods

Biomimetics ◽  
2020 ◽  
Vol 5 (3) ◽  
pp. 35
Author(s):  
Alex Ellery
Keyword(s):  
3D Printing ◽  
Origin Of Life ◽  
Raw Material ◽  
The Moon ◽  
Electric Motors ◽  
Engineering Effort ◽  
The Origin Of Life ◽  
Universal Construction ◽  
Living Organisms ◽  
Available Resources

We present work in 3D printing electric motors from basic materials as the key to building a self-replicating machine to colonise the Moon. First, we explore the nature of the biological realm to ascertain its essence, particularly in relation to the origin of life when the inanimate became animate. We take an expansive view of this to ascertain parallels between the biological and the manufactured worlds. Life must have emerged from the available raw material on Earth and, similarly, a self-replicating machine must exploit and leverage the available resources on the Moon. We then examine these lessons to explore the construction of a self-replicating machine using a universal constructor. It is through the universal constructor that the actuator emerges as critical. We propose that 3D printing constitutes an analogue of the biological ribosome and that 3D printing may constitute a universal construction mechanism. Following a description of our progress in 3D printing motors, we suggest that this engineering effort can inform biology, that motors are a key facet of living organisms and illustrate the importance of motors in biology viewed from the perspective of engineering (in the Feynman spirit of “what I cannot create, I cannot understand”).

scholarly journals Serpentinite and the dawn of life

2011 ◽  
Vol 366 (1580) ◽  
pp. 2857-2869 ◽  
Author(s):  
Norman H. Sleep ◽  
Dennis K. Bird ◽  
Emily C. Pope
Keyword(s):  
Origin Of Life ◽  
Biological Material ◽  
Hydrothermal Vents ◽  
Chemical Potential ◽  
The Moon ◽  
Weakly Acid ◽  
The Earth ◽  
Potential Gradients ◽  
The Origin Of Life ◽  
Chemical Potential Gradients

Submarine hydrothermal vents above serpentinite produce chemical potential gradients of aqueous and ionic hydrogen, thus providing a very attractive venue for the origin of life. This environment was most favourable before Earth's massive CO 2 atmosphere was subducted into the mantle, which occurred tens to approximately 100 Myr after the moon-forming impact; thermophile to clement conditions persisted for several million years while atmospheric pCO 2 dropped from approximately 25 bar to below 1 bar. The ocean was weakly acid (pH ∼ 6), and a large pH gradient existed for nascent life with pH 9–11 fluids venting from serpentinite on the seafloor. Total CO 2 in water was significant so the vent environment was not carbon limited. Biologically important phosphate and Fe(II) were somewhat soluble during this period, which occurred well before the earliest record of preserved surface rocks approximately 3.8 billion years ago (Ga) when photosynthetic life teemed on the Earth and the oceanic pH was the modern value of approximately 8. Serpentinite existed by 3.9 Ga, but older rocks that might retain evidence of its presence have not been found. Earth's sequesters extensive evidence of Archaean and younger subducted biological material, but has yet to be exploited for the Hadean record.

scholarly journals Towards an evolutionary theory of the origin of life based on kinetics and thermodynamics

Open Biology ◽  
2013 ◽  
Vol 3 (11) ◽  
pp. 130156 ◽  
Author(s):  
Robert Pascal ◽  
Addy Pross ◽  
John D. Sutherland
Keyword(s):  
Origin Of Life ◽  
Energetic Cost ◽  
Dynamic Kinetic Stability ◽  
Thermodynamic Conditions ◽  
Evolutionary View ◽  
The Origin Of Life ◽  
Far From Equilibrium ◽  
Living Organisms ◽  
Sudden Transition ◽  
Physical Laws

A sudden transition in a system from an inanimate state to the living state—defined on the basis of present day living organisms—would constitute a highly unlikely event hardly predictable from physical laws. From this uncontroversial idea, a self-consistent representation of the origin of life process is built up, which is based on the possibility of a series of intermediate stages. This approach requires a particular kind of stability for these stages—dynamic kinetic stability (DKS)—which is not usually observed in regular chemistry, and which is reflected in the persistence of entities capable of self-reproduction. The necessary connection of this kinetic behaviour with far-from-equilibrium thermodynamic conditions is emphasized and this leads to an evolutionary view for the origin of life in which multiplying entities must be associated with the dissipation of free energy. Any kind of entity involved in this process has to pay the energetic cost of irreversibility, but, by doing so, the contingent emergence of new functions is made feasible. The consequences of these views on the studies of processes by which life can emerge are inferred.

Looking to the Rocks: Molecular Clues to the Origin of Life

2008 ◽  
Author(s):  
Susan M. Gaines ◽  
Geoffrey Eglinton ◽  
Jürgen Rullkötter
Keyword(s):  
Origin Of Life ◽  
Organic Compounds ◽  
High Pressures ◽  
Biological Evolution ◽  
Building Blocks ◽  
Apparent Paradox ◽  
Living Things ◽  
The Origin Of Life ◽  
Living Organisms ◽  
Prebiotic Earth

When Geoff started analyzing leaf waxes, he hadn’t consciously been looking for compounds in living organisms that are likely to survive in sediments, attacking his Derbyshire question from its other end, as is now a standard ploy in biomarker studies. But when he returned from the Canaries in 1961, it began to dawn on him that this was, in fact, what he had done. It also became apparent that he was not alone in his curiosity about the fate of organic compounds in things like rocks and tars. In fact, he had some very good company. Two prominent Nobel chemists gave talks in Glasgow that year, both posing fundamental questions about the stuff of life. And both, Geoff found, shared his maverick interest in the organic chemistry of rocks and oils. Sir Robert Robinson sought to resolve the apparent paradox of petroleum, which appeared to have formed from the buried detritus of plants and algae that had been subjected to high pressures and temperatures, and yet also contained organic compounds that were quite different from any known in plants and algae. And Melvin Calvin, who had discovered how CO2 is converted to organic molecules in photosynthesis, talked about the origin of life. Experiments done in the past decade had given new meaning to such questions, by showing that simple organic chemicals could form spontaneously under conditions similar to those that were likely to have prevailed on the early, prebiotic earth. The mystery of life’s origin suddenly seemed approachable, and discussions had shifted from the purely theoretical and philosophical toward the empirical, and from the paleontological to the chemical. On the contemporary earth, life has something of a monopoly on making organic compounds. But if amino acids and sugars, the basic building blocks of living things, were produced by other than living things on the early earth, before the advent of life, then one could imagine the world before photosynthesis, before bacterial chemosynthesis. One could imagine some form of chemical evolution that predated Darwin’s biological evolution and launched the simplest, most primitive of bacteria. And one could look to the oldest rocks for evidence.

Adsorption of amino acids and nucleic acid bases onto minerals: a few suggestions for prebiotic chemistry experiments

2012 ◽  
Vol 11 (4) ◽  
pp. 229-234 ◽  
Author(s):  
Dimas A.M. Zaia
Keyword(s):  
Amino Acids ◽  
Nucleic Acid ◽  
Origin Of Life ◽  
Prebiotic Chemistry ◽  
Synthesis Methods ◽  
Nucleic Acid Bases ◽  
The Earth ◽  
Protein Amino Acids ◽  
The Origin Of Life ◽  
Living Organisms

AbstractAmino acids and nucleic acid bases are very important for the living organisms. Thus, their protection from decomposition, selection, pre-concentration and formation of biopolymers are important issues for understanding the origin of life on the Earth. Minerals could have played all of these roles. This paper discusses several aspects involving the adsorption of amino acids and nucleic acid bases onto minerals under conditions that could have been found on the prebiotic Earth; in particular, we recommend the use of minerals, amino acids, nucleic acid bases and seawater ions in prebiotic chemistry experiments. Several experiments involving amino acids, nucleic acid bases, minerals and seawater ions are also suggested, including: (a) using well-characterized minerals and the standardization of the mineral synthesis methods; (b) using primary chondrite minerals (olivine, pyroxene, etc.) and clays modified with metals (Cu, Fe, Ni, Mo, Zn, etc.); (c) determination of the possible products of decomposition due to interactions of amino acids and nucleic acid bases with minerals; (d) using minerals with more organophilic characteristics; (e) using seawaters with different concentrations of ions (i.e. Na+, Ca2+, Mg2+, SO42− and Cl−); (f) using non-protein amino acids (AIB, α-ABA, β-ABA, γ-ABA and β-Ala and g) using nucleic acid bases other than adenine, thymine, uracil and cytosine. These experiments could be useful to clarify the role played by minerals in the origin of life on the Earth.

The Tempo and mode(S) of Prebiotic Evolution

1997 ◽  
Vol 161 ◽  
pp. 419-429 ◽  
Author(s):  
Antonio Lazcano
Keyword(s):  
Origin Of Life ◽  
Organic Compounds ◽  
Biological Evolution ◽  
Current Evidence ◽  
Early Diversification ◽  
Time Period ◽  
The Galaxy ◽  
History Of ◽  
Widespread Phenomenon ◽  
The Origin Of Life

AbstractDifferent current ideas on the origin of life are critically examined. Comparison of the now fashionable FeS/H2S pyrite-based autotrophic theory of the origin of life with the heterotrophic viewpoint suggest that the later is still the most fertile explanation for the emergence of life. However, the theory of chemical evolution and heterotrophic origins of life requires major updating, which should include the abandonment of the idea that the appearance of life was a slow process involving billions of years. Stability of organic compounds and the genetics of bacteria suggest that the origin and early diversification of life took place in a time period of the order of 10 million years. Current evidence suggest that the abiotic synthesis of organic compounds may be a widespread phenomenon in the Galaxy and may have a deterministic nature. However, the history of the biosphere does not exhibits any obvious trend towards greater complexity or «higher» forms of life. Therefore, the role of contingency in biological evolution should not be understimated in the discussions of the possibilities of life in the Universe.

Photochemical Evolution of Interstellar/Precometary Organic Material

1997 ◽  
Vol 161 ◽  
pp. 23-47 ◽  
Author(s):  
Louis J. Allamandola ◽  
Max P. Bernstein ◽  
Scott A. Sandford
Keyword(s):  
Origin Of Life ◽  
Building Blocks ◽  
Complex Species ◽  
Infrared Observations ◽  
Interstellar Ice ◽  
Polycyclic Aromatic ◽  
Ultraviolet Photolysis ◽  
The Origin Of Life ◽  
Simple Molecules ◽  
Complex Organic

AbstractInfrared observations, combined with realistic laboratory simulations, have revolutionized our understanding of interstellar ice and dust, the building blocks of comets. Since comets are thought to be a major source of the volatiles on the primative earth, their organic inventory is of central importance to questions concerning the origin of life. Ices in molecular clouds contain the very simple molecules H2O, CH3OH, CO, CO2, CH4, H2, and probably some NH3and H2CO, as well as more complex species including nitriles, ketones, and esters. The evidence for these, as well as carbonrich materials such as polycyclic aromatic hydrocarbons (PAHs), microdiamonds, and amorphous carbon is briefly reviewed. This is followed by a detailed summary of interstellar/precometary ice photochemical evolution based on laboratory studies of realistic polar ice analogs. Ultraviolet photolysis of these ices produces H2, H2CO, CO2, CO, CH4, HCO, and the moderately complex organic molecules: CH3CH2OH (ethanol), HC(= O)NH2(formamide), CH3C(= O)NH2(acetamide), R-CN (nitriles), and hexamethylenetetramine (HMT, C6H12N4), as well as more complex species including polyoxymethylene and related species (POMs), amides, and ketones. The ready formation of these organic species from simple starting mixtures, the ice chemistry that ensues when these ices are mildly warmed, plus the observation that the more complex refractory photoproducts show lipid-like behavior and readily self organize into droplets upon exposure to liquid water suggest that comets may have played an important role in the origin of life.

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