scholarly journals Identification and Characterization of Aspergillus nidulans Mutants Impaired in Asexual Development under Phosphate Stress

Cells ◽  
2019 ◽  
Vol 8 (12) ◽  
pp. 1520 ◽  
Author(s):  
Ainara Otamendi ◽  
Eduardo A. Espeso ◽  
Oier Etxebeste

The transcription factor BrlA plays a central role in the production of asexual spores (conidia) in the fungus Aspergillus nidulans. BrlA levels are controlled by signal transducers known collectively as UDAs. Furthermore, it governs the expression of CDP regulators, which control most of the morphological transitions leading to the production of conidia. In response to the emergence of fungal cells in the air, the main stimulus triggering conidiation, UDA mutants such as the flbB deletant fail to induce brlA expression. Nevertheless, ΔflbB colonies conidiate profusely when they are cultured on a medium containing high H2PO4− concentrations, suggesting that the need for FlbB activity is bypassed. We used this phenotypic trait and an UV-mutagenesis procedure to isolate ΔflbB mutants unable to conidiate under these stress conditions. Transformation of mutant FLIP166 with a wild-type genomic library led to the identification of the putative transcription factor SocA as a multicopy suppressor of the FLIP (Fluffy, aconidial, In Phosphate) phenotype. Deregulation of socA altered both growth and developmental patterns. Sequencing of the FLIP166 genome enabled the identification and characterization of PmtCP282L as the recessive mutant form responsible for the FLIP phenotype. Overall, results validate this strategy for identifying genes/mutations related to the control of conidiation.

2019 ◽  
Author(s):  
Olivera Grujic ◽  
Tanya N. Phung ◽  
Soo Bin Kwon ◽  
Adriana Arneson ◽  
Yuju Lee ◽  
...  

AbstractAnnotations of evolutionarily constraint provide important information for variant prioritization. Genome-wide maps of epigenomic marks and transcription factor binding provide complementary information for interpreting a subset of such prioritized variants. Here we developed the Constrained Non-Exonic Predictor (CNEP) to quantify the evidence of each base in the human genome being in a constrained non-exonic element from over 60,000 epigenomic and transcription factor binding features. We find that the CNEP score outperforms baseline and related existing scores at predicting constrained non-exonic bases from such data. However, a subset of such bases are still not well predicted by CNEP. We developed a complementary Conservation Signature Score by CNEP (CSS-CNEP) using conservation state and constrained element annotations that is predictive of those bases. Using human genetic variation, regulatory sequence motifs, mouse epigenomic data, and retrospectively considered additional human data we further characterize the nature of constrained non-exonic bases with low CNEP scores.


2003 ◽  
Vol 308 (4) ◽  
pp. 744-749 ◽  
Author(s):  
Emmanuel Derudder ◽  
Arnaud Laferté ◽  
Valérie Ferreira ◽  
Zohair Mishal ◽  
Véronique Baud ◽  
...  

Development ◽  
2000 ◽  
Vol 127 (11) ◽  
pp. 2447-2459 ◽  
Author(s):  
S.M. Robertson ◽  
M. Kennedy ◽  
J.M. Shannon ◽  
G. Keller

In this report, we describe the identification and characterization of an early embryoid body-derived colony, termed the transitional colony, which contains cell populations undergoing the commitment of mesoderm to the hematopoietic and endothelial lineages. Analysis of individual transitional colonies indicated that they express Brachyury as well as flk-1, SCL/tal-1, GATA-1, (beta)H1 and (beta)major reflecting the combination of mesodermal, hematopoietic and endothelial populations. This pattern differs from that found in the previously described hemangioblast-derived blast cell colonies in that they typically lacked Brachyury expression, consistent with their post-mesodermal stage of development (Kennedy, M., Firpo, M., Choi, K., Wall, C., Robertson, S., Kabrun, N. and Keller, G. (1997) Nature 386, 488–493). Replating studies demonstrated that transitional colonies contain low numbers of primitive erythroid precursors as well as a subset of precursors associated with early stage definitive hematopoiesis. Blast cell colonies contain higher numbers and a broader spectrum of definitive precursors than found in the transitional colonies. ES cells homozygous null for the SCL/tal-1 gene, a transcription factor known to be essential for development of the primitive and definitive hematopoietic systems, were not able to form blast colonies but did form transitional colonies. Together these findings suggest that the transitional colony represents a stage of development earlier than the blast cell colony and one that uniquely defines the requirement for a functional SCL/tal-1 gene for the progression to hematopoietic commitment.


2006 ◽  
Vol 282 (8) ◽  
pp. 5761-5769 ◽  
Author(s):  
Charles A. S. Banks ◽  
Stephanie E. Kong ◽  
Henrik Spahr ◽  
Laurence Florens ◽  
Skylar Martin-Brown ◽  
...  

Genes ◽  
2018 ◽  
Vol 9 (1) ◽  
pp. 54 ◽  
Author(s):  
Ruoqiu Wang ◽  
Peng Zhao ◽  
Nana Kong ◽  
Ruize Lu ◽  
Yue Pei ◽  
...  

Microbiology ◽  
1997 ◽  
Vol 143 (2) ◽  
pp. 429-435 ◽  
Author(s):  
N. Ishii ◽  
M. Yamamoto ◽  
F. Yoshihara ◽  
M. Arisawa ◽  
Y. Aoki

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