scholarly journals Istex: A Database of Twenty Million Scientific Papers with a Mining Tool Which Uses Named Entities

Information ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 178 ◽  
Author(s):  
Denis Maurel ◽  
Enza Morale ◽  
Nicolas Thouvenin ◽  
Patrice Ringot ◽  
Angel Turri
Keyword(s):  
Full Text ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Good Precision ◽  
Named Entities ◽  
French Government ◽  
Named Entity ◽  
Scientific Papers ◽  
Mining Tool ◽  
Short Time

Istex is a database of twenty million full text scientific papers bought by the French Government for the use of academic libraries. Papers are usually searched for by the title, authors, keywords or possibly the abstract. To authorize new types of queries of Istex, we implemented a system of named entity recognition on all papers and we offer users the possibility to run searches on these entities. After the presentation of the French Istex project, we detail in this paper the named entity recognition with CasEN, a cascade of graphs, implemented on the Unitex Software. CasEN exists in French, but not in English. The first challenge was to build a new cascade in a short time. The results of its evaluation showed a good Precision measure, even if the Recall was not very good. The Precision was very important for this project to ensure it did not return unwanted papers by a query. The second challenge was the implementation of Unitex to parse around twenty millions of documents. We used a dockerized application. Finally, we explain also how to query the resulting Named entities in the Istex website.

scholarly journals An Annotated Corpus of Crime-Related Portuguese Documents for NLP and Machine Learning Processing

Data ◽  
2021 ◽  
Vol 6 (7) ◽  
pp. 71
Author(s):  
Gonçalo Carnaz ◽  
Mário Antunes ◽  
Vitor Beires Nogueira
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Automatic Identification ◽  
Named Entities ◽  
Related Data ◽  
Named Entity ◽  
Chain Of Custody ◽  
Evidence Collection

Criminal investigations collect and analyze the facts related to a crime, from which the investigators can deduce evidence to be used in court. It is a multidisciplinary and applied science, which includes interviews, interrogations, evidence collection, preservation of the chain of custody, and other methods and techniques of investigation. These techniques produce both digital and paper documents that have to be carefully analyzed to identify correlations and interactions among suspects, places, license plates, and other entities that are mentioned in the investigation. The computerized processing of these documents is a helping hand to the criminal investigation, as it allows the automatic identification of entities and their relations, being some of which difficult to identify manually. There exists a wide set of dedicated tools, but they have a major limitation: they are unable to process criminal reports in the Portuguese language, as an annotated corpus for that purpose does not exist. This paper presents an annotated corpus, composed of a collection of anonymized crime-related documents, which were extracted from official and open sources. The dataset was produced as the result of an exploratory initiative to collect crime-related data from websites and conditioned-access police reports. The dataset was evaluated and a mean precision of 0.808, recall of 0.722, and F1-score of 0.733 were obtained with the classification of the annotated named-entities present in the crime-related documents. This corpus can be employed to benchmark Machine Learning (ML) and Natural Language Processing (NLP) methods and tools to detect and correlate entities in the documents. Some examples are sentence detection, named-entity recognition, and identification of terms related to the criminal domain.

scholarly journals TEI-friendly annotation scheme for medieval named entities: a case on a Spanish medieval corpus

2021 ◽  
Author(s):  
Elena Álvarez-Mellado ◽  
María Luisa Díez-Platas ◽  
Pablo Ruiz-Fabo ◽  
Helena Bermúdez ◽  
Salvador Ros ◽  
...  
Keyword(s):  
Historical Data ◽  
Named Entity Recognition ◽  
Rich Source ◽  
Entity Recognition ◽  
Historical Evidence ◽  
Annotation Scheme ◽  
Named Entities ◽  
General Domain ◽  
Named Entity ◽  
Entity Annotation

AbstractMedieval documents are a rich source of historical data. Performing named-entity recognition (NER) on this genre of texts can provide us with valuable historical evidence. However, traditional NER categories and schemes are usually designed with modern documents in mind (i.e. journalistic text) and the general-domain NER annotation schemes fail to capture the nature of medieval entities. In this paper we explore the challenges of performing named-entity annotation on a corpus of Spanish medieval documents: we discuss the mismatches that arise when applying traditional NER categories to a corpus of Spanish medieval documents and we propose a novel humanist-friendly TEI-compliant annotation scheme and guidelines intended to capture the particular nature of medieval entities.

scholarly journals A Survey of Arabic Named Entity Recognition and Classification

2014 ◽  
Vol 40 (2) ◽  
pp. 469-510 ◽  
Author(s):  
Khaled Shaalan
Keyword(s):  
Language Processing ◽  
Named Entity Recognition ◽  
Relevant Information ◽  
Arabic Language ◽  
Entity Recognition ◽  
Named Entities ◽  
Linguistic Resources ◽  
Named Entity ◽  
To Receive ◽  
Made In

As more and more Arabic textual information becomes available through the Web in homes and businesses, via Internet and Intranet services, there is an urgent need for technologies and tools to process the relevant information. Named Entity Recognition (NER) is an Information Extraction task that has become an integral part of many other Natural Language Processing (NLP) tasks, such as Machine Translation and Information Retrieval. Arabic NER has begun to receive attention in recent years. The characteristics and peculiarities of Arabic, a member of the Semitic languages family, make dealing with NER a challenge. The performance of an Arabic NER component affects the overall performance of the NLP system in a positive manner. This article attempts to describe and detail the recent increase in interest and progress made in Arabic NER research. The importance of the NER task is demonstrated, the main characteristics of the Arabic language are highlighted, and the aspects of standardization in annotating named entities are illustrated. Moreover, the different Arabic linguistic resources are presented and the approaches used in Arabic NER field are explained. The features of common tools used in Arabic NER are described, and standard evaluation metrics are illustrated. In addition, a review of the state of the art of Arabic NER research is discussed. Finally, we present our conclusions. Throughout the presentation, illustrative examples are used for clarification.

scholarly journals SicknessMiner: a deep-learning-driven text-mining tool to abridge disease-disease associations

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Nícia Rosário-Ferreira ◽  
Victor Guimarães ◽  
Vítor S. Costa ◽  
Irina S. Moreira
Keyword(s):  
Text Mining ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Named Entity ◽  
Disease Similarity ◽  
Disease Associations ◽  
Named Entity Normalization ◽  
Mining Tool ◽  
Or Gene ◽  
Text Mining Tool

Abstract Background Blood cancers (BCs) are responsible for over 720 K yearly deaths worldwide. Their prevalence and mortality-rate uphold the relevance of research related to BCs. Despite the availability of different resources establishing Disease-Disease Associations (DDAs), the knowledge is scattered and not accessible in a straightforward way to the scientific community. Here, we propose SicknessMiner, a biomedical Text-Mining (TM) approach towards the centralization of DDAs. Our methodology encompasses Named Entity Recognition (NER) and Named Entity Normalization (NEN) steps, and the DDAs retrieved were compared to the DisGeNET resource for qualitative and quantitative comparison. Results We obtained the DDAs via co-mention using our SicknessMiner or gene- or variant-disease similarity on DisGeNET. SicknessMiner was able to retrieve around 92% of the DisGeNET results and nearly 15% of the SicknessMiner results were specific to our pipeline. Conclusions SicknessMiner is a valuable tool to extract disease-disease relationship from RAW input corpus.

scholarly journals NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Kanix Wang ◽  
Robert Stevens ◽  
Halima Alachram ◽  
Yu Li ◽  
Larisa Soldatova ◽  
...  
Keyword(s):  
Named Entity Recognition ◽  
Entity Recognition ◽  
Analysis Tool ◽  
Automated Extraction ◽  
Named Entities ◽  
Named Entity ◽  
Automated Knowledge ◽  
Biomedical Texts ◽  
Machine Reading ◽  
Biomedical Named Entity Recognition

AbstractMachine reading (MR) is essential for unlocking valuable knowledge contained in millions of existing biomedical documents. Over the last two decades1,2, the most dramatic advances in MR have followed in the wake of critical corpus development3. Large, well-annotated corpora have been associated with punctuated advances in MR methodology and automated knowledge extraction systems in the same way that ImageNet4 was fundamental for developing machine vision techniques. This study contributes six components to an advanced, named entity analysis tool for biomedicine: (a) a new, Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguages of molecular biology, genetics, biochemistry, and medicine; (b) detailed guidelines for human experts annotating hundreds of named entity classes; (c) pictographs for all named entities, to simplify the burden of annotation for curators; (d) an original, annotated corpus comprising 35,865 sentences, which encapsulate 190,679 named entities and 43,438 events connecting two or more entities; (e) validated, off-the-shelf, named entity recognition (NER) automated extraction, and; (f) embedding models that demonstrate the promise of biomedical associations embedded within this corpus.

scholarly journals A Probability based Classification of Named Entities for Malayalam Language combining Word, Part of Speech and Lexicalized features

2019 ◽  
Vol 8 (2) ◽  
pp. 839-842
Keyword(s):  
Named Entity Recognition ◽  
Entity Recognition ◽  
Supervised Machine Learning ◽  
Named Entities ◽  
Named Entity ◽  
Domain Specific ◽  
Part Of Speech ◽  
Classification Probability ◽  
Malayalam Language

Named Entity Recognition is the process wherein named entities which are designators of a sentence are identified. Designators of a sentence are domain specific. The proposed system identifies named entities in Malayalam language belonging to tourism domain which generally includes names of persons, places, organizations, dates etc. The system uses word, part of speech and lexicalized features to find the probability of a word belonging to a named entity category and to do the appropriate classification. Probability is calculated based on supervised machine learning using word and part of speech features present in a tagged training corpus and using certain rules applied based on lexicalized features.

scholarly journals Recursively Binary Modification Model for Nested Named Entity Recognition

2020 ◽  
Vol 34 (05) ◽  
pp. 8164-8171
Author(s):  
Bing Li ◽  
Shifeng Liu ◽  
Yifang Sun ◽  
Wei Wang ◽  
Xiang Zhao
Keyword(s):  
Strong Evidence ◽  
State Of The Art ◽  
Named Entity Recognition ◽  
Bayesian Framework ◽  
Entity Recognition ◽  
Named Entities ◽  
Named Entity ◽  
Nested Structures ◽  
Benchmark Datasets ◽  
Head Component

Recently, there has been an increasing interest in identifying named entities with nested structures. Existing models only make independent typing decisions on the entire entity span while ignoring strong modification relations between sub-entity types. In this paper, we present a novel Recursively Binary Modification model for nested named entity recognition. Our model utilizes the modification relations among sub-entities types to infer the head component on top of a Bayesian framework and uses entity head as a strong evidence to determine the type of the entity span. The process is recursive, allowing lower-level entities to help better model those on the outer-level. To the best of our knowledge, our work is the first effort that uses modification relation in nested NER task. Extensive experiments on four benchmark datasets demonstrate that our model outperforms state-of-the-art models in nested NER tasks, and delivers competitive results with state-of-the-art models in flat NER task, without relying on any extra annotations or NLP tools.

Named Entity Recognition and transliteration in Bengali

2007 ◽  
Vol 30 (1) ◽  
pp. 95-114 ◽  
Author(s):  
Asif Ekbal ◽  
Sudip Kumar Naskar ◽  
Sivaji Bandyopadhyay
Keyword(s):  
Channel Model ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Linguistic Knowledge ◽  
Linguistic Features ◽  
Named Entities ◽  
Named Entity ◽  
The Third ◽  
News Corpus ◽  
Model C

The paper reports about the development of a Named Entity Recognition (NER) system in Bengali using a tagged Bengali news corpus and the subsequent transliteration of the recognized Bengali Named Entities (NEs) into English. Three different models of the NER have been developed. A semi-supervised learning method has been adopted to develop the first two models, one without linguistic features (Model A) and the other with linguistic features (Model B). The third one (Model C) is based on statistical Hidden Markov Model. A modified joint-source channel model has been used along with a number of alternatives to generate the English transliterations of Bengali NEs and vice-versa. The transliteration models learn the mappings from the bilingual training sets optionally guided by linguistic knowledge in the form of conjuncts and diphthongs in Bengali and their representations in English. The NER system has demonstrated the highest average Recall, Precision and F-Score values of 89.62%, 78.67% and 83.79% respectively in Model C. Evaluation of the proposed transliteration models demonstrated that the modified joint source-channel model performs best in terms of evaluation metrics for person and location names for both Bengali to English (B2E) transliteration and English to Bengali transliteration (E2B). The use of the linguistic knowledge during training of the transliteration models improves performance.

scholarly journals Nested Named Entity Recognition via Second-best Sequence Learning and Decoding

2020 ◽  
Vol 8 ◽  
pp. 605-620 ◽  
Author(s):  
Takashi Shibuya ◽  
Eduard Hovy
Keyword(s):  
Random Field ◽  
Sequence Learning ◽  
Conditional Random Field ◽  
Named Entity Recognition ◽  
Neural Model ◽  
Entity Recognition ◽  
Named Entities ◽  
Second Best ◽  
Named Entity ◽  
Better Than

When an entity name contains other names within it, the identification of all combinations of names can become difficult and expensive. We propose a new method to recognize not only outermost named entities but also inner nested ones. We design an objective function for training a neural model that treats the tag sequence for nested entities as the second best path within the span of their parent entity. In addition, we provide the decoding method for inference that extracts entities iteratively from outermost ones to inner ones in an outside-to-inside way. Our method has no additional hyperparameters to the conditional random field based model widely used for flat named entity recognition tasks. Experiments demonstrate that our method performs better than or at least as well as existing methods capable of handling nested entities, achieving F1-scores of 85.82%, 84.34%, and 77.36% on ACE-2004, ACE-2005, and GENIA datasets, respectively.

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