scholarly journals Optical Force on a Metal Nanorod Exerted by a Photonic Jet

Nanomaterials ◽  
2022 ◽  
Vol 12 (2) ◽  
pp. 251
Author(s):  
Bojian Wei ◽  
Shuhong Gong ◽  
Renxian Li ◽  
Igor V. Minin ◽  
Oleg V. Minin ◽  
...  
Keyword(s):  
Open Source Software ◽  
Longitudinal Force ◽  
Dipole Approximation ◽  
Transverse Force ◽  
Optical Force ◽  
New Materials ◽  
Maximum Value ◽  
Open Source Software Package ◽  
Photonic Jet ◽  
Positive Force

In this article, we study the optical force exerted on nanorods. In recent years, the capture of micro-nanoparticles has been a frontier topic in optics. A Photonic Jet (PJ) is an emerging subwavelength beam with excellent application prospects. This paper studies the optical force exerted by photonic jets generated by a plane wave illuminating a Generalized Luneburg Lens (GLLs) on nanorods. In the framework of the dipole approximation, the optical force on the nanorods is studied. The electric field of the photonic jet is calculated by the open-source software package DDSCAT developed based on the Discrete Dipole Approximation (DDA). In this paper, the effects of the nanorods’ orientation and dielectric constant on the transverse force Fx and longitudinal force Fy are analyzed. Numerical results show that the maximum value of the positive force and the negative force are equal and appear alternately at the position of the photonic jet. Therefore, to capture anisotropic nanoscale-geometries (nanorods), it is necessary to adjust the position of GLLs continuously. It is worth emphasizing that manipulations with nanorods will make it possible to create new materials at the nanoscale.

OnPoint: A package for online experiments in motor control and motor learning

2020 ◽  
Author(s):  
Jonathan Sanching Tsay ◽  
Alan S. Lee ◽  
Guy Avraham ◽  
Darius E. Parvin ◽  
Jeremy Ho ◽  
...  
Keyword(s):  
Motor Control ◽  
Motor Learning ◽  
Open Source Software ◽  
Research Progress ◽  
Global Pandemic ◽  
Large N ◽  
Open Source Software Package ◽  
Potential Applications ◽  
Temporal And Spatial ◽  
The One

Motor learning experiments are typically run in-person, exploiting finely calibrated setups (digitizing tablets, robotic manipulandum, full VR displays) that provide high temporal and spatial resolution. However, these experiments come at a cost, not limited to the one-time expense of purchasing equipment but also the substantial time devoted to recruiting participants and administering the experiment. Moreover, exceptional circumstances that limit in-person testing, such as a global pandemic, may halt research progress. These limitations of in-person motor learning research have motivated the design of OnPoint, an open-source software package for motor control and motor learning researchers. As with all online studies, OnPoint offers an opportunity to conduct large-N motor learning studies, with potential applications to do faster pilot testing, replicate previous findings, and conduct longitudinal studies (GitHub repository: https://github.com/alan-s-lee/OnPoint).

scholarly journals Integration of enabling methods for the automated flow preparation of piperazine-2-carboxamide

2014 ◽  
Vol 10 ◽  
pp. 641-652 ◽  
Author(s):  
Richard J Ingham ◽  
Claudio Battilocchio ◽  
Joel M Hawkins ◽  
Steven V Ley
Keyword(s):  
Open Source ◽  
Open Source Software ◽  
Software Package ◽  
Flow Chemistry ◽  
Raspberry Pi ◽  
Step Flow ◽  
Simultaneous Control ◽  
Open Source Software Package

Here we describe the use of a new open-source software package and a Raspberry Pi® computer for the simultaneous control of multiple flow chemistry devices and its application to a machine-assisted, multi-step flow preparation of pyrazine-2-carboxamide – a component of Rifater®, used in the treatment of tuberculosis – and its reduced derivative piperazine-2-carboxamide.

scholarly journals ogttMetrics: Data structures and algorithms for oral glucose tolerance tests

F1000Research ◽  
2017 ◽  
Vol 6 ◽  
pp. 684
Author(s):  
Benjamin J. Stubbs ◽  
Keith Frankston ◽  
Marcel Ramos ◽  
Nancy Laranjo ◽  
Frank M. Sacks ◽  
...  
Keyword(s):  
Glucose Tolerance ◽  
Open Source Software ◽  
Oral Glucose ◽  
Oral Glucose Tolerance ◽  
Estimation Of Parameters ◽  
Large Clinical Trial ◽  
Oral Glucose Tolerance Tests ◽  
Open Source Software Package ◽  
Glucose Tolerance Tests ◽  
Data Structures And Algorithms

We describe an open source software package, ogttMetrics, to compute diverse measures of glucose metabolism derived from oral glucose tolerance tests (OGTTs). Tools are provided to organize, visualize and compare OGTT data from large cohorts. Numerical difficulties in estimation of parameters of the Bergman minimal model are described, and in one large clinical trial, the simpler closed form index of Matsuda is observed to lead to similar rankings of individuals with respect to insulin sensitivity, and similar inferences concerning effects of modifications to carbohydrate content and glycemic index of experimental diets.

scholarly journals An open source software package for primality testing of numbers of the form p2^n+1, with no constraints on the relative sizes of p and 2^n

2018 ◽  
Author(s):  
Tejas R. Rao
Keyword(s):  
Open Source ◽  
Open Source Software ◽  
Software Package ◽  
Primality Testing ◽  
Fermat Number ◽  
Open Source Software Package ◽  
Sierpinski Numbers ◽  
Efficient Software

We develop an efficient software package to test for the primality of p2^n+1, p prime and p>2^n. This aids in the determination of large, non-Sierpinski numbers p, for prime p, and in cryptography. It furthermore uniquely allows for the computation of the smallest n such that p2^n+1 is prime when p is large. We compute primes of this form for the first one million primes p and find four primes of the form above 1000 digits. The software may also be used to test whether p2^n+1 divides a generalized fermat number base 3.

scholarly journals Modelling nonlinear dynamics of interacting tipping elements on complex networks: the PyCascades package

2021 ◽  
Author(s):  
Nico Wunderling ◽  
Jonathan Krönke ◽  
Valentin Wohlfarth ◽  
Jan Kohler ◽  
Jobst Heitzig ◽  
...  
Keyword(s):  
Dynamical Systems ◽  
Open Source Software ◽  
Software Package ◽  
Model Systems ◽  
Stochastic Dynamical Systems ◽  
Moisture Recycling ◽  
Modelling Framework ◽  
Different Types ◽  
Open Source Software Package ◽  
The Individual

AbstractTipping elements occur in various systems such as in socio-economics, ecology and the climate system. In many cases, the individual tipping elements are not independent of each other, but they interact across scales in time and space. To model systems of interacting tipping elements, we here introduce the PyCascades open source software package for studying interacting tipping elements (10.5281/zenodo.4153102). PyCascades is an object-oriented and easily extendable package written in the programming language Python. It allows for investigating under which conditions potentially dangerous cascades can emerge between interacting dynamical systems, with a focus on tipping elements. With PyCascades it is possible to use different types of tipping elements such as double-fold and Hopf types and interactions between them. PyCascades can be applied to arbitrary complex network structures and has recently been extended to stochastic dynamical systems. This paper provides an overview of the functionality of PyCascades by introducing the basic concepts and the methodology behind it. In the end, three examples are discussed, showing three different applications of the software package. First, the moisture recycling network of the Amazon rainforest is investigated. Second, a model of interacting Earth system tipping elements is discussed. And third, the PyCascades modelling framework is applied to a global trade network.

The Hydrodynamic Forces Acting on a Long Flexible Circular Cylinder Responding to VIV

2006 ◽  
Author(s):  
P. W. Bearman ◽  
F. J. Huera Huarte ◽  
J. R. Chaplin
Keyword(s):  
Circular Cylinder ◽  
Cross Flow ◽  
Element Model ◽  
Transverse Force ◽  
Diameter Ratio ◽  
Mass Ratio ◽  
Force Coefficients ◽  
Fluid Forces ◽  
Maximum Value ◽  
Vibration Prediction

Distributions of the fluid forces acting along a long flexible circular cylinder free to respond in-line and transverse to a stepped current are presented. Forces are calculated using a finite element model of the cylinder with measured responses providing the input. The length to diameter ratio of the model used was 469, the mass ratio was 3 and the Reynolds number could be varied up to maximum value of approximately 2.6 · 104. Fluid force coefficients for two cases are presented: in the first, the dominant modes are the 2nd cross-flow and the 4th in line. For the second case the leading modes are the 7th and 12th respectively. In general, transverse force coefficients and in-line drag coefficients are found to be larger than those measured for short sections of cylinder undergoing free and forced one and two-dimensional motions. It is anticipated that the results will be of value to developers of vortex-induced vibration prediction methods.

scholarly journals Development and Evaluation of an Open-Source Software Package “CGITA” for Quantifying Tumor Heterogeneity with Molecular Images

2014 ◽  
Vol 2014 ◽  
pp. 1-9 ◽  
Author(s):  
Yu-Hua Dean Fang ◽  
Chien-Yu Lin ◽  
Meng-Jung Shih ◽  
Hung-Ming Wang ◽  
Tsung-Ying Ho ◽  
...  
Keyword(s):  
Open Source ◽  
Texture Analysis ◽  
Open Source Software ◽  
Software Package ◽  
Tumor Heterogeneity ◽  
Locally Advanced ◽  
Image Texture ◽  
Pixel Intensity ◽  
Open Source Software Package ◽  
Molecular Images

Background. The quantification of tumor heterogeneity with molecular images, by analyzing the local or global variation in the spatial arrangements of pixel intensity with texture analysis, possesses a great clinical potential for treatment planning and prognosis. To address the lack of available software for computing the tumor heterogeneity on the public domain, we develop a software package, namely, Chang-Gung Image Texture Analysis (CGITA) toolbox, and provide it to the research community as a free, open-source project.Methods. With a user-friendly graphical interface, CGITA provides users with an easy way to compute more than seventy heterogeneity indices. To test and demonstrate the usefulness of CGITA, we used a small cohort of eighteen locally advanced oral cavity (ORC) cancer patients treated with definitive radiotherapies.Results. In our case study of ORC data, we found that more than ten of the current implemented heterogeneity indices outperformed SUVmeanfor outcome prediction in the ROC analysis with a higher area under curve (AUC). Heterogeneity indices provide a better area under the curve up to 0.9 than the SUVmeanand TLG (0.6 and 0.52, resp.).Conclusions. CGITA is a free and open-source software package to quantify tumor heterogeneity from molecular images. CGITA is available for free for academic use athttp://code.google.com/p/cgita.

scholarly journals P.R.E.S.S. — AN R-PACKAGE FOR EXPLORING RESIDUAL-LEVEL PROTEIN STRUCTURAL STATISTICS

2012 ◽  
Vol 10 (03) ◽  
pp. 1242007 ◽  
Author(s):  
YUANYUAN HUANG ◽  
STEPHEN BONETT ◽  
ANDRZEJ KLOCZKOWSKI ◽  
ROBERT JERNIGAN ◽  
ZHIJUN WU
Keyword(s):  
Structural Properties ◽  
Open Source Software ◽  
Protein Structures ◽  
R Package ◽  
Residue Level ◽  
Large Set ◽  
Torsion Angles ◽  
Residual Level ◽  
Open Source Software Package ◽  
User Friendly

P.R.E.S.S. is an R-package developed to allow researchers to get access to and manipulate a large set of statistical data on protein residue-level structural properties such as residue-level virtual bond lengths, virtual bond angles, and virtual torsion angles. A large set of high-resolution protein structures is downloaded and surveyed. Their residue-level structural properties are calculated and documented. The statistical distributions and correlations of these properties can be queried and displayed. Tools are also provided for modeling and analyzing a given structure in terms of its residue-level structural properties. In particular, new tools for computing residue-level statistical potentials and displaying residue-level Ramachandran-like plots are developed for structural analysis and refinement. P.R.E.S.S. has been released in R as an open source software package, with a user-friendly GUI, accessible and executable by a public user in any R environment. P.R.E.S.S. can also be downloaded directly at http://www.math.iastate.edu/press/ .

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