Faculty Opinions recommendation of Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae.

Author(s):  
Jonathan R Warner
2003 ◽  
Vol 100 (7) ◽  
pp. 3889-3894 ◽  
Author(s):  
Y. Arava ◽  
Y. Wang ◽  
J. D. Storey ◽  
C. L. Liu ◽  
P. O. Brown ◽  
...  

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Irene Díaz-López ◽  
René Toribio ◽  
Juan José Berlanga ◽  
Iván Ventoso

Loading of mRNA onto the ribosomal 43S pre-initiation complex (PIC) and its subsequent scanning require the removal of the secondary structure of the by RNA helicases such as eIF4A. However, the topology and mechanics of the scanning complex bound to mRNA (48S-PIC) and the influence of its solvent-side composition on the scanning process are poorly known. Here, we found that the ES6S region of the 48S-PIC constitutes an extended binding channel for eIF4A-mediated unwinding of mRNA and scanning. Blocking ES6S inhibited the cap-dependent translation of mRNAs that have structured 5′ UTRs (including G-quadruplexes), many of which are involved in signal transduction and growth, but it did not affect IRES-driven translation. Genome-wide analysis of mRNA translation revealed a great diversity in ES6S-mediated scanning dependency. Our data suggest that mRNA threading into the ES6S region makes scanning by 48S PIC slower but more processive. Hence, we propose a topological and functional model of the scanning 48S-PIC.


2019 ◽  
Author(s):  
Xuan G. Luong ◽  
Enrico Maria Daldello ◽  
Gabriel Rajkovic ◽  
Cai-Rong Yang ◽  
Marco Conti

SummaryDuring oocyte maturation, changes in gene expression depend exclusively on translation and degradation of maternal mRNAs rather than transcription. Execution of this translation program is essential for assembling the molecular machinery required for meiotic progression, fertilization, and embryo development. With the present study, we used a RiboTag/RNA-Seq approach to explore the timing of maternal mRNA translation in quiescent oocytes as well as in oocytes progressing through the first meiotic division. This genome-wide analysis reveals a global switch in maternal mRNA translation coinciding with oocyte re-entry into the meiotic cell cycle. Messenger RNAs whose translation is highly active in quiescent oocytes invariably become repressed during meiotic re-entry, whereas transcripts repressed in quiescent oocytes become activated. Experimentally, we have defined the exact timing of the switch, the repressive function of CPE elements, and identified a novel role for CPEB1 in maintaining constitutive translation of a large group of maternal mRNAs during maturation.


2012 ◽  
Vol 87 (Suppl_1) ◽  
pp. 88-88 ◽  
Author(s):  
Marco Conti ◽  
Jing Chen ◽  
Fang Xie ◽  
Chi-Jen Lin ◽  
Kathleen Horner

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