Faculty Opinions recommendation of Burkholderia phytofirmans PsJN induces long-term metabolic and transcriptional changes involved in Arabidopsis thaliana salt tolerance.

Author(s):  
Leo Eberl
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Mallory Paynich Murray ◽  
Isaac Engel ◽  
Grégory Seumois ◽  
Sara Herrera-De la Mata ◽  
Sandy Lucette Rosales ◽  
...  

AbstractInvariant natural killer T cells (iNKT cells) differentiate into thymic and peripheral NKT1, NKT2 and NKT17 subsets. Here we use RNA-seq and ATAC-seq analyses and show iNKT subsets are similar, regardless of tissue location. Lung iNKT cell subsets possess the most distinct location-specific features, shared with other innate lymphocytes in the lung, possibly consistent with increased activation. Following antigenic stimulation, iNKT cells undergo chromatin and transcriptional changes delineating two populations: one similar to follicular helper T cells and the other NK or effector like. Phenotypic analysis indicates these changes are observed long-term, suggesting that iNKT cells gene programs are not fixed, but they are capable of chromatin remodeling after antigen to give rise to additional subsets.


2021 ◽  
Author(s):  
Chen Hu ◽  
Wojciech J. Nawrocki ◽  
Roberta Croce

2020 ◽  
Vol 11 ◽  
Author(s):  
Zhen Yang ◽  
Xue Yang ◽  
Shujia Dong ◽  
Yao Ge ◽  
Xuenan Zhang ◽  
...  

PLoS ONE ◽  
2013 ◽  
Vol 8 (4) ◽  
pp. e61259 ◽  
Author(s):  
Alice Teillet ◽  
Katarzyna Dybal ◽  
Brian R. Kerry ◽  
Anthony J. Miller ◽  
Rosane H. C. Curtis ◽  
...  

2006 ◽  
Vol 27 (3) ◽  
pp. 187-200 ◽  
Author(s):  
Colin Selman ◽  
Nicola D. Kerrison ◽  
Anisha Cooray ◽  
Matthew D. W. Piper ◽  
Steven J. Lingard ◽  
...  

Caloric restriction (CR) increases healthy life span in a range of organisms. The underlying mechanisms are not understood but appear to include changes in gene expression, protein function, and metabolism. Recent studies demonstrate that acute CR alters mortality rates within days in flies. Multitissue transcriptional changes and concomitant metabolic responses to acute CR have not been described. We generated whole genome RNA transcript profiles in liver, skeletal muscle, colon, and hypothalamus and simultaneously measured plasma metabolites using proton nuclear magnetic resonance in mice subjected to acute CR. Liver and muscle showed increased gene expressions associated with fatty acid metabolism and a reduction in those involved in hepatic lipid biosynthesis. Glucogenic amino acids increased in plasma, and gene expression for hepatic gluconeogenesis was enhanced. Increased expression of genes for hormone-mediated signaling and decreased expression of genes involved in protein binding and development occurred in hypothalamus. Cell proliferation genes were decreased and cellular transport genes increased in colon. Acute CR captured many, but not all, hepatic transcriptional changes of long-term CR. Our findings demonstrate a clear transcriptional response across multiple tissues during acute CR, with congruent plasma metabolite changes. Liver and muscle switched gene expression away from energetically expensive biosynthetic processes toward energy conservation and utilization processes, including fatty acid metabolism and gluconeogenesis. Both muscle and colon switched gene expression away from cellular proliferation. Mice undergoing acute CR rapidly adopt many transcriptional and metabolic changes of long-term CR, suggesting that the beneficial effects of CR may require only a short-term reduction in caloric intake.


Forests ◽  
2014 ◽  
Vol 5 (5) ◽  
pp. 1106-1121 ◽  
Author(s):  
Nan Lu ◽  
Bing Wei ◽  
Yuhan Sun ◽  
Xin Liu ◽  
Shouyi Chen ◽  
...  

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