scholarly journals Digitisation of private collections

2020 ◽  
Vol 6 ◽  
Author(s):  
Luc Willemse ◽  
Veljo Runnel ◽  
Hannu Saarenmaa ◽  
Ana Casino ◽  
Karsten Gödderz
Keyword(s):  
Natural History ◽  
Communication Strategy ◽  
Data Management System ◽  
Specific Knowledge ◽  
Management Tools ◽  
Data Infrastructure ◽  
Natural History Collections ◽  
Private Collection ◽  
Collection Data ◽  
Private Collections

Results are presented of a study investigating solutions and procedures to incorporate private natural history collections into the international collections data infrastructure. Results are based on pilot projects carried out in three European countries aimed at approaches on how to best motivate and equip citizen collectors for digitisation: 1) In Estonia, the approach was to outline tools for registering, digitising and publishing private collection data in the biodiversity data management system PlutoF. 2) In Finland, the functionality of FinBIF, a portal offering a popular Notebook Service for citizens to store observations has been expanded to include collection specimens related to a field gathering event. 3) In the Netherlands private collection owners were approached directly and asked to start digitising their collection using dedicated software, either by themselves or with the help of volunteers who were recruited specifically for this task. In addition to management tools, pilots also looked at motivation, persons undertaking the work, scope, planning, specific knowledge or skills required and the platform for online publication. Future ownership, legality of specimens residing in private collections and the use of unique identifiers are underexposed aspects effecting digitisation. Besides streamlining the overall process of digitising private collections and dealing with local, national or international challenges, developing a communication strategy is crucial in order to effectively distribute information and keep private collection owners aware of ongoing developments. Besides collection owners other stakeholders were identified and for each of them a roadmap is outlined aimed at further streamlining the data from private collections into the international infrastructure. In conclusion recommendations are presented based on challenges encountered during this task that are considered important to really make significant progress towards the overall accessibility of data stored in privately held natural history collections.

scholarly journals Future Challenges in Digitisation of Private Natural History Collections

2019 ◽  
Vol 3 ◽  
Author(s):  
Luc Willemse ◽  
Emily van Egmond ◽  
Veljo Runnel ◽  
Hannu Saarenmaa ◽  
Ana Rubio ◽  
...  
Keyword(s):  
Natural History ◽  
Pilot Project ◽  
Communication Strategy ◽  
Sensitive Data ◽  
Natural History Collections ◽  
Raising Awareness ◽  
Private Collection ◽  
Future Challenges ◽  
Collection Data ◽  
Private Collections

Specimens held in private natural history collections form an essential, but often neglected part of the specimens held worldwide in natural history collections. When engaging in regional, national or international initiatives aimed at increasing the accessibility of biodiversity data, it is paramount to include private collections as much and as often as possible. Compared to larger collections in national history institutions, private collections present a unique set of challenges: they are numerous, anonymous, small and diverse in all aspects of collection management. In ICEDIG, a design study for DiSSCo these challenges were tackled in task 2 "Inventory of content and incentives for digitisation of small and private collections" under Workpackage 2 "Inventory of current criteria for prioritization of digitization". First, we need to understand the current state and content of private collections within Europe, to identify and tackle challenges more effectively. While some private collections will duplicate material already held in public collections, many are likely to fill more specialised or unusual niches, relevant to the particular collector(s). At present, there is little evidence about the content of private collections and this needs to be explored. In 2018, a European survey was carried out amongst private collection owners to gain more insight in the volume, scope and degree of digitisation of these collections. Based on this survey, all of the respondents’ collections combined are estimated to contain between 9 and 33 million specimens. This is only the tip of the iceberg for private collections in Europe and underlines the importance of these private collections. Digitisation and sharing collection data are activities that are overall considered important among private collection owners. The survey also showed that for those who have not yet started digitising their collection, the provision of tools and information would be most valuable. These and other highlights of the survey will be presented. In addition, protocols for inventories of private collections will be discussed, as well as ways to keep these up to date. To enhance the inclusion of private collections in Europe’s digitisation efforts, we recognise that we mainly have to focus on the challenges regarding the ‘how’ (work-process), and the sharing of information residing in private collections (including ownership, legal issues, sensitive data). Where necessary, we will also draw attention to the ‘why’ (motivation) of digitisation. A communication strategy aimed at raising awareness about digitisation, offering insight in the practicalities to implement digitisation as well as providing answers to issues related to sharing information, is an essential tool. Elements of a communication strategy to further engage private collection owners will be presented, as will conclusions and recommendations. Finally, digitisation and communication aspects related to private collection owners will need to be tested within the community. Therefore, a pilot project is currently (2018-2019) being carried out in Estonia, Finland and the Netherlands to digitise private collections in a variety of settings. Preliminary results will be presented, zooming in on different approaches to include data from private collections in the overall (research) infrastructures.

scholarly journals SwissCollNet – A National Initiative for Natural History Collections in Switzerland

2019 ◽  
Vol 3 ◽  
Author(s):  
Holger Frick ◽  
Pia Stieger ◽  
Christoph Scheidegger
Keyword(s):  
Natural History ◽  
Data Archiving ◽  
Data Infrastructure ◽  
Botanical Gardens ◽  
Natural History Collections ◽  
Common Strategy ◽  
National Initiative ◽  
Educational Potential ◽  
Term Data

More than 60 million specimens are housed in geological and biological collections in numerous museums and botanical gardens located all over Switzerland. They are of national and international origin. Taken together they form an entity with a high scientific value and international recognition for their contribution to scientific research. Due to the federalistic organisation of Switzerland, natural history collections are located and curated in numerous institutions. So far, no common strategy for digitisation, documentation and long-term data archiving has been developed. This shortcoming has been widely identified by concerned parties. Under the lead of the Swiss Academy of Sciences, several organisations have assembled information about Swiss natural history collections. They identified measures to be taken to promote the scientific and educational potential of natural history collections in Switzerland (Beer et al. 2019). With a national initiative, the Swiss Natural History Collections Network (SwissCollNet) aims to unite Swiss natural history collections under a common vision and with a common strategy. The goal is to promote the collections themselves and to harness the scientific and educational potential of these collections for research and training. SwissCollNet consists of representatives of research, teaching, museums and botanical gardens, the data centers for information on the national fauna and flora, the Swiss Systematics Society and the Swiss node of GBIF, the Global Biodiversity Information Facility. The initiative aims to foster research on natural history collections. It will provide a single decentralised data infrastructure framework for Swiss research related to natural history. It will help to harmonise nationwide collection data management, digitisation and long-term data archiving. It will facilitate identification of specimens and revision of taxonomic groups. New research techniques, fast-evolving computer technologies and internet connectivity, create new opportunities for deciphering and using the wealth of information housed in Swiss and international collections. The development of an agreed strategy and research priorities on a national scale will allow fluent, fluid and permanent collaboration across all Swiss natural history collections by promoting interoperability and unified access to collections as well as creating opportunities for scientific collaboration and innovation. This national approach will create an internationally compatible research data infrastructure, while respecting and integrating regional and decentralized conditions and requirements. Thus, it will maximize the impact for science, policy and society.

THE CATALOG OF THE MINERALOGICAL COLLECTION OF THE EMPEROR LEOPOLD II (1747–1792): COLLECTING AND LEARNING IN EIGHTEENTH-CENTURY EUROPE

2019 ◽  
Vol 38 (2) ◽  
pp. 173-203 ◽  
Author(s):  
ANNARITA FRANZA ◽  
ROSANNA FABOZZI ◽  
LETIZIA VEZZOSI ◽  
LUCIANA FANTONI ◽  
GIOVANNI PRATESI
Keyword(s):  
Eighteenth Century ◽  
Economic Evaluation ◽  
Natural History ◽  
Metal Content ◽  
Natural History Museum ◽  
History Museum ◽  
Historical Archive ◽  
Natural History Collections ◽  
Private Collection ◽  
The University

ABSTRACT The Collectio Mineralium (1765) currently preserved at the Historical Archive of the Natural History Museum of the University of Firenze, is the unpublished catalog of the mineralogical collection that belonged to Emperor Leopold II (1747–1792). The catalog is a 110-page register, with the golden emblem of the House of Habsburg at the center of the binding, containing information about 242 mineralogical samples. Each specimen is carefully described (i.e., habit, metal content, product value) and its locality given. The interpretation of the text has also returned information on most of the mining deposits in the Austro-Hungarian territories in the eighteenth century. Therefore, the interpretation of this catalog—that on the basis of the literature appears to be the first catalog of a collection belonged to a Habsburg emperor—represents an important step toward enhancing our understanding of Habsburg natural history collections and reflected the transition from wonder-rooms to commodity collecting. Leopold's private collection was no longer an ‘instrument of wonder’ but it became representative of scientific collecting characterized by the establishment of systematic mineralogy, and by a careful economic evaluation of the mineralogical samples collected as a symbol of the power of the Austro-Hungarian Empire.

scholarly journals Symbiota2: Enabling greater collaboration and flexibility in mobilizing biodiversity data

2019 ◽  
Vol 3 ◽  
Author(s):  
Mary Barkworth ◽  
Benjamin Brandt ◽  
Curtis Dyreson ◽  
Neil Cobb ◽  
Will Pearse
Keyword(s):  
Natural History ◽  
Web Services ◽  
Management System ◽  
The United States ◽  
Content Management ◽  
Database Management System ◽  
Data Management System ◽  
Natural History Collections ◽  
A Site ◽  
Site Managers

Symbiota, the most used biodiversity content management system in the United States, has helped mobilize over 35 million specimen records from over 750 natural history collections via 40+ separate installations. Most Symbiota records come from natural history collections but some Symbiota instances also incorporate records from observations, images, publications, and gardens. Symbiota serves as both a data management system for entering, annotating, and cleaning occurrence data, images and associated specimen data (e.g., genetic sequences, images, publications) and as a primary aggregator/publisher for data stored in any database system that can export to a comma separated value (csv) file. Symbiota integrates and displays data and images from many resources in multiple formats, some of which appeal primarily to researchers, others to land managers, educators, and the general public. After nearly 20 years, Symbiota is going through a major software revision through Symbiota2, a US National Science Foundation-funded project. The broad goals of Symbiota2 are to make it easier for developers to add new functionality, to improve usability, and to help site managers administer a site. Symbiota2 will have a plugin-based architecture that will allow developers to encapsulate functionality in a plugin. Symbiota2 will improve usability by supporting off-line use, enabling Wordpress (content-managment system) integration, and having a customizable user interface. Symbiota2 will help site managers by simplifying installation and management of a site. The three-year project is on-going, but so far we have created a Symbiota2 GithHub repository and a Docker image with all the necessary components for installing, configuring, and running Symbiota2, an object relational mapping (ORM) of the tables in the database management system (DBMS), and web services to connect to the DBMS via the ORM. We used Doctrine 2 for the ORM and API-Platform for the web services. By the third quarter of 2019, we anticipate deploying the plugin framework to encourage developers to create new functionality for biodiversity content management.

scholarly journals DaRWIN: An open source natural history collections data management system

2019 ◽  
Vol 3 ◽  
Author(s):  
Marielle Adam ◽  
Franck Theeten ◽  
Jean-Marc Herpers ◽  
Thomas Vandenberghe ◽  
Patrick Semal ◽  
...  
Keyword(s):  
Natural History ◽  
Open Source ◽  
Management System ◽  
Data Management System ◽  
Sensitive Information ◽  
Type Specimens ◽  
Natural History Collections ◽  
Access Rights ◽  
Different Levels ◽  
New Framework

DaRWIN (Data Research Warehouse Information Network) is an in-house solution developed by the Royal Belgian Institute of Natural Sciences (RBINS), as a Natural History collections management system for biological and geological samples in collections. In 2014, the Royal Museum for Central Africa (RMCA) adopted this system for its collections and started to take part in new developments. The DaRWIN database currently manages information on more than 600,000 records (about 4 million specimens) housed at the RBINS and more than 650,000 records (more than 1 million specimens) at the RMCA. DaRWIN is an open source system, consisting of a PostgreSQL database and a customizable web-interface based on the Symfony framework (https://symfony.com). DaRWIN is divided into 2 parts: one public section that gives a “read-only” access to digitised specimens, one section for registered users, with different levels of access rights (user, encoder, conservator and administrator), customizable for each collection and allowing update of specimens and collections, daily management of collections, and the potential for dealing with sensitive information. one public section that gives a “read-only” access to digitised specimens, one section for registered users, with different levels of access rights (user, encoder, conservator and administrator), customizable for each collection and allowing update of specimens and collections, daily management of collections, and the potential for dealing with sensitive information. DaRWIN stores sample data and related information such as place and date of collection, missions and collectors, identifiers, technicians involved, taxonomy, identification information (type, stage, state, etc.), bibliography, related files, storage, etc. Other features that deal with day-to-day curation operations are available: loans, printing of labels for storage, statistics and reporting. DaRWIN features its own JSON (JavaScript Object Notation) webservice for specimens and scientific names and can export data in tab-delimited, Excel, PDF and GeoJSON formats. More recently, a procedure for importing batches of data has been developed, based on tab-delimited files, making integration of data from (old/historical) databases faster and more controlled. Additional improvements of the user interface and database model have been made. For example, parallel taxonomical hierarchies can be created, allowing users to work with temporary taxonomies, old scientific names (basionyms and synonyms) and document the history of type specimens. Finally, quality control and data cleaning on several tables have been implemented, e.g. mapping of locality names with vocabularies like Geonames, adding ISO 3166 two-letter country codes (https://www.iso.org/iso-3166-country-codes.html), cleaning duplicates from people/institutions and taxonomy catalogues. A tool for checking taxonomical names on GBIF (Global Biodiversity Information Facility), WoRMS (World Register of Marine Species) and DaRWIN itself, based on webservices and tab-delimited files, has been developed. Last year, RBINS, RMCA and Meise Botanic Garden (MBG) defined a new framework of collaboration in the NaturalHeritage project (http://www.naturalheritage.be), in order to foster interoperability among their collection data sources. This new framework presents itself as one common research portal for data on natural history collections (from DaRWIN and other existing collection databases) of the three partnered institutions and makes data compliant to a standard agreed by the partners. See Poster "NaturalHeritage: Bridging Belgian Natural History Collections" for more information. DaRWIN is accessible online (http://darwin.naturalsciences.be). A Github repository is also available (https://github.com/naturalsciences/natural_heritage_darwin).

scholarly journals First report of the rare arboreal grasshopper Bactrophora dominans Westwood, 1842 (Insecta, Orthoptera, Caelifera, Romaleidae) from Brazil

Check List ◽  
2021 ◽  
Vol 17 (3) ◽  
pp. 895-903
Author(s):  
Daniela Santos Martins Silva ◽  
Gustavo Costa Tavares ◽  
Marcos Fianco ◽  
Jorge M. Gonzalez
Keyword(s):  
Natural History ◽  
South America ◽  
Central America ◽  
New Records ◽  
Web Based ◽  
First Report ◽  
Natural History Collections ◽  
Collection Data ◽  
Northern South America ◽  
Amazonian Region

The genus Bactrophora Westwood, 1842 comprises only two species known from Central America and northern South America, with a notable scarcity of collected specimens. Herein, we provide the first records of the presence of this genus in Brazil. These new records, based on entomological collection data and photographic records, extend the known distribution of Bactrophora dominans Westwood, 1842 to include the Brazilian Amazonian region. Both records emphasize the importance of natural history collections and the significance of the iNaturalist web-based application as an instrumental tool in this discovery.

scholarly journals Visualizing natural history collection data provides insight into collection development and bias

2018 ◽  
Vol 6 ◽  
Author(s):  
Vaughn Shirey
Keyword(s):  
Natural History ◽  
Large Body ◽  
Aggregated Data ◽  
Natural History Collections ◽  
Natural History Collection ◽  
Drexel University ◽  
Collection Data ◽  
Spatial Domains ◽  
Life On Earth ◽  
Insight Into

Natural history collections contain estimated billions of records representing a large body of knowledge about the diversity and distribution of life on Earth. Assessments of various forms of bias within the aggregated data associated with specimens in these collections have been conducted across temporal, taxonomic, and spatial domains. Considering that these biases are the sum of biases across all contributing collections to aggregate datasets, the assessment of bias at the collection level is warranted. Interactive visualization provides a powerful tool for the assessment of these biases and insight into the historical development of natural history collections, providing context for where sources of bias may originate and developing historical narratives to clarify our understanding of our own knowledge about life on Earth. Here, I present a case study on using Sankey diagrams to illustrate the development of the entomology type collection at the Academy of Natural Sciences of Drexel University in Philadelphia, Pennsylvania with the hope that extensions of these practices among individual natural history collections are modified and adopted.

Joseph Sidebotham: vicissitudes of a Victorian collector

2015 ◽  
Vol 42 (2) ◽  
pp. 197-210 ◽  
Author(s):  
Laurence M. Cook
Keyword(s):  
Natural History ◽  
Species Limits ◽  
Clear Cut ◽  
Natural History Collections ◽  
As Species ◽  
Scientific World

Joseph Sidebotham (1824–1885) was a Manchester cotton baron whose natural history collections are now in the Manchester Museum. In addition to collecting he suggested a method for identifying and classifying Lepidoptera and investigated variation within species as well as species limits. With three close collaborators, he is credited with discovering many species new to Britain in both Lepidoptera and Coleoptera. A suspicion of fraud attaches to these claims. The evidence is not clear-cut in the Lepidoptera, but a possible reason is suggested why Sidebotham, as an amateur in the increasingly professional scientific world, might have engaged in deceit.

Restoration of two great auk (Pinguinus impennis) eggs: Bourman Labrey's egg and the Scarborough egg

2020 ◽  
Vol 47 (2) ◽  
pp. 392-401
Author(s):  
T. R. Birkhead ◽  
G. Axon ◽  
J. R. Middleton
Keyword(s):  
Black Light ◽  
Private Collection ◽  
Different Types ◽  
The Media ◽  
Media Reports ◽  
Public Museums ◽  
Private Collections ◽  
Time Of Collection ◽  
Extensive Damage

Most of the approximately 75 known eggs of the extinct great auk ( Pinguinus impennis) are in public museums, with a few in private collections. A small number of these eggs has sustained damage, either at the time of collection or subsequently, and two of these eggs are known to have been repaired. The two eggs suffered rather different types of damage and were subsequently restored using different techniques. The first, known as Bourman Labrey's egg, sustained extensive damage sometime prior to the 1840s, when the shell was broken into numerous pieces. This egg was repaired by William Yarrell in the 1840s, and when it was restored again in 2018, it was discovered that Yarrell's restoration had involved the use of an elaborate cardboard armature. This egg is currently in a private collection. The second egg, known as the Scarborough egg, bequeathed to the Scarborough Museum in 1877, was damaged (by unknown causes) and repaired, probably by the then curator at Scarborough, W. J. Clarke, in 1906. This egg was damaged when one or more pieces were broken adjacent to the blowhole at the narrow end (where there was some pre-existing damage). The media reports at the time exaggerated the extent of the damage, suggesting that the egg was broken almost in two. Possible reasons for this exaggeration are discussed. Recent examination using a black light and ultraviolet (UV) revealed that the eggshell had once borne the words, “a Penguin's Egg”, that were subsequently removed by scraping.

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