Development of a Classification Model for CD4 Count of HIV Patients Using Supervised Machine Learning Algorithms

Author(s):  
Peter Adebayo Idowu ◽  
Jeremiah Ademola Balogun

This chapter was developed with a view to present a predictive model for the classification of the level of CD4 count of HIV patients receiving ART/HAART treatment in Nigeria. Following the review of literature, the pre-determining factors for determining CD4 count were identified and validated by experts while historical data explaining the relationship between the factors and CD4 count level was collected. The predictive model for CD4 count level was formulated using C4.5 decision trees (DT), support vector machines (SVM), and the multi-layer perceptron (MLP) classifiers based on the identified factors which were formulated using WEKA software and validated. The results showed that decision trees algorithm revealed five (5) important variables, namely age group, white blood cell count, viral load, time of diagnosing HIV, and age of the patient. The MLP had the best performance with a value of 100% followed by the SVM with an accuracy of 91.1%, and both were observed to outperform the DT algorithm used.

2019 ◽  
Vol 8 (4) ◽  
pp. 160 ◽  
Author(s):  
Bingxin Liu ◽  
Ying Li ◽  
Guannan Li ◽  
Anling Liu

Spectral characteristics play an important role in the classification of oil film, but the presence of too many bands can lead to information redundancy and reduced classification accuracy. In this study, a classification model that combines spectral indices-based band selection (SIs) and one-dimensional convolutional neural networks was proposed to realize automatic oil films classification using hyperspectral remote sensing images. Additionally, for comparison, the minimum Redundancy Maximum Relevance (mRMR) was tested for reducing the number of bands. The support vector machine (SVM), random forest (RF), and Hu’s convolutional neural networks (CNN) were trained and tested. The results show that the accuracy of classifications through the one dimensional convolutional neural network (1D CNN) models surpassed the accuracy of other machine learning algorithms such as SVM and RF. The model of SIs+1D CNN could produce a relatively higher accuracy oil film distribution map within less time than other models.


Author(s):  
Inssaf El Guabassi ◽  
Zakaria Bousalem ◽  
Rim Marah ◽  
Aimad Qazdar

In recent years, the world's population is increasingly demanding to predict the future with certainty, predicting the right information in any area is becoming a necessity. One of the ways to predict the future with certainty is to determine the possible future. In this sense, machine learning is a way to analyze huge datasets to make strong predictions or decisions. The main objective of this research work is to build a predictive model for evaluating students’ performance. Hence, the contributions are threefold. The first is to apply several supervised machine learning algorithms (i.e. ANCOVA, Logistic Regression, Support Vector Regression, Log-linear Regression, Decision Tree Regression, Random Forest Regression, and Partial Least Squares Regression) on our education dataset. The second purpose is to compare and evaluate algorithms used to create a predictive model based on various evaluation metrics. The last purpose is to determine the most important factors that influence the success or failure of the students. The experimental results showed that the Log-linear Regression provides a better prediction as well as the behavioral factors that influence students’ performance.


2017 ◽  
Vol 4 (1) ◽  
pp. 56-74 ◽  
Author(s):  
Abinash Tripathy ◽  
Santanu Kumar Rath

Sentiment analysis helps to determine hidden intention of the concerned author of any topic and provides an evaluation report on the polarity of any document. The polarity may be positive, negative or neutral. It is observed that very often the data associated with the sentiment analysis consist of the feedback given by various specialists on any topic or product. Thus, the review may be categorized properly into any sort of class based on the polarity, in order to have a good knowledge about the product. This article proposes an approach to classify the review dataset made on basis of sentiment analysis into different polarity groups. Four machine learning algorithms viz., Naive Bayes (NB), Support Vector Machine (SVM), Random Forest, and Linear Discriminant Analysis (LDA) have been considered in this paper for classification process. The obtained result on values of accuracy of the algorithms are critically examined by using different performance parameters, applied on two different datasets.


2019 ◽  
Vol 143 (8) ◽  
pp. 990-998 ◽  
Author(s):  
Min Yu ◽  
Lindsay A. L. Bazydlo ◽  
David E. Bruns ◽  
James H. Harrison

Context.— Turnaround time and productivity of clinical mass spectrometric (MS) testing are hampered by time-consuming manual review of the analytical quality of MS data before release of patient results. Objective.— To determine whether a classification model created by using standard machine learning algorithms can verify analytically acceptable MS results and thereby reduce manual review requirements. Design.— We obtained retrospective data from gas chromatography–MS analyses of 11-nor-9-carboxy-delta-9-tetrahydrocannabinol (THC-COOH) in 1267 urine samples. The data for each sample had been labeled previously as either analytically unacceptable or acceptable by manual review. The dataset was randomly split into training and test sets (848 and 419 samples, respectively), maintaining equal proportions of acceptable (90%) and unacceptable (10%) results in each set. We used stratified 10-fold cross-validation in assessing the abilities of 6 supervised machine learning algorithms to distinguish unacceptable from acceptable assay results in the training dataset. The classifier with the highest recall was used to build a final model, and its performance was evaluated against the test dataset. Results.— In comparison testing of the 6 classifiers, a model based on the Support Vector Machines algorithm yielded the highest recall and acceptable precision. After optimization, this model correctly identified all unacceptable results in the test dataset (100% recall) with a precision of 81%. Conclusions.— Automated data review identified all analytically unacceptable assays in the test dataset, while reducing the manual review requirement by about 87%. This automation strategy can focus manual review only on assays likely to be problematic, allowing improved throughput and turnaround time without reducing quality.


Sensors ◽  
2021 ◽  
Vol 21 (11) ◽  
pp. 3923
Author(s):  
Yixu Huang ◽  
Iyll-Joon Doh ◽  
Euiwon Bae

Volatile organic compounds (VOCs) are chemicals emitted by various groups, such as foods, bacteria, and plants. While there are specific pathways and biological features significantly related to such VOCs, detection of these is achieved mostly by human odor testing or high-end methods such as gas chromatography–mass spectrometry that can analyze the gaseous component. However, odor characterization can be quite helpful in the rapid classification of some samples in sufficient concentrations. Lower-cost metal-oxide gas sensors have the potential to allow the same type of detection with less training required. Here, we report a portable, battery-powered electronic nose system that utilizes multiple metal-oxide gas sensors and machine learning algorithms to detect and classify VOCs. An in-house circuit was designed with ten metal-oxide sensors and voltage dividers; an STM32 microcontroller was used for data acquisition with 12-bit analog-to-digital conversion. For classification of target samples, a supervised machine learning algorithm such as support vector machine (SVM) was applied to classify the VOCs based on the measurement results. The coefficient of variation (standard deviation divided by mean) of 8 of the 10 sensors stayed below 10%, indicating the excellent repeatability of these sensors. As a proof of concept, four different types of wine samples and three different oil samples were classified, and the training model reported 100% and 98% accuracy based on the confusion matrix analysis, respectively. When the trained model was challenged against new sets of data, sensitivity and specificity of 98.5% and 98.6% were achieved for the wine test and 96.3% and 93.3% for the oil test, respectively, when the SVM classifier was used. These results suggest that the metal-oxide sensors are suitable for usage in food authentication applications.


2020 ◽  
pp. 143-163
Author(s):  
Abinash Tripathy ◽  
Santanu Kumar Rath

Sentiment analysis helps to determine hidden intention of the concerned author of any topic and provides an evaluation report on the polarity of any document. The polarity may be positive, negative or neutral. It is observed that very often the data associated with the sentiment analysis consist of the feedback given by various specialists on any topic or product. Thus, the review may be categorized properly into any sort of class based on the polarity, in order to have a good knowledge about the product. This article proposes an approach to classify the review dataset made on basis of sentiment analysis into different polarity groups. Four machine learning algorithms viz., Naive Bayes (NB), Support Vector Machine (SVM), Random Forest, and Linear Discriminant Analysis (LDA) have been considered in this paper for classification process. The obtained result on values of accuracy of the algorithms are critically examined by using different performance parameters, applied on two different datasets.


The first step in diagnosis of a breast cancer is the identification of the disease. Early detection of the breast cancer is significant to reduce the mortality rate due to breast cancer. Machine learning algorithms can be used in identification of the breast cancer. The supervised machine learning algorithms such as Support Vector Machine (SVM) and the Decision Tree are widely used in classification problems, such as the identification of breast cancer. In this study, a machine learning model is proposed by employing learning algorithms namely, the support vector machine and decision tree. The kaggle data repository consisting of 569 observations of malignant and benign observations is used to develop the proposed model. Finally, the model is evaluated using accuracy, confusion matrix precision and recall as metrics for evaluation of performance on the test set. The analysis result showed that, the support vector machine (SVM) has better accuracy and less number of misclassification rate and better precision than the decision tree algorithm. The average accuracy of the support vector machine (SVM) is 91.92 % and that of the decision tree classification model is 87.12 %.


Sentiment analysis is deals with the classification of sentiments expressed in a particular document. The analysis of user generated data by using sentiment analysis is very useful for knowing the opinion of a crowd. This paper is mainly aimed to tackle the problem of polarity categorization of sentiment analysis. A Detailed description of the sentiment analysis process is also given. Product review data set from UCI repository is used for analysis. This paper is giving a comparative analysis of four supervised machine learning algorithms namely Naive Bayes, Support Vector Machine, Decision Tree and Random Forest which are used for product review analysis. The result shows that, Random Forest classification algorithm provides better accuracy than other three algorithms


2020 ◽  
Vol 23 (4) ◽  
pp. 274-284 ◽  
Author(s):  
Jingang Che ◽  
Lei Chen ◽  
Zi-Han Guo ◽  
Shuaiqun Wang ◽  
Aorigele

Background: Identification of drug-target interaction is essential in drug discovery. It is beneficial to predict unexpected therapeutic or adverse side effects of drugs. To date, several computational methods have been proposed to predict drug-target interactions because they are prompt and low-cost compared with traditional wet experiments. Methods: In this study, we investigated this problem in a different way. According to KEGG, drugs were classified into several groups based on their target proteins. A multi-label classification model was presented to assign drugs into correct target groups. To make full use of the known drug properties, five networks were constructed, each of which represented drug associations in one property. A powerful network embedding method, Mashup, was adopted to extract drug features from above-mentioned networks, based on which several machine learning algorithms, including RAndom k-labELsets (RAKEL) algorithm, Label Powerset (LP) algorithm and Support Vector Machine (SVM), were used to build the classification model. Results and Conclusion: Tenfold cross-validation yielded the accuracy of 0.839, exact match of 0.816 and hamming loss of 0.037, indicating good performance of the model. The contribution of each network was also analyzed. Furthermore, the network model with multiple networks was found to be superior to the one with a single network and classic model, indicating the superiority of the proposed model.


2021 ◽  
Vol 13 (9) ◽  
pp. 4728
Author(s):  
Zinhle Mashaba-Munghemezulu ◽  
George Johannes Chirima ◽  
Cilence Munghemezulu

Rural communities rely on smallholder maize farms for subsistence agriculture, the main driver of local economic activity and food security. However, their planted area estimates are unknown in most developing countries. This study explores the use of Sentinel-1 and Sentinel-2 data to map smallholder maize farms. The random forest (RF), support vector (SVM) machine learning algorithms and model stacking (ST) were applied. Results show that the classification of combined Sentinel-1 and Sentinel-2 data improved the RF, SVM and ST algorithms by 24.2%, 8.7%, and 9.1%, respectively, compared to the classification of Sentinel-1 data individually. Similarities in the estimated areas (7001.35 ± 1.2 ha for RF, 7926.03 ± 0.7 ha for SVM and 7099.59 ± 0.8 ha for ST) show that machine learning can estimate smallholder maize areas with high accuracies. The study concludes that the single-date Sentinel-1 data were insufficient to map smallholder maize farms. However, single-date Sentinel-1 combined with Sentinel-2 data were sufficient in mapping smallholder farms. These results can be used to support the generation and validation of national crop statistics, thus contributing to food security.


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