scholarly journals The shortcut strategy for beta thalassemia prevention

2018 ◽  
Vol 10 (2) ◽  
Author(s):  
Narutchala Suwannakhon ◽  
Khajohnsilp Pongsawatkul ◽  
Teerapat Seeratanachot ◽  
Khwanruedee Mahingsa ◽  
Arunee Pingyod ◽  
...  

We propose antenatal blood tests using high-resolution DNA melting (HRM) analysis for beta thalassemia mutation detection after hemoglobin A2 estimation as a modified strategy for the identification of beta thalassemia at-risk couples. Antenatal blood samples of 1,115 couples were transferred from the antenatal care clinic. Hemoglobin A2 was quantified, and proportions ≥3.5% were further assessed for beta thalassemia mutation using HRM analysis. Twelve types of beta thalassemia mutations, including hemoglobin E, were identified. There were 23 couples who were detected as at-risk. All at-risk couples were identified within 7 working days after sample receipt. Prenatal diagnosis revealed 6 affected fetuses. One fetus was homozygous CD17 (AT), and five fetuses exhibited beta0 – thalassemia/ hemoglobin E disease. These results were consistent with the outcomes calculated using the Hardy-Weinberg equation. Antenatal blood tests for mutation detection using high-resolution DNA melting analysis after hemoglobin A2 estimation is a feasible laboratory method for the recruitment of couples with a fetus that is at risk for beta thalassemia. This modified strategy is cost-effective and may be beneficial for use in a beta thalassemia prevention program.

Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 3832-3832
Author(s):  
Monica V. Gallivan ◽  
Laura A. Worfolk ◽  
Christina D. Lapuz ◽  
Olivia Saqui ◽  
Larielyn P. Pan ◽  
...  

Abstract With the advent of high performance liquid chromatography (HPLC) accurate and precise measurement of hemoglobin A2 has been available for over 20 years. When microcytosis is present an elevated A2 is used as a surrogate marker for identification of beta thalassemia carriers. This combination is a very useful screening test. In contrast, A2 measurement in the low range is used to a lesser extent in screening for alpha thalassemia, delta chain variants and delta thalassemia. In the absence of structural variants A2 measurement by HPLC is accurate in the normal, high, and low ranges. This accuracy however does not hold true when samples harbor structural variants, particularly in the presence of Hb S as there are glycated and degraded fractions of S that co-elute with A2, thus falsely elevating the A2 value. In addition, with E and “D” type variants there is no A2 result or a falsely decreased value because A2 partially or completely co-elutes with the variant. In contrast to HPLC, capillary zone electrophoresis (CZE) separates the hemoglobin fractions according to their electrophoretic mobility with an alkaline buffer. We compared HbA2 measurement by high resolution (HR) HPLC (Primus Diagnostics) and CZE (Sebia CapillaryS) in samples without structural variants in the normal, high, and low ranges and in samples containing common structural variants. The 112 normals were from healthy, hematologically normal adult volunteers. The 20 samples in the high A2 range did not include structural variants and all had microcytosis. The 42 low A2 samples were from individuals without microcytosis in whom isoelectricfocusing (IEF) was also performed to identify delta chain variants. The heterozygotes for S, C, E and “D” had adult phenotypes and based on the percentages of the variant did not appear to have alpha thalassemia. In the “D” group there were 6 D-Punjab, 1 Osu-Christiansburg, and 1 Korle-Bu. G-Philadelphia was excluded as it occurs in association with alpha thalassemia. The results of our comparison study are shown in Table I. Besides what is indicated in the table we identified 9 individuals in the low A2 group that had delta chain variants identified on CZE but silent on HR-HPLC. These delta variants were confirmed by IEF. In summary, in the absence of structural variants these data indicate excellent correlation between HR-HPLC and CZE in the normal, high and low A2 ranges. In the low A2 range CZE has an added advantage over HR-HPLC in detecting delta variants. In the C-Trait group both methodologies appear equivalent but as expected in the S-Trait, E-Trait, and “D” Trait groups the CZE value appears to be more accurate. Compared to the normal group, however, there is a slight positive bias in S-Trait and E-Trait. In conclusion both methodologies appear complementary and can be used in combination for greater accuracy in hemoglobin identification and quantification of fractions. Table I Parameter N HR-HPLC Mean HR-HPLC 1 SD CZE Mean CZE 1 SD y R value Normal range A2 (1.8–3.5) 112 2.6 0.17 2.6 0.15 1.02 0.90 High range A2 > 3.6 20 5.1 0.59 5.0 0.5 0.98 0.94 Low range A <1.8 42 1.4 0.25 1.5 0.29 1.08 0.91 S Trait 32 4.0 0.25 3.1 0.18 0.76 0.66 C trait 15 3.1 0.28 3.1 0.3 0.98 0.66 E Trait 12 2.0 0.55 3.4 0.41 1.52 0.38 “D” Trait 8 N/A N/A 2.9 0.18 N/A N/A


PLoS ONE ◽  
2019 ◽  
Vol 14 (11) ◽  
pp. e0225457 ◽  
Author(s):  
Chonthicha Satirapod ◽  
Matchuporn Sukprasert ◽  
Bhakbhoom Panthan ◽  
Angkana Charoenyingwattana ◽  
Pawares Chitayanan ◽  
...  

PLoS ONE ◽  
2011 ◽  
Vol 6 (1) ◽  
pp. e14522 ◽  
Author(s):  
Jesus Gonzalez-Bosquet ◽  
Jacob Calcei ◽  
Jun S. Wei ◽  
Montserrat Garcia-Closas ◽  
Mark E. Sherman ◽  
...  

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Chayapol Tungphatthong ◽  
Santhosh Kumar J. Urumarudappa ◽  
Supita Awachai ◽  
Thongchai Sooksawate ◽  
Suchada Sukrong

AbstractMitragyna speciosa (Korth.) Havil. [MS], or “kratom” in Thai, is the only narcotic species among the four species of Mitragyna in Thailand, which also include Mitragyna diversifolia (Wall. ex G. Don) Havil. [MD], Mitragyna hirsuta Havil. [MH], and Mitragyna rotundifolia (Roxb.) O. Kuntze [MR]. M. speciosa is a tropical tree belonging to the Rubiaceae family and has been prohibited by law in Thailand. However, it has been extensively covered in national and international news, as its abuse has become more popular. M. speciosa is a narcotic plant and has been used as an opium substitute and traditionally used for the treatment of chronic pain and various illnesses. Due to morphological disparities in the genus, the identification of plants in various forms, including fresh leaves, dried leaf powder, and finished products, is difficult. In this study, DNA barcoding combined with high-resolution melting (Bar-HRM) analysis was performed to differentiate M. speciosa from allied Mitragyna and to assess the capability of Bar-HRM assays to identify M. speciosa in suspected kratom or M. speciosa-containing samples. Bar-HRM analysis of PCR amplicons was based on the ITS2, rbcL, trnH-psbA, and matK DNA barcode regions. The melting profiles of ITS2 amplicons were clearly distinct, which enabled the authentication and differentiation of Mitragyna species from allied species. This study reveals that DNA barcoding coupled with HRM is an efficient tool with which to identify M. speciosa and M. speciosa-containing samples and ensure the safety and quality of traditional Thai herbal medicines.


Genes ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 199
Author(s):  
Xiaochun Zhang ◽  
Huan Yu ◽  
Qi Yang ◽  
Ziwei Wang ◽  
Ruocheng Xia ◽  
...  

In recent years, trafficking and abuse of hallucinogenic mushrooms have become a serious social problem. It is therefore imperative to identify hallucinogenic mushrooms of the genus Psilocybe for national drug control legislation. An internal transcribed spacer (ITS) is a DNA barcoding tool utilized for species identification. Many methods have been used to discriminate the ITS region, but they are often limited by having a low resolution. In this study, we sought to analyze the ITS and its fragments, ITS1 and ITS2, by using high-resolution melting (HRM) analysis, which is a rapid and sensitive method for evaluating sequence variation within PCR amplicons. The ITS HRM assay was tested for specificity, reproducibility, sensitivity, and the capacity to analyze mixture samples. It was shown that the melting temperatures of the ITS, ITS1, and ITS2 of Psilocybe cubensis were 83.72 ± 0.01, 80.98 ± 0.06, and 83.46 ± 0.08 °C, and for other species, we also obtained species-specific results. Finally, we performed ITS sequencing to validate the presumptive taxonomic identity of our samples, and the sequencing output significantly supported our HRM data. Taken together, these results indicate that the HRM method can quickly distinguish the DNA barcoding of Psilocybe cubensis and other fungi, which can be utilized for drug trafficking cases and forensic science.


2010 ◽  
pp. n/a-n/a
Author(s):  
Supatra Sirichotiyakul ◽  
Chanane Wanapirak ◽  
Rattika Saetung ◽  
Torpong Sanguansermsri

2007 ◽  
Vol 2 (1) ◽  
pp. 59-66 ◽  
Author(s):  
Jesse Montgomery ◽  
Carl T Wittwer ◽  
Robert Palais ◽  
Luming Zhou

2013 ◽  
Vol 32 (2) ◽  
pp. 152-157
Author(s):  
Nora Fawzi ◽  
Ramachandran Vasudevan ◽  
Patimah Ismail ◽  
Mazeni Alwi ◽  
Ahmad Fazli Abdul Aziz ◽  
...  

Summary Background: Congenital heart disease (CHD) is the most common birth defect; however, the underlying etiology is unrecognized in the majority of cases. GATA-binding protein 4 (GATA4), a cardiac transcription factor gene, has a crucial role in the cardiogenesis process; hence, a number of heterozygote sequence variations were identified as a cause of CHD. G296S heterozygote variant is the most frequently reported GATA4 gene sequence alteration. This study aims to investigate the role of G296S variant of the GATA4 gene in Malaysian CHD subjects. Methods: We have investigated 86 Malaysian CHD subjects with cardiac septation defects for the presence of the GATA4 gene heterozygote variant (G296S) by the new technology of high resolution melting (HRM) analysis. Results: Genotyping of G296S (c.886G>A) by HRM analysis shows that all the sample genotypes were of the wild GG type genotype and the heterozygote mutant GA genotype was totally absent from this study cohort. Conclusions: The results of our study showed that the G296S variant of the GATA4 gene was not associated with the development of CHD in Malaysian subjects. The use of HRM analysis proved a cost-effective, high-throughput, specific and sensitive genotyping technique which eliminates the need for unnecessary sequencing.


PEDIATRICS ◽  
1959 ◽  
Vol 24 (1) ◽  
pp. 43-49
Author(s):  
Soodsarkorn Tuchinda ◽  
Chitra Vareenil ◽  
Partraporn Bhanchit ◽  
Virginia Minnich

Four hundred and fifteen specimens of cord blood collected from the Thai population were examined; 22 contained an electrophoretically "fast"-moving component of hemoglobin, an incidence of 5.2%. No other abnormal hemoglobin was found in the specimens of cord blood. Eleven of the babies with abnormal hemoglobin were examined; hematologic findings were within normal limits. Five were followed for 2½ to 8 months; the abnormal component disappeared within 76 to 101 days. One of these children subsequently developed hemoglobin E. Another baby, 2 days of age when first seen, had the "fast" component of hemoglobin in the blood. She was the only child in the group who had marked hepatomegaly, splenomegaly, reticulocytosis, and nucleated erythrocytes in the peripheral blood. These abnormalities subsequently disappeared, but at 112 days a small amount of the "fast" component of hemoglobin persisted and hemoglobin E had appeared. The blood of 412 mothers revealed an incident of 10% hemoglobin E, the only abnormal hemoglobin detected by paper electrophoresis. The concentration of hemoglobin A2 was determined on the blood drawn from nine parents of babies with abnormal "fast" hemoglobin; the value was normal in all instances. Microcytosis and increased resistance of the erythrocytes in hypotonic saline solution, however, was found frequently among the parents of affected babies. The abnormal "fast" component of hemoglobin was identical with "Barts" hemoglobin. Its characteristics suggest that it may be an abnormal fetal hemoglobin.


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