Supplementary material to "Insights into nitrogen fixation below the euphotic zone: trials in an oligotrophic marginal sea and global compilation"

Author(s):  
Siqi Wu ◽  
Moge Du ◽  
Xianhui Sean Wan ◽  
Corday Selden ◽  
Mar Benavides ◽  
...  
2015 ◽  
Vol 12 (1) ◽  
pp. 865-889
Author(s):  
T. Shiozaki ◽  
T. Nagata ◽  
M. Ijichi ◽  
K. Furuya

Abstract. Nitrogen fixation in temperate oceans is a potentially important, but poorly understood process that may influence the marine nitrogen budget. This study determined seasonal variations in nitrogen fixation and nifH gene diversity within the euphotic zone in the temperate coastal region of the northwestern North Pacific. Nitrogen fixation as high as 13.6 nmolN L−1 d−1 was measured from early summer to fall when the surface temperature exceeded 14.2 °C and the surface nitrate concentration was low (≤ 0.30 μM), although we also detected nitrogen fixation in subsurface layers (42–62 m) where nitrate concentrations were high (> 1 μM). During periods with high nitrogen fixation, the nifH sequences of UCYN-A were recovered, suggesting that these groups played a key role in nitrogen fixation. The nifH genes were also recovered in spring and winter when nitrogen fixation was undetectable. These genes consisted of many sequences affiliated with Cluster III diazotrophs (putative anaerobic bacteria), which hitherto have rarely been reported to be abundant in surface diazotroph communities in marine environments.


2020 ◽  
Author(s):  
Benedikt Ehrenfels ◽  
Maciej Bartosiewicz ◽  
Athanasio S. Mbonde ◽  
Kathrin B. L. Baumann ◽  
Christian Dinkel ◽  
...  

2015 ◽  
Vol 12 (15) ◽  
pp. 4751-4764 ◽  
Author(s):  
T. Shiozaki ◽  
T. Nagata ◽  
M. Ijichi ◽  
K. Furuya

Abstract. Nitrogen fixation in temperate oceans is a potentially important, but poorly understood process that may influence the marine nitrogen budget. This study determined seasonal variations in nitrogen fixation and the diazotroph community within the euphotic zone in the temperate coastal region of the northwestern North Pacific. Nitrogen fixation as high as 13.6 nmol N L−1 d−1 was measured from early summer to fall when the surface temperature exceeded 14.2 °C (but was lower than 24.3 °C) and the surface nitrate concentration was low (≤ 0.30 μM), although we also detected nitrogen fixation in subsurface layers (42–62 m) where nitrate concentrations were high (> 1 μM). Clone library analysis results indicated that nifH gene sequences were omnipresent throughout the investigation period. During the period when nitrogen fixation was detected (early summer to fall), the genes affiliated with UCYN-A, Trichodesmium, and γ-proteobacterial phylotype γ-24774A11 were frequently recovered. In contrast, when nitrogen fixation was undetectable (winter to spring), many sequences affiliated with Cluster III diazotrophs (putative anaerobic bacteria) were recovered. Quantitative PCR analysis revealed that UCYN-A was relatively abundant from early to late summer compared with Trichodesmium and γ-24774A11, whereas Trichodesmium abundance was the highest among the three groups during fall.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Beatriz Mouriño-Carballido ◽  
José Luis Otero Ferrer ◽  
Bieito Fernández Castro ◽  
Emilio Marañón ◽  
Mariña Blazquez Maseda ◽  
...  

AbstractDifficulties to quantify ocean turbulence have limited our knowledge about the magnitude and variability of nitrate turbulent diffusion, which constitutes one of the main processes responsible for the supply of nitrogen to phytoplankton inhabiting the euphotic zone. We use an extensive dataset of microturbulence observations collected in contrasting oceanic regions, to build a model for nitrate diffusion into the euphotic zone, and obtain the first global map for the distribution of this process. A model including two predictors (surface temperature and nitrate vertical gradient) explained 50% of the variance in the nitrate diffusive flux. This model was applied to climatological data to predict nitrate diffusion in oligotrophic mid and low latitude regions. Mean nitrate diffusion (~ 20 Tmol N y−1) was comparable to nitrate entrainment due to seasonal mixed-layer deepening between 40°N–40ºS, and to the sum of global estimates of nitrogen fixation, fluvial fluxes and atmospheric deposition. These results indicate that nitrate diffusion represents one of the major sources of new nitrogen into the surface ocean in these regions.


2021 ◽  
Author(s):  
Jenny Hieronymus ◽  
Kari Eilola ◽  
Malin Olofsson ◽  
Inga Hense ◽  
H. E. Markus Meier ◽  
...  

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