scholarly journals Enhanced viral production and virus-mediated mortality of bacterioplankton in a natural iron-fertilized bloom event above the Kerguelen Plateau

2014 ◽  
Vol 11 (7) ◽  
pp. 10827-10862 ◽  
Author(s):  
A. Malits ◽  
U. Christaki ◽  
I. Obernosterer ◽  
M. G. Weinbauer
Keyword(s):  
Food Web ◽  
Phytoplankton Bloom ◽  
Austral Summer ◽  
Viral Production ◽  
Kerguelen Plateau ◽  
Viral Lysis ◽  
Iron Fertilization ◽  
Protozoan Grazing ◽  
Natural Iron ◽  
Infected Cells

Abstract. Above the Kerguelen Plateau in the Southern Ocean natural iron fertilization sustains a large phytoplankton bloom over three months during austral summer. During the KEOPS1 project (KErguelen Ocean and Plateau compared Study1) we sampled this phytoplankton bloom during its declining phase along with the surrounding HNLC waters to study the effect of natural iron fertilization on the role of viruses in the microbial food web. Bacterial and viral abundances were 1.7 and 2.1 times, respectively, higher within the bloom than in HNLC waters. Viral production and virus-mediated mortality of bacterioplankton was 4.1 and 4.9 times, respectively, higher in the bloom, while the fraction of infected cells (FIC) and the fraction of lysogenic cells (FLC) showed no significant differences between environments. The present study suggests viruses to be more important for bacterial mortality within the bloom and dominate over protozoan grazing during the late bloom phase. As a consequence, at least at a late bloom stage, viral lysis shunts part of the photosynthetically fixed carbon in iron-fertilized regions into the dissolved organic matter (DOM) pool with potentially less particulate organic carbon transfered to larger members of the food web or exported.

scholarly journals Enhanced viral production and virus-mediated mortality of bacterioplankton in a natural iron-fertilized bloom event above the Kerguelen Plateau

2014 ◽  
Vol 11 (23) ◽  
pp. 6841-6853 ◽  
Author(s):  
A. Malits ◽  
U. Christaki ◽  
I. Obernosterer ◽  
M. G. Weinbauer
Keyword(s):  
Food Web ◽  
Phytoplankton Bloom ◽  
Austral Summer ◽  
Heterotrophic Nanoflagellates ◽  
Viral Production ◽  
Kerguelen Plateau ◽  
Viral Lysis ◽  
Iron Fertilization ◽  
Natural Iron ◽  
Infected Cells

Abstract. Above the Kerguelen Plateau in the Southern Ocean natural iron fertilization sustains a large phytoplankton bloom over 3 months during austral summer. During the KEOPS1 project (KErguelen Ocean and Plateau compared Study1) we sampled this phytoplankton bloom during its declining phase along with the surrounding high-nutrient–low-chlorophyll (HNLC) waters to study the effect of natural iron fertilization on the role of viruses in the microbial food web. Bacterial and viral abundances were 1.7 and 2.1 times, respectively, higher within the bloom than in HNLC waters. Viral production and virus-mediated mortality of bacterioplankton were 4.1 and 4.9 times, respectively, higher in the bloom, while the fraction of infected cells (FIC) and the fraction of lysogenic cells (FLC) showed no significant differences between environments. The present study suggests viruses to be more important for bacterial mortality within the bloom and dominate over grazing of heterotrophic nanoflagellates (HNFs) during the late bloom phase. As a consequence, at least at a late bloom stage, viral lysis shunts part of the photosynthetically fixed carbon in iron-fertilized regions into the dissolved organic matter (DOM) pool with potentially less particulate organic carbon transferred to larger members of the food web or exported.

scholarly journals Viral Lysis and Bacterivory during a Phytoplankton Bloom in a Coastal Water Microcosm

1999 ◽  
Vol 65 (5) ◽  
pp. 1949-1958 ◽  
Author(s):  
Núria Guixa-Boixereu ◽  
Kristine Lysnes ◽  
Carlos Pedrós-Alió
Keyword(s):  
Steady State ◽  
Bacterial Production ◽  
Phytoplankton Bloom ◽  
Decay Rates ◽  
Heterotrophic Nanoflagellates ◽  
Viral Production ◽  
Viral Lysis ◽  
Bacterial Growth Rate ◽  
Bacterial Assemblage ◽  
Bacterial Mortality

ABSTRACT The relative importance of viral lysis and bacterivory as causes of bacterial mortality were estimated. A laboratory experiment was carried out to check the kind of control that viruses could exert over the bacterial assemblage in a non-steady-state situation. Virus-like particles (VLP) were determined by using three methods of counting (DAPI [4′,6-diamidino-2-phenylindole] staining, YOPRO staining, and transmission electron microscopy). Virus counts increased from the beginning until the end of the experiment. However, different methods produced significantly different results. DAPI-stained VLP yielded the lowest numbers, while YOPRO-stained VLP yielded the highest numbers. Bacteria reached the maximal abundance at 122 h (3 × 107 bacteria ml−1), after the peak of chlorophyll a (80 μg liter−1). Phototrophic nanoflagellates followed the same pattern as for chlorophylla. Heterotrophic nanoflagellates showed oscillations in abundance throughout the experiment. The specific bacterial growth rate increased until 168 h (2.6 day−1). The bacterivory rate reached the maximal value at 96 hours (0.9 day−1). Bacterial mortality due to viral infection was measured by using two approaches: measuring the percentage of visibly infected bacteria (%VIB) and measuring the viral decay rates (VDR), which were estimated with cyanide. The %VIB was always lower than 1% during the experiment. VDR were used to estimate viral production. Viral production increased 1 order of magnitude during the experiment (from 106 to 107 VLP ml−1h−1). The percentage of heterotrophic bacterial production consumed by bacterivores was higher than 60% during the first 4 days of the experiment; afterwards, this percentage was lower than 10%. The percentage of heterotrophic bacterial production lysed by viruses as assessed by the VDR reached the highest values at the beginning (100%) and at the end (50%) of the experiment. Comparing both sources of mortality at each stage of the bloom, bacterivory was found to be higher than viral lysis at days 2 and 4, and viral lysis was higher than bacterivory at days 7 and 9. A balance between bacterial losses and bacterial production was calculated for each sampling interval. At intervals of 0 to 2 and 2 to 4 days, viral lysis and bacterivory accounted for all the bacterial losses. At intervals of 4 to 7 and 7 to 9 days, bacterial losses were not balanced by the sources of mortality measured. At these time points, bacterial abundance was about 20 times higher than the expected value if viral lysis and bacterivory had been the only factors causing bacterial mortality. In conclusion, mortality caused by viruses can be more important than bacterivory under non-steady-state conditions.

scholarly journals Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean

2008 ◽  
Vol 55 (5-7) ◽  
pp. 777-789 ◽  
Author(s):  
Ingrid Obernosterer ◽  
Urania Christaki ◽  
Dominique Lefèvre ◽  
Philippe Catala ◽  
France Van Wambeke ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Southern Ocean ◽  
Phytoplankton Bloom ◽  
Iron Fertilization ◽  
Natural Iron

scholarly journals Mutation of Putative N-Glycosylation Sites on Dengue Virus NS4B Decreases RNA Replication

2015 ◽  
Vol 89 (13) ◽  
pp. 6746-6760 ◽  
Author(s):  
Nenavath Gopal Naik ◽  
Huey-Nan Wu
Keyword(s):  
Life Cycle ◽  
Recombinant Protein ◽  
Dengue Virus ◽  
Protein Expression ◽  
Nonstructural Protein ◽  
Recombinant Protein Expression ◽  
Rna Replication ◽  
Viral Production ◽  
Glycosylation Sites ◽  
Infected Cells

ABSTRACTDengue virus (DENV) nonstructural protein 4B (NS4B) is an endoplasmic reticulum (ER) membrane-associated protein, and mutagenesis studies have revealed its significance in viral genome replication. In this work, we demonstrated that NS4B is an N-glycosylated protein in virus-infected cells as well as in recombinant protein expression. NS4B is N glycosylated at residues 58 and 62 and exists in two forms, glycosylated and unglycosylated. We manipulated full-length infectious RNA clones and subgenomic replicons to generate N58Q, N62Q, and N58QN62Q mutants. Each of the single mutants had distinct effects, but the N58QN62Q mutation resulted in dramatic reduction of viral production efficiency without affecting secretion or infectivity of the virion in mammalian and mosquito C6/36 hosts. Real-time quantitative PCR (qPCR), subgenomic replicon, andtrans-complementation assays indicated that the N58QN62Q mutation affected RNA replication possibly by the loss of glycans. In addition, four intragenic mutations (S59Y, S59F, T66A, and A137T) were obtained from mammalian and/or mosquito C6/36 cell culture systems. All of these second-site mutations compensated for the replication defect of the N58QN62Q mutant without creating novel glycosylation sites.In vivoprotein stability analyses revealed that the N58QN62Q mutation alone or plus a compensatory mutation did not affect the stability of NS4B. Overall, our findings indicated that mutation of putative N-glycosylation sites affected the biological function of NS4B in the viral replication complex.IMPORTANCEThis is the first report to identify and reveal the biological significance of dengue virus (DENV) nonstructural protein 4B (NS4B) posttranslation N-glycosylation to the virus life cycle. The study demonstrated that NS4B is N glycosylated in virus-infected cells and in recombinant protein expression. NS4B is modified by glycans at Asn-58 and Asn-62. Functional characterization implied that DENV NS4B utilizes the glycosylation machinery in both mammalian and mosquito hosts. Four intragenic mutations were found to compensate for replication and subsequent viral production deficiencies without creating novel N-glycosylation sites or modulating the stabilities of the protein, suggesting that glycans may be involved in maintaining the NS4B protein conformation. NS4B glycans may be necessary elements of the viral life cycle, but compensatory mutations can circumvent their requirement. This novel finding may have broader implications in flaviviral biology as the most likely glycan at Asn-62 of NS4B is conserved in DENV serotypes and in some related flaviviruses.

scholarly journals Imprint of a dissolved cobalt basaltic source on the Kerguelen Plateau

2012 ◽  
Vol 9 (12) ◽  
pp. 5279-5290 ◽  
Author(s):  
J. Bown ◽  
M. Boye ◽  
P. Laan ◽  
A. R. Bowie ◽  
Y.-H. Park ◽  
...  
Keyword(s):  
Surface Waters ◽  
External Input ◽  
Eastern Slope ◽  
Kerguelen Plateau ◽  
Dissolved Iron ◽  
Deep Waters ◽  
Iron Supply ◽  
Natural Iron ◽  
Shelf Sediments ◽  
Lateral Advection

Abstract. Processes of cobalt (Co) entrainment from shelf sediments over the Kerguelen Plateau were studied during the KEOPS (Kerguelen Ocean Plateau compared Study) in order to explain the exceptionally high dissolved cobalt concentrations that have been measured in the surface waters above the Kerguelen Plateau, and in intermediate and deep waters above its eastern slope. Lateral advection and dissolution of Co contained in basalt sediments around Heard Island, a main source of lithogenic Co in the study area, were shown to imprint the process of surface enrichment over the plateau. Dissolved Co enrichment was strongest at the intercept of the eastern slope with intermediate and deep waters, probably due to more efficient mobilisation of the sediments in the slope current, in addition to advection of Co-enriched and low-oxygenated ocean water masses. In surface waters, the strong sedimentary Co inputs were estimated to be much higher than biological Co uptake in phytoplankton blooms, underlining the potential use of dissolved cobalt as tracer of the natural iron fertilization above the Kerguelen Plateau. Based on a simple steady-state balance equation of the external input of dissolved iron over the plateau, the fertilization of iron inferred by using dissolved Co as a tracer of basalt sources is estimated to be 28 × 102 ± 21 × 102 t yr−1 in surface waters of the Kerguelen Plateau. This estimate is consistent with preceding ones (Zhang et al., 2008; Chever et al., 2010), and the calculated iron supply matches with the phytoplankton demand (Sarthou et al., 2008).

scholarly journals Probabilistic control of HIV latency and transactivation by the Tat gene circuit

2018 ◽  
Vol 115 (49) ◽  
pp. 12453-12458 ◽  
Author(s):  
Youfang Cao ◽  
Xue Lei ◽  
Ruy M. Ribeiro ◽  
Alan S. Perelson ◽  
Jie Liang
Keyword(s):  
Cell Phenotype ◽  
Control Mechanisms ◽  
Viral Production ◽  
Gene Circuit ◽  
Hiv Tat ◽  
Latently Infected ◽  
Shock And Kill ◽  
Infected Cells ◽  
Cell Phenotypes ◽  
Druggable Targets

The reservoir of HIV latently infected cells is the major obstacle for eradication of HIV infection. The “shock-and-kill” strategy proposed earlier aims to reduce the reservoir by activating cells out of latency. While the intracellular HIV Tat gene circuit is known to play important roles in controlling latency and its transactivation in HIV-infected cells, the detailed control mechanisms are not well understood. Here we study the mechanism of probabilistic control of the latent and the transactivated cell phenotypes of HIV-infected cells. We reconstructed the probability landscape, which is the probability distribution of the Tat gene circuit states, by directly computing the exact solution of the underlying chemical master equation. Results show that the Tat circuit exhibits a clear bimodal probability landscape (i.e., there are two distinct probability peaks, one associated with the latent cell phenotype and the other with the transactivated cell phenotype). We explore potential modifications to reactions in the Tat gene circuit for more effective transactivation of latent cells (i.e., the shock-and-kill strategy). Our results suggest that enhancing Tat acetylation can dramatically increase Tat and viral production, while increasing the Tat–transactivation response binding affinity can transactivate latent cells more rapidly than other manipulations. Our results further explored the “block and lock” strategy toward a functional cure for HIV. Overall, our study demonstrates a general approach toward discovery of effective therapeutic strategies and druggable targets by examining control mechanisms of cell phenotype switching via exactly computed probability landscapes of reaction networks.

scholarly journals Phytoplankton blooms on the western shelf of Tasmania: evidence of a highly productive ecosystem

Ocean Science ◽  
2015 ◽  
Vol 11 (1) ◽  
pp. 1-11 ◽  
Author(s):  
J. Kämpf
Keyword(s):  
Satellite Data ◽  
Coastal Upwelling ◽  
Phytoplankton Bloom ◽  
Hot Spot ◽  
Marine Ecosystem ◽  
Austral Summer ◽  
Phytoplankton Blooms ◽  
Study Region ◽  
Upwelling System ◽  
Fluorescence Line

Abstract. Satellite-derived chlorophyll a data using the standard NASA-OC3 (ocean colour) algorithm are strongly biased by coloured dissolved organic matter and suspended sediment of river discharges, which is a particular problem for the western Tasmanian shelf. This work reconstructs phytoplankton blooms in the study region using a quadratic regression between OC3 data and chlorophyll fluorescence based on the fluorescence line height (FLH) data. This regression is derived from satellite data of the nearby Bonney upwelling region, which is devoid of river influences. To this end, analyses of 10 years of MODIS-aqua satellite data reveal the existence of a highly productive ecosystem on the western Tasmanian shelf. The region normally experiences two phytoplankton blooms per annum. The first bloom occurs during late austral summer months as a consequence of upwelling-favourable coastal winds. Hence, the western Tasmanian shelf forms a previously unknown upwelling centre of the regional upwelling system, known as Great South Australian Coastal Upwelling System. The second phytoplankton bloom is a classical spring bloom also developing in the adjacent Tasman Sea. The author postulates that this region forms another important biological hot spot for the regional marine ecosystem.

Bryostatin-1 decreases HIV-1 infection and viral production in human primary macrophages

2021 ◽  
Author(s):  
Laurent Hany ◽  
Marc-Olivier Turmel ◽  
Corinne Barat ◽  
Michel Ouellet ◽  
Michel J. Tremblay
Keyword(s):  
T Cells ◽  
Myeloid Cells ◽  
People Living With Hiv ◽  
Bryostatin 1 ◽  
Viral Production ◽  
Human Macrophages ◽  
Reversal Agents ◽  
Infected Cells ◽  
Hiv 1 ◽  
Latency Reversal Agents

While combination antiretroviral therapy maintains undetectable viremia in People Living With HIV (PLWH), a life-long treatment is necessary to prevent viremic rebound after therapy cessation. This rebound seemed mainly caused by long lived HIV-1 latently infected cells reversing to a viral productive status. Reversing latency and elimination of these cells by the so-called shock and kill strategy is one of the main investigated leads to achieve an HIV-1 cure. Small molecules referred as latency reversal agents (LRAs) proved to efficiently reactivate latent CD4 + T cells. However, LRAs impact on de novo infection or HIV-1 production in productively infected macrophages remain elusive. Nontoxic doses of bryostatin-1, JQ1 and romidepsin were investigated in human monocyte-derived macrophages (MDMs). Treatment with bryostatin-1 or romidepsin resulted in a downregulation of CD4 and CCR5 receptors respectively, accompanied by a reduction of R5 tropic virus infection. HIV-1 replication was mainly regulated by receptor modulation for bryostatin-1, while romidepsin effect rely on upregulation of SAMHD1 activity. LRA stimulation of chronically infected cells did not enhance neither HIV-1 production nor gene expression. Surprisingly, bryostatin-1 caused a major decrease in viral production. This effect was not viral strain specific but appears to occur only in myeloid cells. Bryostatin-1 treatment of infected MDMs led to decreased amounts of capsid and matrix mature proteins with little to no modulation of precursors. Our observations revealed that bryostatin-1-treated myeloid and CD4 + T cells are responding differently upon HIV-1 infection. Therefore, additional studies are warranted to more fully assess the efficiency of HIV-1 eradicating strategies. Importance HIV-1 persists in a cellular latent form despite therapy that quickly propagates infection upon treatment interruption. Reversing latency would contribute to eradicate these cells, closing a gap to a cure. Macrophages are an acknowledged HIV-1 reservoir during therapy and are suspected to harbor latency establishment in vivo . Yet, the impact of latency reversal agents (LRAs) on HIV-1 infection and viral production in human macrophages is poorly known but nonetheless crucial to probe the safety of this strategy. In this in vitro study, we discovered encouraging anti-replicative features of distinct LRAs in human macrophages. We also described a new viral production inhibition mechanism by protein kinase C agonists which is specific to myeloid cells. This study provides new insights on HIV-1 propagation restriction potentials by LRAs in human macrophages and underline the importance of assessing latency reversal strategy on all HIV-1 targeted cells.

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