Network properties as functional traits for fungi

2021 ◽  
Author(s):  
Carlos Aguilar-Trigueros ◽  
Mark Fricker ◽  
Matthias Rillig
Keyword(s):  
Functional Traits ◽  
Interspecific Variation ◽  
Functional Trait ◽  
Ecological Strategies ◽  
Body Type ◽  
Network Growth ◽  
Transport Efficiency ◽  
Network Parameters ◽  
Phylogenetic Affiliation ◽  
Network Properties

<p>Fungal mycelia consist of an interconnected network of filamentous hyphae and represent the dominant phase of the lifecycle in all major fungal phyla, from basal to more recent clades. Indeed, the ecological success of fungi on land is partly due to such filamentous network growth. Nevertheless, fungal ecologists rarely use network features as functional traits. Given the widespread occurrence of this body type, we hypothesized that interspecific variation in network features may reflect both phylogenetic affiliation and distinct ecological strategies among species. We show first that there is high interspecific variation in network parameters of fungi, which partly correlates with taxonomy; and second that network parameters, related to predicted-mycelial transport mechanisms during the exploration phase, reveal the trait space in mycelium architecture across species.  This space predicts a continuum of ecological strategies along two extremes: from highly connected mycelia with high resilience to damage but limited transport efficiency, to poorly connected mycelia with low resilience but high transport efficiency. We argue that mycelial networks are potentially a rich source of information to inform functional trait analysis in fungi, but we also note the challenges in establishing common principles and processing pipelines that are required to facilitate widespread use of network properties as functional traits in fungal ecology.</p>

scholarly journals Is the use of unconstrained ordination appropriate for understanding plant ecological strategies and ecosystem functioning?

2017 ◽  
Author(s):  
Linhai Zhu ◽  
Jonathan S Lefcheck ◽  
Bojie Fu
Keyword(s):  
Functional Traits ◽  
Ecosystem Functioning ◽  
Functional Trait ◽  
Alternative Methods ◽  
Ecosystem Ecology ◽  
Ecological Strategies ◽  
Mechanistic Insight ◽  
Definition Of ◽  
Plant Ecological ◽  
Insight Into

The use of functional traits has increased exponentially in ecology, particularly in attempting to understand plant strategies and ecosystem functioning. This popularity has led to many proposed definitions of functional traits, which in turn has informed recommendations about how to gather, summarize, and analyze trait data. In this paper, we revisit the definition of the functional trait from the perspective of physiological, community and ecosystem ecology, and reason towards a broad, unrestrictive, and applicable definition. We then outline the conceptual mismatch between this definition and the popular practice of summarizing trait information using unconstrained ordination . We make specific suggestions about alternative methods to gain a mechanistic insight into how traits translate into functions. We hope this paper will improve our ability to move towards an ecological synthesis using a trait-based approach.

Interspecific variation in functional traits in relation to species climatic niche optima in Andean Polylepis (Rosaceae) tree species: evidence for climatic adaptations

2014 ◽  
Vol 41 (3) ◽  
pp. 301 ◽  
Author(s):  
Johanna M. Toivonen ◽  
Viviana Horna ◽  
Michael Kessler ◽  
Kalle Ruokolainen ◽  
Dietrich Hertel
Keyword(s):  
Functional Traits ◽  
Tree Species ◽  
Phylogenetic Signal ◽  
Leaf Size ◽  
Interspecific Variation ◽  
Functional Trait ◽  
Root Tip ◽  
Mean Annual Temperature ◽  
Climatic Niche ◽  
Genetically Determined

Plant functional traits can be genetically determined or phenotypically plastic. We assessed the degree of genetic determinism in the functional traits of Andean Polylepis tree species among 14 important traits that enable the species to withstand cold and dry conditions. We conducted a common garden experiment and related the species-specific means of the functional traits to the variables of climatic niche optima of the species (mean annual temperature and annual precipitation), deducing that if the interspecific variation in the functional trait is related to the species climatic niche optima according to the theoretically-expected pattern of climate-trait relationship, the variation of the trait must be genetically determined. In general, the traits were related either to species temperature or precipitation optima. For example, leaf size, maximum photosynthesis rate and root tip abundance were related to temperature, whereas light compensation and light saturation points were related to precipitation. Only leaf size showed a significant phylogenetic signal, indicating that most of the manifested climate–trait relationships are not caused purely by phylogeny, but are mainly a result of species specialisation along an environmental gradient. However, in many cases the relationships were rather weak. This suggests that important functional traits of Polylepis species involve both genetic and phenotypic components aiming to maximise the overall fitness of the species at high elevations.

scholarly journals Is the use of unconstrained ordination appropriate for understanding plant ecological strategies and ecosystem functioning?

2017 ◽  
Author(s):  
Linhai Zhu ◽  
Jonathan S Lefcheck ◽  
Bojie Fu
Keyword(s):  
Functional Traits ◽  
Ecosystem Functioning ◽  
Functional Trait ◽  
Alternative Methods ◽  
Ecosystem Ecology ◽  
Ecological Strategies ◽  
Mechanistic Insight ◽  
Definition Of ◽  
Plant Ecological ◽  
Insight Into

The use of functional traits has increased exponentially in ecology, particularly in attempting to understand plant strategies and ecosystem functioning. This popularity has led to many proposed definitions of functional traits, which in turn has informed recommendations about how to gather, summarize, and analyze trait data. In this paper, we revisit the definition of the functional trait from the perspective of physiological, community and ecosystem ecology, and reason towards a broad, unrestrictive, and applicable definition. We then outline the conceptual mismatch between this definition and the popular practice of summarizing trait information using unconstrained ordination . We make specific suggestions about alternative methods to gain a mechanistic insight into how traits translate into functions. We hope this paper will improve our ability to move towards an ecological synthesis using a trait-based approach.

scholarly journals Variation Patterns of Functional Trait Moments Along Geographical Gradients and Their Environmental Determinants in the Subtropical Evergreen Broadleaved Forests

2021 ◽  
Vol 12 ◽  
Author(s):  
Caishuang Huang ◽  
Yue Xu ◽  
Runguo Zang
Keyword(s):  
Climate Variability ◽  
Leaf Area ◽  
Functional Traits ◽  
Specific Leaf Area ◽  
Functional Trait ◽  
Leaf Nitrogen ◽  
Subtropical Region ◽  
Mean Variance ◽  
Nitrogen Phosphorus ◽  
Skewness And Kurtosis

Understanding how environmental change alters the composition of plant assemblages is a major challenge in the face of global climate change. Researches accounting for site-specific trait values within forest communities help bridge plant economics theory and functional biogeography to better evaluate and predict relationships between environment and ecosystem functioning. Here, by measuring six functional traits (specific leaf area, leaf dry matter content, leaf nitrogen, and phosphorus concentration, leaf nitrogen/phosphorus, wood density) for 292 woody plant species (48,680 individuals) from 250 established permanent forest dynamics plots in five locations across the subtropical evergreen broadleaved forests (SEBLF) in China, we quantified functional compositions of communities by calculating four trait moments, i.e., community-weighted mean, variance, skewness, and kurtosis. The geographical (latitudinal, longitudinal, and elevational) patterns of functional trait moments and their environmental drivers were examined. Results showed that functional trait moments shifted significantly along the geographical gradients, and trait moments varied in different ways across different gradients. Plants generally showed coordinated trait shifts toward more conservative growth strategies (lower specific leaf area, leaf N and P concentration while higher leaf nitrogen/phosphorus and wood density) along increasing latitude and longitude. However, trends opposite to the latitudinal and longitudinal patterns appeared in trait mean values along elevation. The three sets of environmental variables (climate, soil and topography) explained 35.0–69.0%, 21.0–56.0%, 14.0–31.0%, and 16.0–30.0% of the variations in mean, variance, skewness, and kurtosis across the six functional traits, respectively. Patterns of shifts in functional trait moments along geographical gradients in the subtropical region were mainly determined by the joint effects of climatic and edaphic conditions. Climate regimes, especially climate variability, were the strongest driving force, followed by soil nutrients, while topography played the least role. Moreover, the relationship of variance, skewness and kurtosis with climate and their geographical patterns suggested that rare phenotypes at edges of trait space were selected in harsher environments. Our study suggested that environmental filtering (especially climate variability) was the dominant process of functional assembly for forest communities in the subtropical region along geographical gradients.

Beyond mean functional traits: Influence of functional trait profiles on forest structure, production, and mortality across the eastern US

2014 ◽  
Vol 328 ◽  
pp. 1-9 ◽  
Author(s):  
Matthew B. Russell ◽  
Christopher W. Woodall ◽  
Anthony W. D’Amato ◽  
Grant M. Domke ◽  
Sassan S. Saatchi
Keyword(s):  
Functional Traits ◽  
Forest Structure ◽  
Functional Trait

scholarly journals Seed Functional Traits Provide Support for Ecological Restoration and ex situ Conservation in the Threatened Amazon Ironstone Outcrop Flora

2020 ◽  
Vol 11 ◽  
Author(s):  
Marcilio Zanetti ◽  
Roberta L. C. Dayrell ◽  
Mariana V. Wardil ◽  
Alexandre Damasceno ◽  
Tais Fernandes ◽  
...  
Keyword(s):  
High Temperatures ◽  
Functional Traits ◽  
Niche Breadth ◽  
Seed Storage ◽  
Interspecific Variation ◽  
Ex Situ ◽  
Seed Traits ◽  
Physical Dormancy ◽  
Apparent Lack ◽  
Germination Traits

Cangas (ironstone outcrops) host a specialized flora, characterized by high degree of edaphic endemism and an apparent lack of natural history knowledge of its flora. Due to intense pressure from iron ore mining this ecosystem is under threat and in need of restoration. We studied seed functional traits that are relevant for restoration, translocation and ex situ conservation in 48 species from cangas in eastern Amazon. Were determined the thermal niche breadth, classified seed dormancy and determined methods to overcome it, determined the effect of seed storage on germination, tested the association between germination traits and functional groups, and tested whether seed traits are phylogenetically conserved. We found a broad interspecific variation in most seed traits, except for seed water content. Large interspecific variation in the temperature niche breadth was found among the studied species, but only four species, showed optimum germination at high temperatures of 35–40°C, despite high temperatures under natural conditions. Only 35% of the studied species produced dormant seeds. Mechanical scarification was effective in overcoming physical dormancy and application of gibberellic acid was effective in overcoming physiological dormancy in five species. For the 29 species that seeds were stored for 24 months, 76% showed decreases in the germination percentage. The weak association between germination traits and life-history traits indicate that no particular plant functional type requires specific methods for seed-based translocations. Exceptions were the lianas which showed relatively larger seeds compared to the other growth-forms. Dormancy was the only trait strongly related to phylogeny, suggesting that phylogenetic relatedness may not be a good predictor of regeneration from seeds in cangas. Our study provides support to better manage seed sourcing, use, storage and enhancement techniques with expected reduced costs and increased seedling establishment success.

Mechanisms regulating spatial changes in grassland productivity following nutrient addition in northern China

2019 ◽  
Vol 41 (1) ◽  
pp. 83
Author(s):  
Na Zhao ◽  
Xinqing Shao ◽  
Chao Chen ◽  
Jiangwen Fan ◽  
Kun Wang
Keyword(s):  
Functional Traits ◽  
Plant Biomass ◽  
Northern China ◽  
Functional Trait ◽  
Community Response ◽  
Nutrient Addition ◽  
Leymus Chinensis ◽  
Ecosystem Functions ◽  
Natural Grasslands ◽  
Key Species

Plant biomass is the most fundamental component of ecosystems. The spatial stability of plant biomass is important, and the mechanisms regulating plant biomass spatial variability in variable environments are a central focus of ecology. However, they have rarely been explored. We conducted an experiment to test how diversity and functional traits affected variation in biomass and community response to nutrient availability in three plant communities: natural; forb, legume, and bunchgrass; and rhizomatous grass. We found that biomass stability rarely changed with increasing taxonomic species richness and functional group richness but declined with increasing Shannon–Weiner indices (the combination of richness and evenness) and functional trait diversity. However, differences in plant species composition generated different responses in both the amount and spatial variation of biomass following nutrient addition. Because rhizomatous grasses are weakly competitive in nutrient-poor conditions, interaction between resource-acquisitive (grass) and stress-tolerant (forb) species in the natural community conferred the greatest overall stability. The rapid nutrient acquisition ability of the rhizomatous grass Leymus chinensis was stimulated in nutrient-abundant conditions. The functional traits of this dominant species overrode the diversity interaction effects of the natural and forb, legume, and bunchgrass communities. This ultimately resulted in the rhizomatous grass community being the most stable. Community stability was strongly determined by a few key species, particularly rhizomatous grasses, rather than by the average response of all species, thereby supporting the mass ratio hypothesis. Our results indicated that rhizomatous grasses could provide vegetative productivity to reduce soil loss and prevent degradation of L. chinensis-dominant grassland. Thus, protecting specific species is critical for maintaining rangeland ecosystem functions. Moreover, the conservation importance of grasses, non-leguminous forbs, legumes, or even rare species could not be ignored. Maintaining stability mechanisms in natural grasslands is complex, and therefore, further studies need to focus on finding a unified mechanism that can regulate appreciable biomass variation under shifting environmental conditions.

scholarly journals Analysis of the Similarity between in Silico Ideotypes and Phenotypic Profiles to Support Cultivar Recommendation—A Case Study on Phaseolus vulgaris L.

Agronomy ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1733
Author(s):  
Livia Paleari ◽  
Fosco M. Vesely ◽  
Riccardo A. Ravasi ◽  
Ermes Movedi ◽  
Sofia Tartarini ◽  
...  
Keyword(s):  
Functional Traits ◽  
In Silico ◽  
Cropping System ◽  
Time Factors ◽  
Functional Trait ◽  
Light Extinction ◽  
Sowing Time ◽  
Light Extinction Coefficient ◽  
Context Specific

Cultivar recommendation is a key factor in cropping system management. Classical approaches based on comparative multi-environmental trials can hardly explore the agro-climatic and management heterogeneity farmers may have to face. Moreover, they struggle to keep up with the number of genotypes commercially released each year. We propose a new approach based on the integration of in silico ideotyping and functional trait profiling, with the common bean (Phaseoulus vulgaris L.) in Northern Italy as a case study. Statistical distributions for six functional traits (light extinction coefficient, radiation use efficiency, thermal time to first pod and maturity, seed weight, plant height) were derived for 24 bean varieties. The analysis of soil, climate and management in the study area led us to define 21 homogeneous contexts, for which ideotypes were identified using the crop model STICS (Simulateur mulTIdisciplinaire pour les Cultures Standard), the E-FAST (Extended Fourier Amplitude Sensitivity Test) sensitivity analysis method, and the distributions of functional traits. For each context, the 24 cultivars were ranked according to the similarity (weighted Euclidean distance) with the ideotype. Context-specific ideotypes mainly differed for phenological adaptation to specific combinations of climate and management (sowing time) factors, and this reflected in the cultivar recommendation for the different contexts. Feedbacks from bean technicians in the study area confirmed the reliability of the results and, in turn, of the proposed methodology.

Vertical dynamics in community functioning of biofilm-dwelling ciliates during the colonisation process in coastal waters of the Yellow Sea

2019 ◽  
Vol 70 (11) ◽  
pp. 1611 ◽  
Author(s):  
Xiaoyun Bai ◽  
Congcong Guo ◽  
Mamun Abdullah Al ◽  
Alan Warren ◽  
Henglong Xu
Keyword(s):  
Functional Diversity ◽  
Functional Traits ◽  
Coastal Waters ◽  
Yellow Sea ◽  
Northern China ◽  
Diversity Indices ◽  
Functional Trait ◽  
The Yellow Sea ◽  
Biological Traits ◽  
Trait Distribution

Multifunctional trait analysis is increasingly recognised as an effective tool for assessing ecosystem function and environmental quality. Here, a baseline study was performed at four depths (i.e. 1, 2, 3.5 and 5m) in Yellow Sea coastal waters of northern China in order to determine the optimal depth for bioassessment using biological traits of biofilm-dwelling ciliates. Community-weighted means (CWM) from functional traits system were used to summarise the trait distribution and functional diversity of ciliates among the four depths during a 1-month colonisation period. Functional trait distribution revealed a clear temporal variation among the four depths. In total, 3 of 17 functional traits (i.e. feeding type, body size and flexibility) showed significant temporal patterns. Bootstrapped averaging and permutational multivariate analysis of variance (PERMANOVA) tests demonstrated that the colonisation pattern of biofilm-dwelling ciliates as expressed by CWM at 1 and 2m differed significantly from those at 3.5 and 5m. Functional diversity indices showed lower variability at 1 and 2m than at 3.5 and 5m. These results suggest that 1 and 2m are the preferred sampling depths for bioassessment of marine water quality using biological traits of biofilm-dwelling ciliates.

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