scholarly journals Frequency of Class 1 Integron in Escherichia Coli Strains Isolated from Patients with Urinary Tract Infections in North of Iran

2015 ◽  
Vol 27 (1) ◽  
pp. 10 ◽  
Author(s):  
Fatemeh Ahangarkani ◽  
Ramazan Rajabnia ◽  
Elaheh Shahandashti ◽  
Meghdad Bagheri ◽  
Maryam Ramez
2016 ◽  
Vol 18 (1) ◽  
Author(s):  
Seyed Sajjad Khoramrooz ◽  
Asghar Sharifi ◽  
Mahboubeh Yazdanpanah ◽  
Seyed Ali Asghar Malek Hosseini ◽  
Mohammad Emaneini ◽  
...  

2020 ◽  
Vol 11 (2) ◽  
pp. 2558-2567
Author(s):  
Nabil Salim Saaid Tuwaij

Escherichia coli has a major cause of women urinary tract infection, which it harbours various kinds of drug resistance-associated genes. So, the current study examined the prevalence and frequency of genes. These genes are responsible for the resistance of aminoglycoside and fluoroquinolone drugs in uropathogenic gentamicin-resistant E. coli isolated from urinary tract infections among women. Six hundred urine specimens were tested. The data revealed 348 (58%) and 70 (11.66%) had gram-positive and gram-negative, respectively. The other 182 (30.33%) were found without any growth. A total of 600 clinical specimens were 167(27.833%) identified as E.coli isolate according to biochemical tests and Vitek-2 System. The phenotypic gentamicin-resistant screening (MIC and disk diffusion) revealed out of 167(27.833%) E.coli isolates were 25(4.166%) gentamicin-resistance. Antibacterial agents susceptibility of 25 gentamicin-resistant E.coli isolates showed concern level of resistance among different categories of antibacterial agents, ranged from high resistance 25(100%) for nalidixic acid to less rate of resistance 4/25(16%) by imipenem drug. Molecular data have demonstrated the prevalence of associated resistance genes for both aminoglycosides and fluoroquinolones. Among 25 gentamicin-resistant E.coli isolates 24/25(96%) were harbours for the genes gyr-B, aac(6’)-Ib-cr, strA/B, and 23/25(92%) of isolates were harbouring for the genes gyrA, qnrS, and aacC-2. In contrast, qnr-B, aac(6′)/aph(2′), and aph(3)lla were identified in 20/25(80%), 11/25(44%) and 8/25(32%) respectively. At the same respect, aacC-1, qnrA, and qnrC genes were no detect in the current study. However, 24/25(96%) of isolates were carrying the class 1integron (intel-1) gene.


2019 ◽  
Vol 19 (3) ◽  
pp. 322-326 ◽  
Author(s):  
Hassan Valadbeigi ◽  
Elham Esmaeeli ◽  
Sobhan Ghafourian ◽  
Abbas Maleki ◽  
Nourkhoda Sadeghifard

Introduction: The aim of the current study was to investigate the prevalence of virulence genes in uropathogenic Escherichia coli (UPEC) isolates in Ilam. Materials and Methods: For this purpose, a total of 80 UPEC isolates were collected for patients with UTIs during a 6 months period. The multiplex polymerase chain reaction (multiplex PCR) was used to detect the papEF, fimH, iucD, hlyA, fyuA, and ompT genes. Results: The prevalence of fimH, papEF, iucD, fyuA, hlyA, hlyA, and ompT genes were 87.5%, 47.5%, 60%, 67.5%, 27.5%, 47.5% and 71.2%, respectively. Among all of the isolates, 27 profiles were obtained. Conclusion: Our findings demonstrated that the most prevalence was found for fimH, and different distribution of virulence genes suggested different ability of pathogenicity.


2001 ◽  
Vol 45 (12) ◽  
pp. 3524-3530 ◽  
Author(s):  
Christoph K. Naber ◽  
Michaela Hammer ◽  
Martina Kinzig-Schippers ◽  
Christian Sauber ◽  
Fritz Sörgel ◽  
...  

ABSTRACT In a randomized crossover study, 16 volunteers (8 men, 8 women) received single oral doses of 320 mg of gemifloxacin and 400 mg of ofloxacin on two separate occasions in the fasting state to assess the urinary excretion and urinary bactericidal titers (UBTs) at intervals for up to 144 h. Ofloxacin showed higher concentrations in urine compared with those of gemifloxacin. The median (range) cumulative excretion of gemifloxacin was 29.7% (8.4 to 48.7%) of the parent drug administered, and median (range) cumulative excretion of ofloxacin was 84.3% (46.5 to 95.2%) of the parent drug administered. The UBTs, i.e., the highest twofold dilutions (with antibiotic-free urine as the diluent) of urine that were still bactericidal, were determined for a reference strain and nine uropathogens for which the MICs of gemifloxacin and ofloxacin were as follows:Escherichia coli ATCC 25922, 0.016 and 0.06 μg/ml, respectively; Klebsiella pneumoniae, 0.03 and 0.06 μg/ml, respectively; Proteus mirabilis, 0.125 and 0.125 μg/ml, respectively; Escherichia coli, 0.06 and 0.5 μg/ml, respectively; Pseudomonas aeruginosa, 1 and 4 μg/ml, respectively; Staphylococcus aureus, 0.008 and 0.25 μg/ml, respectively; Enterococcus faecalis, 0.06 and 2 μg/ml, respectively;Staphylococcus aureus, 0.25 and 4 μg/ml, respectively;Enterococcus faecalis, 0.5 and 32 μg/ml, respectively; and Staphylococcus aureus, 2 and 32 μg/ml, respectively. Generally, the UBTs for gram-positive uropathogens were higher for gemifloxacin than for ofloxacin and the UBTs for gram-negative uropathogens were higher for ofloxacin than for gemifloxacin. According to the UBTs, ofloxacin-resistant uropathogens (MICs, ≥4 mg/liter) should also be considered gemifloxacin resistant. Although clinical trials have shown that gemifloxacin is effective for the treatment of uncomplicated urinary tract infections, whether an oral dosage of 320 mg of gemifloxacin once daily is also adequate for the treatment of complicated urinary tract infections has yet to be confirmed.


2021 ◽  
Vol 9 (7) ◽  
pp. 1416
Author(s):  
Karen Leth Nielsen ◽  
Marc Stegger ◽  
Kristoffer Kiil ◽  
Berit Lilje ◽  
Karen Ejrnæs ◽  
...  

Recurrent urinary tract infection (rUTI) remains a major problem for many women and therefore the pursuit for genomic and phenotypic traits which could define rUTI has been ongoing. The present study applied a genomic approach to investigate recurrent urinary tract infections by comparative analyses of recurrent and non-recurrent Escherichia coli isolates from general practice. From whole-genome sequencing data, phylogenetic clustering and genomic traits were studied on a collection of isolates which caused recurrent infection compared to non-recurrent isolates. In addition, genomic variation between the 1st and following infection was studied on a subset of the isolates. Evidence of limited adaptation between the recurrent infections based on single nucleotide polymorphism analyses with a range of 0–13 non-synonymous single nucleotide polymorphisms (SNPs) between the paired isolates. This included an overrepresentation of SNPs in metabolism genes. We identified several genes which were more common in rUTI isolates, including nine fimbrial genes, however, not significantly after false-discovery rate. Finally, the results show that recurrent isolates of the present dataset are not distinctive by variation in the core genome, and thus, did not cluster distinct from non-rUTI isolates in a SNP phylogeny.


Viruses ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 1348
Author(s):  
Lívia Slobodníková ◽  
Barbora Markusková ◽  
Michal Kajsík ◽  
Michal Andrezál ◽  
Marek Straka ◽  
...  

Urinary tract infections (UTIs) are among the events that most frequently need medical intervention. Uropathogenic Escherichia coli are frequently their causative agents and the infections are sometimes complicated by the presence of polyresistant nosocomial strains. Phage therapy is a tool that has good prospects for the treatment of these infections. In the present study, we isolated and characterized two bacteriophages with broad host specificity against a panel of local uropathogenic E. coli strains and combined them into a phage cocktail. According to genome sequencing, these phages were closely related and belonged to the Tequatrovirus genus. The newly isolated phages showed very good activity on a panel of local clinical E. coli strains from urinary tract infections. In the form of a two-phage cocktail, they were active on E. coli strains belonging to phylogroups B2 and D, with relatively lower activity in B1 and no response in phylogroup A. Our study is a preliminary step toward the establishment of a national phage bank containing local, well-characterized phages with therapeutic potential for patients in Slovakia.


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